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Wed, 30 Sep 2020 15:09:00 +0200 (CEST) Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS; Wed, 30 Sep 2020 15:09:00 +0200 (CEST) Received: from SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_128_GCM_SHA256) id 15.1.1979.3; Wed, 30 Sep 2020 15:08:59 +0200 Received: from SW-IT-P-EX1.mdc-berlin.net ([fe80::b00d:dcd5:bd6c:2cbe]) by SW-IT-P-EX1.mdc-berlin.net ([fe80::b00d:dcd5:bd6c:2cbe%18]) with mapi id 15.01.1979.006; Wed, 30 Sep 2020 15:08:59 +0200 From: "Hong.Li@mdc-berlin.de" To: zimoun Subject: Re: [ext] Re: failed to install the python-umap-learn package Thread-Topic: [ext] Re: failed to install the python-umap-learn package Thread-Index: AQHWkAlAHLkezWAmw0aTlJ5xth0H3ql/tEXf///rlgCAAU9K24AALS85///n0gCAAC7xTw== Date: Wed, 30 Sep 2020 13:08:59 +0000 Message-ID: References: <87r1qk65ez.fsf@gnu.org> <87wo0b3ao7.fsf@inria.fr> <4582e2f82eba477fa84352c004a0ce15@mdc-berlin.de>, In-Reply-To: Accept-Language: en-GB, de-DE, en-US Content-Language: en-GB X-MS-Has-Attach: X-MS-TNEF-Correlator: x-originating-ip: [141.80.113.52] x-tm-as-product-ver: SMEX-14.0.0.3031-8.6.1012-25696.006 x-tm-as-result: No-10--13.599800-8.000000 x-tmase-matchedrid: /77LoUQXvQ++cA2OBw2FFmg4D2QV/2zL6r3HCixfuKcc4ri4RJV/1bzY +0P/SfZ749H65z6f1B9geWyP1iSzwCwwtxRkxyN3ydRP56yRRA8eIblhH0Sn6Up12IXZajx5bgY 8Qwl4o84BMwQF2YpYAR5KkCwjNx3rYV3AYyxWIouMLRi6iZchh+BefETzWLKxcq0jCLgsBLXRLU QM5wuT+aECh539Dx3dL3tnUFFn5E4pomcF2zdDjsY5g7HnuHqyJd2n2XoSRFmsxvTCCnhvxshDL Tcwm8qo4SxeGVCEbSb7R4oM29sPjpKqfpZ4B9wPnVTWWiNp+v8tlZY1WAfRjTdlsYL2g/87aRnu wdqIKHuEKBCVL7Jm5D1FLQAWDGddN68Ooe9V0NuNCVVXBJuPJzHxTmKQiP7iqPGqHIPGZiPvdOM O+KVBCTVdkyMr6/2Fb90A1kRQDb7MvD7qnM4HTYrb5Fnj99ZJuqgVqRoQsiB9eguxhXL5MmUllG lNB+a5K15178ontUvHhGx11CDniRolSn5C7S3m9u1rQ4BgXPKbWMqVz/PiQThYqvU+Y921Ca+eM HCLPlhBQAe20/xWh5V3rtJN0B7taBevM/eurMdcVlrN0VHFa//qGgQaV241Ahn751acftuYN/UY LI7XqOLzNWBegCW2si4GpvgsYQzsOFswfBZcJIRtqopBKUBlilKxoOqtRdniyuodzZXAzHNBJ0D BE/I1qxynyEkouDg6/EVJu95U3A== x-tm-as-user-approved-sender: Yes x-tm-as-user-blocked-sender: No x-tmase-result: 10--13.599800-8.000000 x-tmase-version: SMEX-14.0.0.3031-8.6.1012-25696.006 x-tm-snts-smtp: A3367D4147E4943857E9BD1AE63E9D1B5168D0CCE0AE584CBEA543588D390B092000:F MIME-Version: 1.0 Received-SPF: pass client-ip=194.95.238.172; envelope-from=Hong.Li@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-detected-operating-system: by eggs.gnu.org: First seen = 2020/09/30 09:09:02 X-ACL-Warn: Detected OS = Linux 2.2.x-3.x [generic] [fuzzy] X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, HTML_MESSAGE=0.001, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable X-Content-Filtered-By: Mailman/MimeDel 2.1.23 X-BeenThere: help-guix@gnu.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Cc: =?iso-8859-1?Q?Ludovic_Court=E8s?= , "help-guix@gnu.org" Errors-To: help-guix-bounces+larch=yhetil.org@gnu.org Sender: "Help-Guix" X-Scanner: scn0 Authentication-Results: aspmx1.migadu.com; dkim=fail (body hash did not verify) header.d=mdc-berlin.de header.s=mdc header.b=k/cYGphM; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of help-guix-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=help-guix-bounces@gnu.org X-Spam-Score: 1.09 X-TUID: +oYwLPBDlxen Dear Simon, Now the error is coming from python-scikit-learn-0.20.4. Please find my answers and comments inline. best regards, Hong ________________________________ From: zimoun Sent: 30 September 2020 14:11 To: Li, Hong Cc: Ludovic Court=E8s; help-guix@gnu.org Subject: Re: [ext] Re: failed to install the python-umap-learn package On Wed, 30 Sep 2020 at 13:41, Hong.Li@mdc-berlin.de wrote: > $ guix time-machine --commit=3Dcd5406effa34fa5cfda7eb7bbd2ccaf5201cf523 -= - package -p guix/new/.guix-profile -i python3 python-umap-learn > Updating channel 'guix' from Git repository at 'https://git.savannah.gnu.= org/git/guix.git'... > Updating channel 'guix-bimsb' from Git repository at 'https://github.com/= BIMSBbioinfo/guix-bimsb.git'... > Updating channel 'guix-past' from Git repository at 'https://gitlab.inria= .fr/guix-hpc/guix-past'... > Updating channel 'guix-bimsb-nonfree' from Git repository at 'https://git= hub.com/BIMSBbioinfo/guix-bimsb-nonfree.git'... [...] > |builder for `/gnu/store/jvffmvaz1rm0q11c57wmsp08h0slj9ym-guix-past.drv' = failed to produce output path `/gnu/store/gg8fs00h7vqx29icijxpd7w99z1p8lmf-= guix-past' > build of /gnu/store/jvffmvaz1rm0q11c57wmsp08h0slj9ym-guix-past.drv failed The error comes from the channel 'guix-past'. Well, I will investigate lat= er... Therefore, you have to turn off this channel. The simplest is to run: echo "%default-channels" > /tmp/chan.scm guix time-machine --commit=3Dcd5406effa34fa5cfda7eb7bbd2ccaf5201cf523 \ -C /tmp/chan.scm \ -- package -p guix/new/.guix-profile -i python3 python-umap-learn Hope that helps. [hli@max-login3.mdc-berlin.net:~] $ guix time-machine --commit=3Dcd5406effa= 34fa5cfda7eb7bbd2ccaf5201cf523 -C /tmp/chan.scm -- package -p guix/new/.gu= ix-profile -i python-umap-learn Updating channel 'guix' from Git repository at 'https://git.savannah.gnu.or= g/git/guix.git'... guile: warning: failed to install locale guix package: warning: Consider running 'guix pull' followed by 'guix package -u' to get up-to-date packages and security updates. updating substitutes from 'https://ci.guix.gnu.org'... 100.0% The following package will be installed: python-umap-learn 0.3.10 /gnu/store/yg68y32h1fhngn8mqpfyc8lzfg25df48= -python-umap-learn-0.3.10 substitute: updating substitutes from 'https://ci.guix.gnu.org'... 100.0% building /gnu/store/fzcysynrdkz52f077c4hbrdmpwkb01nx-python-numba-0.46.0.dr= v... updating substitutes from 'https://ci.guix.gnu.org'... 100.0% building /gnu/store/vxf3qwhkahgzfhwp6c63vm8vky9fj5bl-python-scikit-learn-0.= 20.4.drv... 100% 'check' [#############################################################= ###########################################################################= #######################################################]builder for `/gnu/s= tore/vxf3qwhkahgzfhwp6c63vm8vky9fj5bl-python-scikit-learn-0.20.4.drv' faile= d with exit code 1 build of /gnu/store/vxf3qwhkahgzfhwp6c63vm8vky9fj5bl-python-scikit-learn-0.= 20.4.drv failed View build log at '/gnu/var/log/guix/drvs/vx/f3qwhkahgzfhwp6c63vm8vky9fj5bl= -python-scikit-learn-0.20.4.drv'. guix package: error: build of `/gnu/store/vxf3qwhkahgzfhwp6c63vm8vky9fj5bl-= python-scikit-learn-0.20.4.drv' failed > [hli@max-login3.mdc-berlin.net:~] $ guix time-machine --commit=3Dcac674d9= 9dc4a332e6210c57ec7f1b8164f66642 -- package -p guix/new/.guix-profile -i py= thon3 python-umap-learn Why this commit? 'python-umap-learn' should be broken This commit is the most recent succeeded build from 2020-04-18 19:24:20, yo= u also suggested this commit before. > Updating channel 'guix' from Git repository at 'https://git.savannah.gnu.= org/git/guix.git'... > Updating channel 'guix-bimsb' from Git repository at 'https://github.com/= BIMSBbioinfo/guix-bimsb.git'... > Updating channel 'guix-past' from Git repository at 'https://gitlab.inria= .fr/guix-hpc/guix-past'... > Updating channel 'guix-bimsb-nonfree' from Git repository at 'https://git= hub.com/BIMSBbioinfo/guix-bimsb-nonfree.git'... > Computing Guix derivation for 'x86_64-linux'... WARNING: (guix build ema= cs-build-system): imported module (guix build utils) overrides core binding= `delete' | > The following derivation will be built: > /gnu/store/zz2557r32hsq2ksa53ix4ygaskkrs2qi-profile.drv > The following profile hook will be built: > /gnu/store/yaj4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.drv > building package cache... > /builder for `/gnu/store/yaj4m68r6l9jhdb767psz79fm84hb6x6-guix-package-ca= che.drv' failed to produce output path `/gnu/store/9vpcvp00acz4lvglfs1k69a4= i05p5hbw-guix-package-cache' > build of /gnu/store/yaj4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.d= rv failed > View build log at '/gnu/var/log/guix/drvs/ya/j4m68r6l9jhdb767psz79fm84hb6= x6-guix-package-cache.drv'. > cannot build derivation `/gnu/store/zz2557r32hsq2ksa53ix4ygaskkrs2qi-prof= ile.drv': 1 dependencies couldn't be built I do not know why it returns an error here. What happens if you run: guix time-machine --commit=3Dcac674d99dc4a332e6210c57ec7f1b8164f66642 -- = help ? [hli@max-login3.mdc-berlin.net:~] $ guix time-machine --commit=3Dcac674d99d= c4a332e6210c57ec7f1b8164f66642 -- help Updating channel 'guix' from Git repository at 'https://git.savannah.gnu.or= g/git/guix.git'... Updating channel 'guix-bimsb' from Git repository at 'https://github.com/BI= MSBbioinfo/guix-bimsb.git'... Updating channel 'guix-past' from Git repository at 'https://gitlab.inria.f= r/guix-hpc/guix-past'... Updating channel 'guix-bimsb-nonfree' from Git repository at 'https://githu= b.com/BIMSBbioinfo/guix-bimsb-nonfree.git'... WARNING: (guix build emacs-build-system): imported module (guix build utils= ) overrides core binding `delete' Computing Guix derivation for 'x86_64-linux'... \ The following derivation will be built: /gnu/store/zz2557r32hsq2ksa53ix4ygaskkrs2qi-profile.drv The following profile hook will be built: /gnu/store/yaj4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.drv building package cache... /builder for `/gnu/store/yaj4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cach= e.drv' failed to produce output path `/gnu/store/9vpcvp00acz4lvglfs1k69a4i0= 5p5hbw-guix-package-cache' build of /gnu/store/yaj4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.drv= failed View build log at '/gnu/var/log/guix/drvs/ya/j4m68r6l9jhdb767psz79fm84hb6x6= -guix-package-cache.drv'. cannot build derivation `/gnu/store/zz2557r32hsq2ksa53ix4ygaskkrs2qi-profil= e.drv': 1 dependencies couldn't be built guix time-machine: error: build of `/gnu/store/zz2557r32hsq2ksa53ix4ygaskkr= s2qi-profile.drv' failed All the best, simon