From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <66914@debbugs.gnu.org>
Cc: Ricardo Wurmus <rekado@elephly.net>
Subject: [bug#66914] [PATCH 2/2] gnu: Add r-dnamcrosshyb.
Date: Fri, 3 Nov 2023 14:41:00 +0100 [thread overview]
Message-ID: <045773685530dae0ff4ea375c219efc35f62a23b.1699018860.git.madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <fcb3821b9f4004beecb10c285fbfd4dd58d0c1b6.1699018860.git.madalinionel.patrascu@mdc-berlin.de>
* gnu/packages/bioconductor.scm (r-dnamcrosshyb): New variable.
Change-Id: I19e332e6adf0ce9cc721d89bb74a1aa709778873
---
gnu/packages/bioconductor.scm | 45 +++++++++++++++++++++++++++++++++++
1 file changed, 45 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ac09a079b4..d5d5e9d25d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -12636,6 +12636,51 @@ (define-public r-dnabarcodes
demultiplexed, i.e. assigned to their original reference barcode.")
(license license:gpl2)))
+;; It depends on Bioconductor packages
+(define-public r-dnamcrosshyb
+ ;; There aren't any releases.
+ (let ((commit "fe8acb33667e81f00dcb84e0fa75c87ab2db5d8f")
+ (revision "1"))
+ (package
+ (name "r-dnamcrosshyb")
+ (version (git-version "0.0.0.9000" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/pjhop/DNAmCrosshyb")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "12j1xsiqpvny5rp23z1az0k4cj5ajbcwkg65z00s16vywi2rx6nb"))))
+ (properties `((upstream-name . "DNAmCrosshyb")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biocgenerics
+ r-biocparallel
+ r-biostrings
+ r-bsgenome-hsapiens-ucsc-hg19-masked
+ r-bsgenome-hsapiens-ucsc-hg38-masked
+ r-dplyr
+ r-genomicranges
+ r-ggplot2
+ r-iranges
+ r-magrittr
+ r-minfi
+ r-purrr
+ r-s4vectors
+ r-shiny
+ r-stringi
+ r-stringr
+ r-tibble
+ r-tidyr
+ r-watermelon))
+ (home-page "https://github.com/pjhop/DNAmCrosshyb")
+ (synopsis "DNAmCrosshyb")
+ (description
+ "Helper functions to detect cross-hybridization on Illumina DNAm arrays")
+ (license license:gpl3))))
+
(define-public r-ruvseq
(package
(name "r-ruvseq")
--
2.41.0
next prev parent reply other threads:[~2023-11-03 13:42 UTC|newest]
Thread overview: 4+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-11-03 13:30 [bug#66914] Add r-bsgenome-hsapiens-ucsc-hg38-masked and r-dnamcrosshyb Mădălin Ionel Patrașcu
2023-11-03 13:40 ` [bug#66914] [PATCH 1/2] gnu: Add r-bsgenome-hsapiens-ucsc-hg38-masked Mădălin Ionel Patrașcu
2023-11-03 13:41 ` Mădălin Ionel Patrașcu [this message]
2023-11-04 15:29 ` bug#66914: " Ricardo Wurmus
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