From mboxrd@z Thu Jan 1 00:00:00 1970 From: Leo Famulari Subject: Re: [PATCH] Add r-doparallel. Date: Fri, 18 Mar 2016 14:44:31 -0400 Message-ID: <20160318184431.GC9682@jasmine> References: Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:50363) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1agzNy-0004n5-Ef for guix-devel@gnu.org; Fri, 18 Mar 2016 14:44:35 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1agzNv-00029O-Lg for guix-devel@gnu.org; Fri, 18 Mar 2016 14:44:34 -0400 Received: from out2-smtp.messagingengine.com ([66.111.4.26]:56927) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1agzNv-00029K-HT for guix-devel@gnu.org; Fri, 18 Mar 2016 14:44:31 -0400 Content-Disposition: inline In-Reply-To: List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org To: Ricardo Wurmus Cc: guix-devel On Thu, Mar 17, 2016 at 05:22:04PM +0100, Ricardo Wurmus wrote: > Attached are four patches for useful R packages. LGTM! > > From ed52995e0723a9828f21e741f92439934470c4ac Mon Sep 17 00:00:00 2001 > From: Ricardo Wurmus > Date: Thu, 17 Mar 2016 17:13:59 +0100 > Subject: [PATCH 1/4] gnu: Add r-iterators. > > * gnu/packages/statistics.scm (r-iterators): New variable. > --- > gnu/packages/statistics.scm | 20 ++++++++++++++++++++ > 1 file changed, 20 insertions(+) > > diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm > index 3d44533..217f365 100644 > --- a/gnu/packages/statistics.scm > +++ b/gnu/packages/statistics.scm > @@ -1679,6 +1679,26 @@ matrices. It includes Cholesky decomposition and backsolving as well as > standard R subsetting and Kronecker products.") > (license license:gpl2+))) > > +(define-public r-iterators > + (package > + (name "r-iterators") > + (version "1.0.8") > + (source > + (origin > + (method url-fetch) > + (uri (cran-uri "iterators" version)) > + (sha256 > + (base32 > + "1f057pabs7ss9h1n244can26qsi5n2k3salrdk0b0vkphlrs4kmf")))) > + (build-system r-build-system) > + (home-page "http://cran.r-project.org/web/packages/iterators") > + (synopsis "Iterator construct for R") > + (description > + "This package provides support for iterators, which allow a programmer to > +traverse through all the elements of a vector, list, or other collection of > +data.") > + (license license:asl2.0))) > + > (define-public r-dt > (package > (name "r-dt") > -- > 2.1.0 > > From eb559b54738d68a8dba5dd6b7089e4a20b6b8026 Mon Sep 17 00:00:00 2001 > From: Ricardo Wurmus > Date: Thu, 17 Mar 2016 17:14:22 +0100 > Subject: [PATCH 2/4] gnu: Add r-codetools. > > * gnu/packages/statistics.scm (r-codetools): New variable. > --- > gnu/packages/statistics.scm | 18 ++++++++++++++++++ > 1 file changed, 18 insertions(+) > > diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm > index 217f365..97481b8 100644 > --- a/gnu/packages/statistics.scm > +++ b/gnu/packages/statistics.scm > @@ -1699,6 +1699,24 @@ traverse through all the elements of a vector, list, or other collection of > data.") > (license license:asl2.0))) > > +(define-public r-codetools > + (package > + (name "r-codetools") > + (version "0.2-14") > + (source > + (origin > + (method url-fetch) > + (uri (cran-uri "codetools" version)) > + (sha256 > + (base32 > + "0y9r4m2b8xgavr89sc179knzwpz54xljbc1dinpq2q07i4xn0397")))) > + (build-system r-build-system) > + (home-page "http://cran.r-project.org/web/packages/codetools") > + (synopsis "Code analysis tools for R") > + (description "This package provides code analysis tools for R to check R > +code for possible problems.") > + (license (list license:gpl2+ license:gpl3+)))) > + > (define-public r-dt > (package > (name "r-dt") > -- > 2.1.0 > > From b752b7f2457d23a96d6556d9e24debb03219bc20 Mon Sep 17 00:00:00 2001 > From: Ricardo Wurmus > Date: Thu, 17 Mar 2016 17:14:45 +0100 > Subject: [PATCH 3/4] gnu: Add r-foreach. > > * gnu/packages/statistics.scm (r-foreach): New variable. > --- > gnu/packages/statistics.scm | 28 ++++++++++++++++++++++++++++ > 1 file changed, 28 insertions(+) > > diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm > index 97481b8..8116f50 100644 > --- a/gnu/packages/statistics.scm > +++ b/gnu/packages/statistics.scm > @@ -1717,6 +1717,34 @@ data.") > code for possible problems.") > (license (list license:gpl2+ license:gpl3+)))) > > +(define-public r-foreach > + (package > + (name "r-foreach") > + (version "1.4.3") > + (source > + (origin > + (method url-fetch) > + (uri (cran-uri "foreach" version)) > + (sha256 > + (base32 > + "10aqsd3rxz03s1qdb6gsb1cj89mj4vmh491zfpin4skj1xvkzw0y")))) > + (build-system r-build-system) > + (propagated-inputs > + `(("r-codetools" ,r-codetools) > + ("r-iterators" ,r-iterators))) > + (home-page "http://cran.r-project.org/web/packages/foreach") > + (synopsis "Foreach looping construct for R") > + (description > + "This package provides support for the @code{foreach} looping construct. > +@code{foreach} is an idiom that allows for iterating over elements in a > +collection, without the use of an explicit loop counter. This package in > +particular is intended to be used for its return value, rather than for its > +side effects. In that sense, it is similar to the standard @code{lapply} > +function, but doesn't require the evaluation of a function. Using > +@code{foreach} without side effects also facilitates executing the loop in > +parallel.") > + (license license:asl2.0))) > + > (define-public r-dt > (package > (name "r-dt") > -- > 2.1.0 > > From c386783cdba3798c881e0c8ff4b94baa785208f1 Mon Sep 17 00:00:00 2001 > From: Ricardo Wurmus > Date: Thu, 17 Mar 2016 17:15:02 +0100 > Subject: [PATCH 4/4] gnu: Add r-doparallel. > > * gnu/packages/statistics.scm (r-doparallel): New variable. > --- > gnu/packages/statistics.scm | 23 +++++++++++++++++++++++ > 1 file changed, 23 insertions(+) > > diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm > index 8116f50..15c6823 100644 > --- a/gnu/packages/statistics.scm > +++ b/gnu/packages/statistics.scm > @@ -1745,6 +1745,29 @@ function, but doesn't require the evaluation of a function. Using > parallel.") > (license license:asl2.0))) > > +(define-public r-doparallel > + (package > + (name "r-doparallel") > + (version "1.0.10") > + (source > + (origin > + (method url-fetch) > + (uri (cran-uri "doParallel" version)) > + (sha256 > + (base32 > + "1mddx25l25pw9d0csnx2q203dbg5hbrhkr1f08kw0p02a1lln0kh")))) > + (properties `((upstream-name . "doParallel"))) > + (build-system r-build-system) > + (propagated-inputs > + `(("r-foreach" ,r-foreach) > + ("r-iterators" ,r-iterators))) > + (home-page "http://cran.r-project.org/web/packages/doParallel") > + (synopsis "Foreach parallel adaptor for the 'parallel' package") > + (description > + "This package provides a parallel backend for the @code{%dopar%} function > +using the parallel package.") > + (license license:gpl2+))) > + > (define-public r-dt > (package > (name "r-dt") > -- > 2.1.0 >