From: Pjotr Prins <pjotr.public12@thebird.nl>
To: "Thompson, David" <dthompson2@worcester.edu>
Cc: guix-devel <guix-devel@gnu.org>
Subject: [PATCH] gnu: Add ruby-bio-locus.
Date: Mon, 14 Sep 2015 16:32:27 +0200 [thread overview]
Message-ID: <20150914143227.GA29997@thebird.nl> (raw)
In-Reply-To: <CAJ=RwfaTQD36VcV2YPYe+cE3XKvT=Oq0hfEb8JDiKyjDNDqoMg@mail.gmail.com>
* gnu/packages/ruby.scm (ruby-bio-locus): New variable.
---
gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 03eb2df..c4ba0e0 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2616,3 +2616,27 @@ data in the form of VCF files.")
;; The license is declared as LGPLv3 in the README and
;; at http://vcftools.sourceforge.net/license.html
(license license:lgpl3)))
+
+(define-public bio-locus
+ (package
+ (name "bio-locus")
+ (version "0.0.7")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (rubygems-uri "bio-locus" version))
+ (sha256
+ (base32
+ "02vmrxyimkj9sahsp4zhfhnmbvz6dbbqz1y01vglf8cbwvkajfl0"))))
+ (build-system ruby-build-system)
+ (native-inputs
+ `(("ruby-rspec" ,ruby-rspec)))
+ (synopsis "Tool for fast querying of genome locations")
+ (description
+ "Bio-locus is a tabix-like tool for fast querying of genome
+locations. Many file formats in bioinformatics contain records that
+start with a chromosome name and a position for a SNP, or a start-end
+position for indels. Bio-locus allows users to store this chr+pos or
+chr+pos+alt information in a fast database.")
+ (home-page "https://github.com/pjotrp/bio-locus")
+ (license license:expat)))
--
2.4.3
next prev parent reply other threads:[~2015-09-14 14:34 UTC|newest]
Thread overview: 6+ messages / expand[flat|nested] mbox.gz Atom feed top
2015-09-14 13:24 [PATCH] gnu: Add ruby-bio-locus Pjotr Prins
2015-09-14 14:01 ` Thompson, David
2015-09-14 14:18 ` Pjotr Prins
2015-09-14 14:30 ` Thompson, David
2015-09-14 14:32 ` Pjotr Prins [this message]
2015-09-14 19:19 ` Thompson, David
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