From: Leo Famulari <leo@famulari.name>
To: Marius Bakke <mbakke@fastmail.com>
Cc: guix-devel@gnu.org
Subject: Re: [PATCH] gnu: Add mash.
Date: Wed, 31 Aug 2016 15:44:26 -0400 [thread overview]
Message-ID: <20160831194426.GC22495@jasmine> (raw)
In-Reply-To: <87h9a2yweu.fsf@ike.i-did-not-set--mail-host-address--so-tickle-me>
On Tue, Aug 30, 2016 at 06:54:49PM +0100, Marius Bakke wrote:
> * gnu/packages/bioinformatics.scm (mash): New variable.
Thanks!
> + (add-after 'unpack 'fix-includes
> + (lambda _
> + (substitute* '("src/mash/Sketch.cpp" "src/mash/CommandFind.cpp")
> + (("^#include \"kseq\\.h\"")
> + "#include \"htslib/kseq.h\""))
> + #t))
> + (add-before 'configure 'autoconf
> + (lambda _ (zero? (system* "autoconf")))))))
> + (native-inputs
> + `(("autoconf" ,autoconf)
> + ("capnproto" ,capnproto)
> + ("htslib" ,htslib)))
Does it only need to use capnproto and htslib while building? Okay if
so.
next prev parent reply other threads:[~2016-08-31 19:44 UTC|newest]
Thread overview: 8+ messages / expand[flat|nested] mbox.gz Atom feed top
2016-08-30 17:54 [PATCH] gnu: Add mash Marius Bakke
2016-08-31 19:44 ` Leo Famulari [this message]
2016-08-31 20:16 ` Ricardo Wurmus
2016-09-01 10:00 ` Marius Bakke
2016-09-06 21:01 ` Leo Famulari
2016-09-08 22:06 ` Marius Bakke
2016-09-10 21:20 ` Leo Famulari
2016-09-10 21:42 ` Leo Famulari
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