From mboxrd@z Thu Jan 1 00:00:00 1970 From: Andreas Enge Subject: Re: [PATCH] gnu: bedtools: Update to 2.24.0. Date: Sat, 25 Jul 2015 19:20:40 +0200 Message-ID: <20150725172040.GA25699@debian> References: <55B254A6.3050403@uq.edu.au> <87a8ukopcv.fsf@netris.org> <20150725090200.GA3669@debian> <55B387C1.7060702@uq.edu.au> <55B388E3.2030305@uq.edu.au> <20150725131035.GA8219@debian> <55B39135.7030207@uq.edu.au> Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:46467) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1ZJ382-0001UY-FG for guix-devel@gnu.org; Sat, 25 Jul 2015 13:20:55 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1ZJ37x-0004Qu-A8 for guix-devel@gnu.org; Sat, 25 Jul 2015 13:20:54 -0400 Received: from mout.kundenserver.de ([212.227.126.187]:60757) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1ZJ37x-0004Qp-00 for guix-devel@gnu.org; Sat, 25 Jul 2015 13:20:49 -0400 Content-Disposition: inline In-Reply-To: <55B39135.7030207@uq.edu.au> List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org To: Ben Woodcroft Cc: guix-devel@gnu.org Hi Ben, thanks a lot! I made a few small modifications and pushed: On Sat, Jul 25, 2015 at 11:37:57PM +1000, Ben Woodcroft wrote: > * gnu/packages/patches/bedtools-32bit-compilation.patch: New file. > * gnu/packages/bioinformatics.scm (bedtools)[source]: Add patch. gnu-system.am was also modified. > + ;; Fixed in upstream, see > + ;; https://github.com/arq5x/bedtools2/issues/271 I moved this into the patch, we usually mention its rationale there. The package still compiles on x86_64, let us hope that this patch solves the problem on the other architectures! Andreas