* [PATCH 1/4] gnu: Add r-ade4.
@ 2016-07-06 15:31 Ricardo Wurmus
2016-07-06 15:31 ` [PATCH 2/4] gnu: Add r-seqinr Ricardo Wurmus
` (2 more replies)
0 siblings, 3 replies; 4+ messages in thread
From: Ricardo Wurmus @ 2016-07-06 15:31 UTC (permalink / raw)
To: guix-devel
* gnu/packages/statistics.scm (r-ade4): New variable.
---
gnu/packages/statistics.scm | 19 +++++++++++++++++++
1 file changed, 19 insertions(+)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 94ebe4d..813000e 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1405,6 +1405,25 @@ diagnostic tests of convergence to the equilibrium distribution of the Markov
chain.")
(license license:gpl2+)))
+(define-public r-ade4
+ (package
+ (name "r-ade4")
+ (version "1.7-4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "ade4" version))
+ (sha256
+ (base32
+ "17sbicash7z4b63dlrbaf8xx2pbwh62vykzvhdjs43h8jkl881y7"))))
+ (build-system r-build-system)
+ (home-page "http://pbil.univ-lyon1.fr/ADE-4")
+ (synopsis "Multivariate data analysis and graphical display")
+ (description
+ "The ade4 package contains data analysis functions to analyze ecological
+and environmental data in the framework of Euclidean exploratory methods.")
+ (license license:gpl2+)))
+
(define-public r-xml2
(package
(name "r-xml2")
--
2.8.4
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [PATCH 2/4] gnu: Add r-seqinr.
2016-07-06 15:31 [PATCH 1/4] gnu: Add r-ade4 Ricardo Wurmus
@ 2016-07-06 15:31 ` Ricardo Wurmus
2016-07-06 15:31 ` [PATCH 3/4] gnu: Add r-multitaper Ricardo Wurmus
2016-07-06 15:31 ` [PATCH 4/4] gnu: Add r-domc Ricardo Wurmus
2 siblings, 0 replies; 4+ messages in thread
From: Ricardo Wurmus @ 2016-07-06 15:31 UTC (permalink / raw)
To: guix-devel
* gnu/packages/bioinformatics.scm (r-seqinr): New variable.
---
gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4cd90b9..294f4ee 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4386,6 +4386,30 @@ In addition, a few low-level concrete subclasses of general interest (e.g.
S4Vectors package itself.")
(license license:artistic2.0)))
+(define-public r-seqinr
+ (package
+ (name "r-seqinr")
+ (version "3.1-3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "seqinr" version))
+ (sha256
+ (base32
+ "0bbjfwbqg74wsamb3iz01g0ssdpdpg65gh00y9xlnpk4wb990n4n"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-ade4" ,r-ade4)))
+ (inputs
+ `(("zlib" ,zlib)))
+ (home-page "http://seqinr.r-forge.r-project.org/")
+ (synopsis "Biological sequences retrieval and analysis")
+ (description
+ "This package provides tools for exploratory data analysis and data
+visualization of biological sequence (DNA and protein) data. It also includes
+utilities for sequence data management under the ACNUC system.")
+ (license license:gpl2+)))
+
(define-public r-iranges
(package
(name "r-iranges")
--
2.8.4
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [PATCH 3/4] gnu: Add r-multitaper.
2016-07-06 15:31 [PATCH 1/4] gnu: Add r-ade4 Ricardo Wurmus
2016-07-06 15:31 ` [PATCH 2/4] gnu: Add r-seqinr Ricardo Wurmus
@ 2016-07-06 15:31 ` Ricardo Wurmus
2016-07-06 15:31 ` [PATCH 4/4] gnu: Add r-domc Ricardo Wurmus
2 siblings, 0 replies; 4+ messages in thread
From: Ricardo Wurmus @ 2016-07-06 15:31 UTC (permalink / raw)
To: guix-devel
* gnu/packages/statistics.scm (r-multitaper): New variable.
---
gnu/packages/statistics.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 813000e..6d5ee67 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1448,6 +1448,32 @@ and environmental data in the framework of Euclidean exploratory methods.")
files in R. It is built on top of the libxml2 C library.")
(license license:gpl2+)))
+(define-public r-multitaper
+ (package
+ (name "r-multitaper")
+ (version "1.0-11")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "multitaper" version))
+ (sha256
+ (base32
+ "1s0lmjzpyd7zmc2p1ywv5fm7qkq357p70b76gw9wjlms6d81j1n4"))))
+ (build-system r-build-system)
+ (native-inputs
+ `(("gfortran" ,gfortran)))
+ (home-page "http://github.com/wesleyburr/multitaper/")
+ (synopsis "Multitaper spectral analysis tools")
+ (description
+ "This package implements multitaper spectral estimation
+techniques using prolate spheroidal sequences (Slepians) and sine
+tapers for time series analysis. It includes an adaptive weighted
+multitaper spectral estimate, a coherence estimate, Thomson's Harmonic
+F-test, and complex demodulation. The Slepians sequences are
+generated efficiently using a tridiagonal matrix solution, and
+jackknifed confidence intervals are available for most estimates.")
+ (license license:gpl2+)))
+
(define-public r-rversions
(package
(name "r-rversions")
--
2.8.4
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [PATCH 4/4] gnu: Add r-domc.
2016-07-06 15:31 [PATCH 1/4] gnu: Add r-ade4 Ricardo Wurmus
2016-07-06 15:31 ` [PATCH 2/4] gnu: Add r-seqinr Ricardo Wurmus
2016-07-06 15:31 ` [PATCH 3/4] gnu: Add r-multitaper Ricardo Wurmus
@ 2016-07-06 15:31 ` Ricardo Wurmus
2 siblings, 0 replies; 4+ messages in thread
From: Ricardo Wurmus @ 2016-07-06 15:31 UTC (permalink / raw)
To: guix-devel
* gnu/packages/statistics.scm (r-domc): New variable.
---
gnu/packages/statistics.scm | 23 +++++++++++++++++++++++
1 file changed, 23 insertions(+)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 6d5ee67..45e50b6 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2267,6 +2267,29 @@ parallel.")
using the parallel package.")
(license license:gpl2+)))
+(define-public r-domc
+ (package
+ (name "r-domc")
+ (version "1.3.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "doMC" version))
+ (sha256
+ (base32
+ "0y47jl6g4f83r14pj8bafdzq1phj7bxy5dwyz3k43d2rr8phk8bn"))))
+ (properties `((upstream-name . "doMC")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-foreach" ,r-foreach)
+ ("r-iterators" ,r-iterators)))
+ (home-page "http://cran.r-project.org/web/packages/doMC")
+ (synopsis "Foreach parallel adaptor for the 'parallel' package")
+ (description
+ "This package provides a parallel backend for the @code{%dopar%} function
+using the multicore functionality of the parallel package.")
+ (license license:gpl2+)))
+
(define-public r-dt
(package
(name "r-dt")
--
2.8.4
^ permalink raw reply related [flat|nested] 4+ messages in thread
end of thread, other threads:[~2016-07-06 15:32 UTC | newest]
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2016-07-06 15:31 [PATCH 1/4] gnu: Add r-ade4 Ricardo Wurmus
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2016-07-06 15:31 ` [PATCH 3/4] gnu: Add r-multitaper Ricardo Wurmus
2016-07-06 15:31 ` [PATCH 4/4] gnu: Add r-domc Ricardo Wurmus
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