From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
To: guix-devel@gnu.org
Subject: [PATCH] gnu: Add discrover.
Date: Tue, 2 Aug 2016 16:21:27 +0200 [thread overview]
Message-ID: <20160802142127.12685-1-ricardo.wurmus@mdc-berlin.de> (raw)
* gnu/packages/bioinformatics.scm (discrover): New variable.
---
gnu/packages/bioinformatics.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5cd92b8..06b8290 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -51,7 +51,9 @@
#:use-module (gnu packages gawk)
#:use-module (gnu packages gcc)
#:use-module (gnu packages gd)
+ #:use-module (gnu packages gtk)
#:use-module (gnu packages image)
+ #:use-module (gnu packages imagemagick)
#:use-module (gnu packages java)
#:use-module (gnu packages linux)
#:use-module (gnu packages logging)
@@ -70,6 +72,7 @@
#:use-module (gnu packages ruby)
#:use-module (gnu packages statistics)
#:use-module (gnu packages tbb)
+ #:use-module (gnu packages tex)
#:use-module (gnu packages textutils)
#:use-module (gnu packages time)
#:use-module (gnu packages tls)
@@ -1603,6 +1606,33 @@ data and settings.")
(license (license:non-copyleft "file://src/COPYING"
"See src/COPYING in the distribution."))))
+(define-public discrover
+ (package
+ (name "discrover")
+ (version "1.6.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/maaskola/discrover/archive/"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0rah9ja4m0rl5mldd6vag9rwrivw1zrqxssfq8qx64m7961fp68k"))))
+ (build-system cmake-build-system)
+ (arguments `(#:tests? #f)) ; there are no tests
+ (inputs
+ `(("boost" ,boost)
+ ("cairo" ,cairo)))
+ (native-inputs
+ `(("texlive" ,texlive)
+ ("imagemagick" ,imagemagick)))
+ (home-page "http://dorina.mdc-berlin.de/public/rajewsky/discrover/")
+ (synopsis "Discover discriminative nucleotide sequence motifs")
+ (description "Discrover is a motif discovery method to find binding sites
+of nucleic acid binding proteins.")
+ (license license:gpl3+)))
+
(define-public eigensoft
(let ((revision "1")
(commit "b14d1e202e21e532536ff8004f0419cd5e259dc7"))
--
2.9.0
next reply other threads:[~2016-08-02 14:21 UTC|newest]
Thread overview: 3+ messages / expand[flat|nested] mbox.gz Atom feed top
2016-08-02 14:21 Ricardo Wurmus [this message]
2016-08-02 20:37 ` [PATCH] gnu: Add discrover Leo Famulari
2016-08-03 15:21 ` Ricardo Wurmus
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