all messages for Guix-related lists mirrored at yhetil.org
 help / color / mirror / code / Atom feed
* [PATCH] Add r-graph to fix r-topgo.
@ 2016-02-17 10:30 Ricardo Wurmus
  2016-02-18 20:23 ` Andreas Enge
  0 siblings, 1 reply; 3+ messages in thread
From: Ricardo Wurmus @ 2016-02-17 10:30 UTC (permalink / raw)
  To: guix-devel@gnu.org

[-- Warning: decoded text below may be mangled, UTF-8 assumed --]
[-- Attachment #1: 0001-gnu-Add-r-graph.patch --]
[-- Type: text/x-patch, Size: 1462 bytes --]

From c58ff030a4733db2a3ded8100a185a316ad68a22 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Wed, 13 Jan 2016 16:26:13 +0100
Subject: [PATCH 1/2] gnu: Add r-graph.

* gnu/packages/bioinformatics.scm (r-graph): New variable.
---
 gnu/packages/bioinformatics.scm | 19 +++++++++++++++++++
 1 file changed, 19 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index fa208c8..40a38eb 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4162,6 +4162,25 @@ extracting the desired features in a convenient format.")
 information about the latest version of the Gene Ontologies.")
     (license license:artistic2.0)))
 
+(define-public r-graph
+  (package
+    (name "r-graph")
+    (version "1.48.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "graph" version))
+              (sha256
+               (base32
+                "16w75rji3kv24gfv44w66y1a2y75ax26rl470y3ypna0ndc3rrcd"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-biocgenerics" ,r-biocgenerics)))
+    (home-page "http://bioconductor.org/packages/graph")
+    (synopsis "Handle graph data structures in R")
+    (description
+     "This package implements some simple graph handling capabilities for R.")
+    (license license:artistic2.0)))
+
 (define-public r-topgo
   (package
     (name "r-topgo")
-- 
2.1.0


[-- Warning: decoded text below may be mangled, UTF-8 assumed --]
[-- Attachment #2: 0002-gnu-r-topgo-Add-missing-input.patch --]
[-- Type: text/x-patch, Size: 937 bytes --]

From a7e2c7e04f1521368dfa12ba39b8064e64c6c2a9 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Date: Wed, 13 Jan 2016 16:26:37 +0100
Subject: [PATCH 2/2] gnu: r-topgo: Add missing input.

* gnu/packages/bioinformatics.scm (r-topgo)[propagated-inputs]: Add
  "r-graph".
---
 gnu/packages/bioinformatics.scm | 1 +
 1 file changed, 1 insertion(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 40a38eb..9b5bd12 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4199,6 +4199,7 @@ information about the latest version of the Gene Ontologies.")
        ("r-biobase" ,r-biobase)
        ("r-biocgenerics" ,r-biocgenerics)
        ("r-go-db" ,r-go-db)
+       ("r-graph" ,r-graph)
        ("r-sparsem" ,r-sparsem)))
     (home-page "http://bioconductor.org/packages/topGO")
     (synopsis "Enrichment analysis for gene ontology")
-- 
2.1.0


^ permalink raw reply related	[flat|nested] 3+ messages in thread

* Re: [PATCH] Add r-graph to fix r-topgo.
  2016-02-17 10:30 [PATCH] Add r-graph to fix r-topgo Ricardo Wurmus
@ 2016-02-18 20:23 ` Andreas Enge
  2016-02-29  7:20   ` Ricardo Wurmus
  0 siblings, 1 reply; 3+ messages in thread
From: Andreas Enge @ 2016-02-18 20:23 UTC (permalink / raw)
  To: Ricardo Wurmus; +Cc: guix-devel@gnu.org

I trust you tried them, they look good to me.

Andreas

^ permalink raw reply	[flat|nested] 3+ messages in thread

* Re: [PATCH] Add r-graph to fix r-topgo.
  2016-02-18 20:23 ` Andreas Enge
@ 2016-02-29  7:20   ` Ricardo Wurmus
  0 siblings, 0 replies; 3+ messages in thread
From: Ricardo Wurmus @ 2016-02-29  7:20 UTC (permalink / raw)
  To: Andreas Enge; +Cc: guix-devel@gnu.org


Andreas Enge <andreas@enge.fr> writes:

> I trust you tried them, they look good to me.

Thanks.  Pushed (a couple of days ago, but forgot to reply).

~~ Ricardo

^ permalink raw reply	[flat|nested] 3+ messages in thread

end of thread, other threads:[~2016-02-29  7:20 UTC | newest]

Thread overview: 3+ messages (download: mbox.gz follow: Atom feed
-- links below jump to the message on this page --
2016-02-17 10:30 [PATCH] Add r-graph to fix r-topgo Ricardo Wurmus
2016-02-18 20:23 ` Andreas Enge
2016-02-29  7:20   ` Ricardo Wurmus

Code repositories for project(s) associated with this external index

	https://git.savannah.gnu.org/cgit/guix.git

This is an external index of several public inboxes,
see mirroring instructions on how to clone and mirror
all data and code used by this external index.