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From: Sharlatan Hellseher <sharlatanus@gmail.com>
To: 74497@debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus@gmail.com>,
	Andreas Enge <andreas@enge.fr>, Eric Bavier <bavier@posteo.net>,
	Sharlatan Hellseher <sharlatanus@gmail.com>
Subject: [bug#74497] [PATCH 44/46] gnu: python-yt: Update to 4.4.0.
Date: Sat, 23 Nov 2024 19:51:31 +0000	[thread overview]
Message-ID: <1a50cfeedcf5faf741094faa3db1715ab89eaf9d.1732384228.git.sharlatanus@gmail.com> (raw)
In-Reply-To: <cover.1732384228.git.sharlatanus@gmail.com>

* gnu/packages/astronomy.scm (python-yt): Update to 4.4.0.
[arguments]<test-flags>: Disable some failing tests and tests requiring
network access.
[propagated-inputs]: Add python-astropy, python-cartopy,
python-glue-core, python-h5py, python-netcdf4, python-pandas,
python-pooch, python-regions, python-requests, and python-xarray.
[native-inputs]: Remove python-nose, python-nose-exclude, and
python-nose-timer; add nss-certs-for-test.

Change-Id: Ia868892b81fb8c5fc72ae20040b5f70ef936ff78
---
 gnu/packages/astronomy.scm | 42 ++++++++++++++++++++++++++++++--------
 1 file changed, 34 insertions(+), 8 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index aec9cc330a..858fb75d45 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -6584,19 +6584,30 @@ (define-public python-wiimatch
 (define-public python-yt
   (package
     (name "python-yt")
-    (version "4.3.1")
+    (version "4.4.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "yt" version))
        (sha256
-        (base32 "03jy35vyniyd1pd3sv0zpd2f3ks2iyqw65xv28ids8nw6v1vavbv"))))
+        (base32 "1mf084wp0wrhi17npzbyz42lh3xwlc2hggr8h4pmighsnafdy58f"))))
     (build-system pyproject-build-system)
     (arguments
      (list
       #:build-backend "setuptools.build_meta"
       #:test-flags
-      #~(list "--numprocesses" (number->string (parallel-job-count)))
+      #~(list "--numprocesses" (number->string (parallel-job-count))
+              "-k" (string-join
+                    ;; Tests requiring networking.
+                    (list "not test_load_sample_timeout"
+                          "test_unknown_filename"
+                          "test_typo_filename"
+                          "test_data_dir_broken"
+                          "test_registry_byte_size_dtype"
+                          "test_registry_byte_size_sign"
+                          ;; AssertionError: Arrays are not equal
+                          "test_field_cut_off_axis_octree")
+                    " and not "))
       #:phases
       #~(modify-phases %standard-phases
          (add-after 'unpack 'relax-requirements
@@ -6612,10 +6623,8 @@ (define-public python-yt
               (setenv "HOME" "/tmp")
               (invoke "python" "setup.py" "build_ext" "--inplace"))))))
     (native-inputs
-     (list python-cython-3
-           python-nose
-           python-nose-exclude
-           python-nose-timer
+     (list nss-certs-for-test
+           python-cython-3
            python-pyaml
            python-pytest
            python-pytest-mpl
@@ -6634,7 +6643,24 @@ (define-public python-yt
            python-pillow
            python-tomli-w
            python-tqdm
-           python-unyt))
+           python-unyt
+           ;; Optional
+           ;; python-arm-pyart ; not packed yet
+           ;; python-f90nml
+           ;; python-firefly
+           ;; python-miniball
+           ;; python-pyx
+           ;; python-ratarmount
+           python-astropy
+           python-cartopy
+           python-glue-core
+           python-h5py
+           python-netcdf4
+           python-pandas
+           python-pooch
+           python-regions
+           python-requests
+           python-xarray))
     (home-page "http://yt-project.org/")
     (synopsis "Analyzing and visualizing volumetric data framework")
     (description
-- 
2.46.0





  parent reply	other threads:[~2024-11-23 20:41 UTC|newest]

Thread overview: 47+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2024-11-23 19:48 [bug#74497] [PATCH 00/46] Astro update 2024/11 Sharlatan Hellseher
2024-11-23 19:50 ` [bug#74497] [PATCH 01/46] gnu: Add cdf Sharlatan Hellseher
2024-11-23 19:50 ` [bug#74497] [PATCH 02/46] gnu: Add julia-astroangles Sharlatan Hellseher
2024-11-23 19:50 ` [bug#74497] [PATCH 03/46] gnu: Add python-kalepy Sharlatan Hellseher
2024-11-23 19:50 ` [bug#74497] [PATCH 04/46] gnu: Add python-george Sharlatan Hellseher
2024-11-23 19:50 ` [bug#74497] [PATCH 05/46] gnu: Add python-hasasia Sharlatan Hellseher
2024-11-23 19:50 ` [bug#74497] [PATCH 06/46] gnu: Add python-cosmopy Sharlatan Hellseher
2024-11-23 19:50 ` [bug#74497] [PATCH 07/46] gnu: Add python-holodeck Sharlatan Hellseher
2024-11-23 19:50 ` [bug#74497] [PATCH 08/46] gnu: Add python-vispy Sharlatan Hellseher
2024-11-23 19:50 ` [bug#74497] [PATCH 09/46] gnu: Add python-spisea Sharlatan Hellseher
2024-11-23 19:50 ` [bug#74497] [PATCH 10/46] gnu: gpredict: Update commentary note Sharlatan Hellseher
2024-11-23 19:50 ` [bug#74497] [PATCH 11/46] gnu: healpix-source: " Sharlatan Hellseher
2024-11-23 19:50 ` [bug#74497] [PATCH 12/46] gnu: imppg: Update to 1.9.2-beta Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 13/46] gnu: libpasastro: Update to 1.4.3 Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 14/46] gnu: python-asdf-astropy: Update to 0.7.0 Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 15/46] gnu: python-astropy-iers-data: Update to 0.2024.11.18.0.35.2 Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 16/46] gnu: python-astropy: Update to 6.1.6 Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 17/46] gnu: python-bayesicfitting: Update to 3.2.2 Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 18/46] gnu: python-crds: Update to 12.0.6 Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 19/46] gnu: python-drizzle: Update to 2.0.0 Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 20/46] gnu: Add python-puremagic Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 21/46] gnu: python-ginga: Update to 5.2.0 Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 22/46] gnu: python-aplpy: Update to 2.2.0 Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 23/46] gnu: python-astroalign: Update to 2.6.1 Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 24/46] gnu: python-astrodendro: Update to 0.3.1 Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 25/46] gnu: python-astrodendro: Fix indentation Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 26/46] gnu: python-cdflib: Update to 1.3.2 Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 27/46] gnu: python-jwst: Update to 1.16.1 Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 28/46] gnu: python-ndcube: Update to 2.2.4 Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 29/46] gnu: python-photutils: Update to 2.0.2 Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 30/46] gnu: python-pyerfa: Update to 2.0.1.5 Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 31/46] gnu: python-pyvo: Update to 1.6 Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 32/46] gnu: python-rad: Update to 0.22.0 Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 33/46] gnu: python-regularizepsf: Update to 1.0.2 Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 34/46] gnu: python-reproject: Update to 0.14.1 Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 35/46] gnu: python-roman-datamodels: Update to 0.22.0 Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 36/46] gnu: python-sep-pjw: Update to 1.3.7 Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 37/46] gnu: python-sncosmo: Update to 2.11.2 Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 38/46] gnu: python-specutils: Update to 1.19.0 Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 39/46] gnu: python-statmorph: Update to 0.6.0 Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 40/46] gnu: python-stcal: Update to 1.10.0 Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 41/46] gnu: python-stdatamodels: Update to 2.1.2 Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 42/46] gnu: python-stsynphot: Update to 1.4.0 Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 43/46] gnu: python-synphot: Update to 1.5.0 Sharlatan Hellseher
2024-11-23 19:51 ` Sharlatan Hellseher [this message]
2024-11-23 19:51 ` [bug#74497] [PATCH 45/46] gnu: python-yt-astro-analysis: Adjust inputs Sharlatan Hellseher
2024-11-23 19:51 ` [bug#74497] [PATCH 46/46] gnu: python-gatspy: " Sharlatan Hellseher

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