From: Arun Isaac <arunisaac@systemreboot.net>
To: 69736@debbugs.gnu.org
Cc: Arun Isaac <arunisaac@systemreboot.net>,
Arun Isaac <arunisaac@systemreboot.net>
Subject: [bug#69736] [PATCH 6/7] gnu: Add python-cwltool.
Date: Mon, 11 Mar 2024 18:22:41 +0000 [thread overview]
Message-ID: <14b0eae1181ad4bc93beaabd2aa1f2ad0d0884ae.1710180345.git.arunisaac@systemreboot.net> (raw)
In-Reply-To: <cover.1710180345.git.arunisaac@systemreboot.net>
* gnu/packages/bioinformatics.scm (python-cwltool): New variable.
Change-Id: Ic374d4c02b69c4e6c923d1cc17e629d4a3a6221c
---
gnu/packages/bioinformatics.scm | 12 ++++++++++++
1 file changed, 12 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b8ecea013c..68577ded17 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5326,6 +5326,18 @@ (define-public cwltool
CWL descriptions.")
(license license:asl2.0)))
+;; python-toil tightly integrates with cwltool using it as a library. So,
+;; create a library version of cwltool where inputs become propagated inputs.
+(define-public python-cwltool
+ (package
+ (inherit cwltool)
+ (name "python-cwltool")
+ (inputs
+ (list node))
+ (propagated-inputs
+ (modify-inputs (package-inputs cwltool)
+ (delete "node")))))
+
(define-public python-dendropy
(package
(name "python-dendropy")
--
2.41.0
next prev parent reply other threads:[~2024-03-11 18:26 UTC|newest]
Thread overview: 16+ messages / expand[flat|nested] mbox.gz Atom feed top
2024-03-11 18:11 [bug#69736] [PATCH 0/7] Add toil Arun Isaac
2024-03-11 18:22 ` [bug#69736] [PATCH 1/7] gnu: Add python-typing-extensions-4.10 Arun Isaac
2024-03-11 18:22 ` [bug#69736] [PATCH 2/7] gnu: Add python-pypubsub Arun Isaac
2024-03-11 18:22 ` [bug#69736] [PATCH 3/7] gnu: Add python-addict Arun Isaac
2024-03-11 18:22 ` [bug#69736] [PATCH 4/7] gnu: Add python-prefixed Arun Isaac
2024-03-11 18:22 ` [bug#69736] [PATCH 5/7] gnu: Add python-enlighten Arun Isaac
2024-03-11 18:22 ` Arun Isaac [this message]
2024-03-11 18:22 ` [bug#69736] [PATCH 7/7] gnu: Add python-toil Arun Isaac
2024-07-01 2:54 ` [bug#69736] [PATCH 0/7] Add toil jgart via Guix-patches via
2024-07-03 15:05 ` Arun Isaac
2024-07-03 15:07 ` [bug#69736] [PATCH v2 1/6] gnu: Add python-pypubsub Arun Isaac
2024-07-03 15:07 ` [bug#69736] [PATCH v2 2/6] gnu: Add python-addict Arun Isaac
2024-07-03 15:07 ` [bug#69736] [PATCH v2 3/6] gnu: Add python-prefixed Arun Isaac
2024-07-03 15:07 ` [bug#69736] [PATCH v2 4/6] gnu: Add python-enlighten Arun Isaac
2024-07-03 15:07 ` [bug#69736] [PATCH v2 5/6] gnu: Add python-cwltool Arun Isaac
2024-07-03 15:07 ` [bug#69736] [PATCH v2 6/6] gnu: Add python-toil Arun Isaac
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