[PATCH] Add R packages needed for updates.

[PATCH] Add R packages needed for updates.

[Ricardo Wurmus]

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Hi Guix,

I’m preparing to push patches to update all of our R packages.  Some
packages need new inputs so I’m adding them first with the attached
patches.  As soon as these patches are in I’ll push the simple updates
to our R packages.

~~ Ricardo


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From 38bbded2fcaa7679279583e990c1265c919d8eee Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Wed, 20 Apr 2016 14:12:40 +0200
Subject: [PATCH 1/4] gnu: Add r-praise.

* gnu/packages/statistics.scm (r-praise): New variable.
---
 gnu/packages/statistics.scm | 19 +++++++++++++++++++
 1 file changed, 19 insertions(+)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 616eb14..25065c9 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -863,6 +863,25 @@ New styles can also be created easily.  This package was inspired by the
 \"chalk\" JavaScript project.")
     (license license:expat)))
 
+(define-public r-praise
+  (package
+    (name "r-praise")
+    (version "1.0.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "praise" version))
+       (sha256
+        (base32
+         "1gfyypnvmih97p2r0php9qa39grzqpsdbq5g0fdsbpq5zms5w0sw"))))
+    (build-system r-build-system)
+    (home-page "https://github.com/gaborcsardi/praise")
+    (synopsis "Functions to praise users")
+    (description
+     "This package provides template functions to assist in building friendly
+R packages that praise their users.")
+    (license license:expat)))
+
 (define-public r-testthat
   (package
     (name "r-testthat")
-- 
2.7.3


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From f067f1c5d68662674f8400a9e48f6e9708241748 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Wed, 20 Apr 2016 14:13:06 +0200
Subject: [PATCH 2/4] gnu: Add r-openssl.

* gnu/packages/statistics.scm (r-openssl): New variable.
---
 gnu/packages/statistics.scm | 29 +++++++++++++++++++++++++++++
 1 file changed, 29 insertions(+)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 25065c9..781620c 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1345,6 +1345,35 @@ module, Java Server Pages, and Python's psp module.")
 collation, and NAMESPACE files.")
     (license license:gpl2+)))
 
+(define-public r-openssl
+  (package
+    (name "r-openssl")
+    (version "0.9.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "openssl" version))
+       (sha256
+        (base32
+         "1dbsaciz39zvsmcyxkmpfm5yxzrpw2iv2nb86525wn80q0cyv0cb"))))
+    (build-system r-build-system)
+    (inputs
+     `(("openssl" ,openssl)))
+    (home-page "https://github.com/jeroenooms/openssl")
+    (synopsis "Toolkit for encryption, signatures and certificates")
+    (description
+     "This package provides R bindings to OpenSSL libssl and libcrypto, plus
+custom SSH pubkey parsers.  It supports RSA, DSA and NIST curves P-256, P-384
+and P-521.  Cryptographic signatures can either be created and verified
+manually or via x509 certificates.  AES block cipher is used in CBC mode for
+symmetric encryption; RSA for asymmetric (public key) encryption.  High-level
+envelope functions combine RSA and AES for encrypting arbitrary sized data.
+Other utilities include key generators, hash functions (md5, sha1, sha256,
+etc), base64 encoder, a secure random number generator, and @code{bignum} math
+methods for manually performing crypto calculations on large multibyte
+integers.")
+    (license license:expat)))
+
 (define-public r-httr
   (package
     (name "r-httr")
-- 
2.7.3


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From 0d843ccfb27209e3be0bd820a8a9df8f0f7b6c1d Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Wed, 20 Apr 2016 14:14:17 +0200
Subject: [PATCH 3/4] gnu: Add r-tidyr.

* gnu/packages/statistics.scm (r-tidyr): New variable.
---
 gnu/packages/statistics.scm | 29 +++++++++++++++++++++++++++++
 1 file changed, 29 insertions(+)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 781620c..44553d5 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2413,6 +2413,35 @@ black-and-white.  They are also designed to be perceived by readers with the
 most common form of color blindness.")
     (license license:x11)))
 
+(define-public r-tidyr
+  (package
+    (name "r-tidyr")
+    (version "0.4.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "tidyr" version))
+       (sha256
+        (base32
+         "0xp6lyr2l4ix2mrilx4qmca7wm5qmbhvi24m4nf7qsgwp54gnv2h"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-dplyr" ,r-dplyr)
+       ("r-lazyeval" ,r-lazyeval)
+       ("r-magrittr" ,r-magrittr)
+       ("r-rcpp" ,r-rcpp)
+       ("r-stringi" ,r-stringi)))
+    (home-page "https://github.com/hadley/tidyr")
+    (synopsis "Tidy data with `spread()` and `gather()` functions")
+    (description
+     "tidyr is a reframing of the reshape2 package designed to accompany the
+tidy data framework, and to work hand-in-hand with magrittr and dplyr to build
+a solid pipeline for data analysis.  It is designed specifically for tidying
+data, not the general reshaping that reshape2 does, or the general aggregation
+that reshape did.  In particular, built-in methods only work for data frames,
+and tidyr provides no margins or aggregation.")
+    (license license:expat)))
+
 (define-public r-plotly
   (package
     (name "r-plotly")
-- 
2.7.3


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From 88b9525b7eee5b449d393e87c4f6bde5a7ffab9f Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Wed, 20 Apr 2016 14:14:41 +0200
Subject: [PATCH 4/4] gnu: Add r-hexbin.

* gnu/packages/statistics.scm (r-hexbin): New variable.
---
 gnu/packages/statistics.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 44553d5..8992024 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2442,6 +2442,29 @@ that reshape did.  In particular, built-in methods only work for data frames,
 and tidyr provides no margins or aggregation.")
     (license license:expat)))
 
+(define-public r-hexbin
+  (package
+    (name "r-hexbin")
+    (version "1.27.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "hexbin" version))
+       (sha256
+        (base32
+         "0xi6fbf1fvyn2gffr052n3viibqzpr3603sgi4xaminbzja4syjh"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-lattice" ,r-lattice)))
+    (native-inputs
+     `(("gfortran" ,gfortran)))
+    (home-page "http://github.com/edzer/hexbin")
+    (synopsis "Hexagonal binning routines")
+    (description
+     "This package provides binning and plotting functions for hexagonal bins.
+It uses and relies on grid graphics and formal (S4) classes and methods.")
+    (license license:gpl2+)))
+
 (define-public r-plotly
   (package
     (name "r-plotly")
-- 
2.7.3

Re: [PATCH] Add R packages needed for updates.

[Leo Famulari]

On Wed, Apr 20, 2016 at 02:19:50PM +0200, Ricardo Wurmus wrote:
> Hi Guix,
> 
> I’m preparing to push patches to update all of our R packages.  Some
> packages need new inputs so I’m adding them first with the attached
> patches.  As soon as these patches are in I’ll push the simple updates
> to our R packages.

They look reasonable. Well, except for r-praise. That one looks silly ;)

Re: [PATCH] Add R packages needed for updates.

[Ludovic Courtès]

Leo Famulari <leo@famulari.name> skribis:

> On Wed, Apr 20, 2016 at 02:19:50PM +0200, Ricardo Wurmus wrote:
>> Hi Guix,
>> 
>> I’m preparing to push patches to update all of our R packages.  Some
>> packages need new inputs so I’m adding them first with the attached
>> patches.  As soon as these patches are in I’ll push the simple updates
>> to our R packages.
>
> They look reasonable.

Seconded!

> Well, except for r-praise. That one looks silly ;)

:-)

Ludo’.