Massive graph

Massive graph

[Pjotr Prins]

I am packaging the software that makes up http://genenetwork.org/.

  http://biobeat.org/gn2.svg

or

  http://biobeat.org/gn2.eps

Amazing. And there is more to come.

Pj.
- 

Re: Massive graph

[Ricardo Wurmus]

Pjotr Prins <pjotr.public12@thebird.nl> writes:

> I am packaging the software that makes up http://genenetwork.org/.
>
>   http://biobeat.org/gn2.svg

Woah!  Nice how this gets close to the complexity of gene networks,
e.g. this one: http://www.john.ranola.org/Files/RadNetFull.pdf

~~ Ricardo

Re: Massive graph

[Pjotr Prins]

On Sat, Feb 13, 2016 at 11:15:14PM +0100, Ricardo Wurmus wrote:
> 
> Pjotr Prins <pjotr.public12@thebird.nl> writes:
> 
> > I am packaging the software that makes up http://genenetwork.org/.
> >
> >   http://biobeat.org/gn2.svg
> 
> Woah!  Nice how this gets close to the complexity of gene networks,
> e.g. this one: http://www.john.ranola.org/Files/RadNetFull.pdf

We could do a hair-ball of the full Guix repository at some point :)

Pj.
-- 

Re: Massive graph

[Leo Famulari]

On Sat, Feb 13, 2016 at 11:30:11PM +0100, Pjotr Prins wrote:
> On Sat, Feb 13, 2016 at 11:15:14PM +0100, Ricardo Wurmus wrote:
> > 
> > Pjotr Prins <pjotr.public12@thebird.nl> writes:
> > 
> > > I am packaging the software that makes up http://genenetwork.org/.
> > >
> > >   http://biobeat.org/gn2.svg
> > 
> > Woah!  Nice how this gets close to the complexity of gene networks,
> > e.g. this one: http://www.john.ranola.org/Files/RadNetFull.pdf
> 
> We could do a hair-ball of the full Guix repository at some point :)

I've killed `dot` after several minutes of trying to render a really
large graph in PNG format. I wonder if it's up to the task!

> 
> Pj.
> -- 
> 

Re: Massive graph

[Ben Woodcroft]

On 14/02/16 08:45, Leo Famulari wrote:
> On Sat, Feb 13, 2016 at 11:30:11PM +0100, Pjotr Prins wrote:
>> On Sat, Feb 13, 2016 at 11:15:14PM +0100, Ricardo Wurmus wrote:
>>> Pjotr Prins <pjotr.public12@thebird.nl> writes:
>>>
>>>> I am packaging the software that makes up http://genenetwork.org/.
>>>>
>>>>    http://biobeat.org/gn2.svg
>>> Woah!  Nice how this gets close to the complexity of gene networks,
>>> e.g. this one: http://www.john.ranola.org/Files/RadNetFull.pdf
>> We could do a hair-ball of the full Guix repository at some point :)
> I've killed `dot` after several minutes of trying to render a really
> large graph in PNG format. I wonder if it's up to the task!
 From memory of probably outdated versions, svg output is much more 
efficient, maybe give that a go.

ben

Re: Massive graph

[Leo Famulari]

On Sun, Feb 14, 2016 at 09:13:28AM +1000, Ben Woodcroft wrote:
> 
> 
> On 14/02/16 08:45, Leo Famulari wrote:
> >On Sat, Feb 13, 2016 at 11:30:11PM +0100, Pjotr Prins wrote:
> >>On Sat, Feb 13, 2016 at 11:15:14PM +0100, Ricardo Wurmus wrote:
> >>>Pjotr Prins <pjotr.public12@thebird.nl> writes:
> >>>
> >>>>I am packaging the software that makes up http://genenetwork.org/.
> >>>>
> >>>>   http://biobeat.org/gn2.svg
> >>>Woah!  Nice how this gets close to the complexity of gene networks,
> >>>e.g. this one: http://www.john.ranola.org/Files/RadNetFull.pdf
> >>We could do a hair-ball of the full Guix repository at some point :)
> >I've killed `dot` after several minutes of trying to render a really
> >large graph in PNG format. I wonder if it's up to the task!
> From memory of probably outdated versions, svg output is much more
> efficient, maybe give that a go.

I noticed it was a lot easier on my web browser! I will use it in the
future.

> 
> ben

Re: Massive graph

[Ludovic Courtès]

For those big graphs I think we need renderers and interactive viewers
like Tulip or something based on d3.js.

Ludo’.