[PATCH] Add r-graph to fix r-topgo.

[PATCH] Add r-graph to fix r-topgo.

[Ricardo Wurmus]

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From c58ff030a4733db2a3ded8100a185a316ad68a22 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Wed, 13 Jan 2016 16:26:13 +0100
Subject: [PATCH 1/2] gnu: Add r-graph.

* gnu/packages/bioinformatics.scm (r-graph): New variable.
---
 gnu/packages/bioinformatics.scm | 19 +++++++++++++++++++
 1 file changed, 19 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index fa208c8..40a38eb 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4162,6 +4162,25 @@ extracting the desired features in a convenient format.")
 information about the latest version of the Gene Ontologies.")
     (license license:artistic2.0)))
 
+(define-public r-graph
+  (package
+    (name "r-graph")
+    (version "1.48.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "graph" version))
+              (sha256
+               (base32
+                "16w75rji3kv24gfv44w66y1a2y75ax26rl470y3ypna0ndc3rrcd"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-biocgenerics" ,r-biocgenerics)))
+    (home-page "http://bioconductor.org/packages/graph")
+    (synopsis "Handle graph data structures in R")
+    (description
+     "This package implements some simple graph handling capabilities for R.")
+    (license license:artistic2.0)))
+
 (define-public r-topgo
   (package
     (name "r-topgo")
-- 
2.1.0


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From a7e2c7e04f1521368dfa12ba39b8064e64c6c2a9 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Wed, 13 Jan 2016 16:26:37 +0100
Subject: [PATCH 2/2] gnu: r-topgo: Add missing input.

* gnu/packages/bioinformatics.scm (r-topgo)[propagated-inputs]: Add
  "r-graph".
---
 gnu/packages/bioinformatics.scm | 1 +
 1 file changed, 1 insertion(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 40a38eb..9b5bd12 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4199,6 +4199,7 @@ information about the latest version of the Gene Ontologies.")
        ("r-biobase" ,r-biobase)
        ("r-biocgenerics" ,r-biocgenerics)
        ("r-go-db" ,r-go-db)
+       ("r-graph" ,r-graph)
        ("r-sparsem" ,r-sparsem)))
     (home-page "http://bioconductor.org/packages/topGO")
     (synopsis "Enrichment analysis for gene ontology")
-- 
2.1.0

Re: [PATCH] Add r-graph to fix r-topgo.

[Andreas Enge]

I trust you tried them, they look good to me.

Andreas

Re: [PATCH] Add r-graph to fix r-topgo.

[Ricardo Wurmus]

Andreas Enge <andreas@enge.fr> writes:

> I trust you tried them, they look good to me.

Thanks.  Pushed (a couple of days ago, but forgot to reply).

~~ Ricardo