From: Roel Janssen <roel@gnu.org>
To: 44304@debbugs.gnu.org
Subject: [bug#44304] [PATCH] gnu: Update htslib to 1.11.
Date: Thu, 29 Oct 2020 12:01:07 +0100 [thread overview]
Message-ID: <08b421af5c82326cae13054e014e926b6b3c4ece.camel@gnu.org> (raw)
In-Reply-To: <6ccd23fc29b49611b82d9cc26461dfc294796aa3.camel@gnu.org>
[-- Attachment #1: Type: text/plain, Size: 331 bytes --]
On Thu, 2020-10-29 at 11:44 +0100, Roel Janssen wrote:
> Dear Guix,
>
> I'd like to update htslib to 1.11. The patch is straightfoward.
>
> Kind regards,
> Roel Janssen
In addition to htslib, it'd be good to keep samtools and bcftools in
sync. So here are the patches for bcftools and samtools.
Kind regards,
Roel Janssen
[-- Attachment #2: 0003-gnu-Update-samtools-to-1.11.patch --]
[-- Type: text/x-patch, Size: 1374 bytes --]
From 4025b622017f6ff0f365bf827c0f4bf06603f9ed Mon Sep 17 00:00:00 2001
From: Roel Janssen <roel@gnu.org>
Date: Thu, 29 Oct 2020 11:58:02 +0100
Subject: [PATCH 3/3] gnu: Update samtools to 1.11.
* gnu/packages/bioinformatics.scm (samtools): Update to 1.11.
---
gnu/packages/bioinformatics.scm | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a428ba1fed..4c49b00252 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5613,7 +5613,7 @@ to the user's query of interest.")
(define-public samtools
(package
(name "samtools")
- (version "1.9")
+ (version "1.11")
(source
(origin
(method url-fetch)
@@ -5622,11 +5622,11 @@ to the user's query of interest.")
version "/samtools-" version ".tar.bz2"))
(sha256
(base32
- "10ilqbmm7ri8z431sn90lvbjwizd0hhkf9rcqw8j823hf26nhgq8"))
+ "1dp5wknak4arnw5ghhif9mmljlfnw5bgm91wib7z0j8wdjywx0z2"))
(modules '((guix build utils)))
(snippet '(begin
;; Delete bundled htslib.
- (delete-file-recursively "htslib-1.9")
+ (delete-file-recursively "htslib-1.11")
#t))))
(build-system gnu-build-system)
(arguments
--
2.26.2
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[-- Type: text/x-patch, Size: 1483 bytes --]
From 20a16449cd640f32798cb36f942eb44faaa9f661 Mon Sep 17 00:00:00 2001
From: Roel Janssen <roel@gnu.org>
Date: Thu, 29 Oct 2020 11:57:16 +0100
Subject: [PATCH 2/3] gnu: Update bcftools to 1.11.
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.11.
---
gnu/packages/bioinformatics.scm | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 09216f6a8d..a428ba1fed 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -313,7 +313,7 @@ BAM files.")
(define-public bcftools
(package
(name "bcftools")
- (version "1.9")
+ (version "1.11")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/samtools/bcftools/"
@@ -321,11 +321,11 @@ BAM files.")
version "/bcftools-" version ".tar.bz2"))
(sha256
(base32
- "1j3h638i8kgihzyrlnpj82xg1b23sijibys9hvwari3fy7kd0dkg"))
+ "0r508mp15pqzf8r1269kb4v5naw9zsvbwd3cz8s1yj7carsf9viw"))
(modules '((guix build utils)))
(snippet '(begin
;; Delete bundled htslib.
- (delete-file-recursively "htslib-1.9")
+ (delete-file-recursively "htslib-1.11")
#t))))
(build-system gnu-build-system)
(arguments
--
2.26.2
next prev parent reply other threads:[~2020-10-29 11:02 UTC|newest]
Thread overview: 4+ messages / expand[flat|nested] mbox.gz Atom feed top
2020-10-29 10:44 [bug#44304] [PATCH] gnu: Update htslib to 1.11 Roel Janssen
2020-10-29 11:01 ` Roel Janssen [this message]
2020-10-29 12:55 ` Ricardo Wurmus
2020-10-29 15:56 ` Roel Janssen
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