From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ricardo Wurmus Subject: [PATCH] gnu: Add multiqc. Date: Tue, 28 Jun 2016 16:50:42 +0200 Message-ID: <20160628145042.25341-1-ricardo.wurmus@mdc-berlin.de> Mime-Version: 1.0 Content-Type: text/plain Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:37843) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bHuLw-0006aq-UF for guix-devel@gnu.org; Tue, 28 Jun 2016 10:51:06 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1bHuLs-0005cP-N4 for guix-devel@gnu.org; Tue, 28 Jun 2016 10:51:03 -0400 Received: from pegasus.bbbm.mdc-berlin.de ([141.80.25.20]:60307) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bHuLs-0005bh-Cu for guix-devel@gnu.org; Tue, 28 Jun 2016 10:51:00 -0400 Received: from localhost (localhost [127.0.0.1]) by pegasus.bbbm.mdc-berlin.de (Postfix) with ESMTP id A3ECC3810F4 for ; Tue, 28 Jun 2016 16:50:56 +0200 (CEST) Received: from pegasus.bbbm.mdc-berlin.de ([127.0.0.1]) by localhost (pegasus.bbbm.mdc-berlin.de [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id tTj7rRWUgYTH for ; Tue, 28 Jun 2016 16:50:45 +0200 (CEST) Received: from HTCATWO.mdc-berlin.net (puck.citx.mdc-berlin.de [141.80.36.101]) (using TLSv1 with cipher ECDHE-RSA-AES256-SHA (256/256 bits)) (No client certificate requested) by pegasus.bbbm.mdc-berlin.de (Postfix) with ESMTPS for ; Tue, 28 Jun 2016 16:50:44 +0200 (CEST) List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: guix-devel@gnu.org * gnu/packages/bioinformatics.scm (multiqc): New variable. --- gnu/packages/bioinformatics.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 04ed769..45595d0 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5321,3 +5321,33 @@ group or two ChIP groups run under different conditions.") (description "This program compares version strings. It intends to be a replacement for strverscmp.") (license license:gpl3+)))) + +(define-public multiqc + (package + (name "multiqc") + (version "0.6") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/23/d9/95a5e62eea95f220007d7a6683d0da1ee1d9f99e6932bcff793b6601ef15/multiqc-" + version ".tar.gz")) + (sha256 + (base32 + "0avw11h63ldpxy5pizc3wl1wa01ha7q10wb240nggsjz3jaqvyiy")))) + (build-system python-build-system) + (propagated-inputs + `(("python-jinja2" ,python-jinja2) + ("python-simplejson" ,python-simplejson) + ("python-pyyaml" ,python-pyyaml) + ("python-click" ,python-click) + ("python-matplotlib" ,python-matplotlib))) + (native-inputs + `(("python-setuptools" ,python-setuptools))) + (home-page "http://multiqc.info") + (synopsis "Aggregate bioinformatics analysis reports") + (description + "MultiQC is a tool to aggregate bioinformatics results across many +samples into a single report. It contains modules for a large number of +common bioinformatics tools.") + (license license:gpl3))) -- 2.8.4