From mboxrd@z Thu Jan  1 00:00:00 1970
From: Pjotr Prins <pjotr.public12@thebird.nl>
Subject: Re: [PATCH] gnu: Add freebayes.
Date: Wed, 9 Mar 2016 07:44:25 +0100
Message-ID: <20160309064425.GA16207@thebird.nl>
References: <874mchc6uz.fsf@gnu.org>
 <20160308235515.GC24107@jasmine>
Mime-Version: 1.0
Content-Type: text/plain; charset=us-ascii
Return-path: <guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org>
Received: from eggs.gnu.org ([2001:4830:134:3::10]:40438)
	by lists.gnu.org with esmtp (Exim 4.71)
	(envelope-from <wrk@mail.thebird.nl>) id 1adXsS-0004c3-V0
	for guix-devel@gnu.org; Wed, 09 Mar 2016 01:45:49 -0500
Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71)
	(envelope-from <wrk@mail.thebird.nl>) id 1adXsP-00060O-Pq
	for guix-devel@gnu.org; Wed, 09 Mar 2016 01:45:48 -0500
Content-Disposition: inline
In-Reply-To: <20160308235515.GC24107@jasmine>
List-Id: "Development of GNU Guix and the GNU System distribution."
	<guix-devel.gnu.org>
List-Unsubscribe: <https://lists.gnu.org/mailman/options/guix-devel>,
	<mailto:guix-devel-request@gnu.org?subject=unsubscribe>
List-Archive: <http://lists.gnu.org/archive/html/guix-devel>
List-Post: <mailto:guix-devel@gnu.org>
List-Help: <mailto:guix-devel-request@gnu.org?subject=help>
List-Subscribe: <https://lists.gnu.org/mailman/listinfo/guix-devel>,
	<mailto:guix-devel-request@gnu.org?subject=subscribe>
Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org
Sender: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org
To: Leo Famulari <leo@famulari.name>
Cc: guix-devel@gnu.org

On Tue, Mar 08, 2016 at 06:55:15PM -0500, Leo Famulari wrote:
> Thanks again for putting such a complicated patch together! We will find
> the best way to add freebayes to the distribution :)

+1. Freebayes is (in my opinion) one of the best variant callers out
there, both for SNPs and somatic (i.e. cancer) and a true free
competitor to the not-so-free GATK caller. 

It is great to be able to deploy it with GNU Guix (I am using Roel's
package already).

Pj.