From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ben Woodcroft Subject: PATCH [0/22]: Add roary. Date: Wed, 27 Jul 2016 22:54:01 +1000 Message-ID: <20160727125423.7768-1-donttrustben@gmail.com> Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:54093) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bSOMK-00081W-69 for guix-devel@gnu.org; Wed, 27 Jul 2016 08:54:52 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1bSOMG-0004Ep-1K for guix-devel@gnu.org; Wed, 27 Jul 2016 08:54:47 -0400 Received: from mail-pf0-x244.google.com ([2607:f8b0:400e:c00::244]:36563) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bSOMF-0004Ec-QZ for guix-devel@gnu.org; Wed, 27 Jul 2016 08:54:43 -0400 Received: by mail-pf0-x244.google.com with SMTP id y134so1834777pfg.3 for ; Wed, 27 Jul 2016 05:54:43 -0700 (PDT) Received: from localhost.localdomain ([103.25.181.216]) by smtp.googlemail.com with ESMTPSA id o80sm9177941pfa.67.2016.07.27.05.54.39 for (version=TLS1_2 cipher=ECDHE-RSA-AES128-SHA bits=128/128); Wed, 27 Jul 2016 05:54:41 -0700 (PDT) List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: guix-devel@gnu.org Hi all, This patchset adds roary, a pipeline which at times is used for tracking outbreaks of pathogenic bacteria in e.g. foodstuffs or hospitals, by comparing whole genome sequences. perl-log-log4perl was already discussed previously and I am happy to defer to that patch. I only include mine here so the packages build. https://lists.gnu.org/archive/html/guix-devel/2016-07/msg00624.html Thanks for any review in advance. ben