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Wed, 30 Sep 2020 22:47:10 +0200 (CEST) Received: from SW-IT-P-EX1.mdc-berlin.net (mgw1.mdc-berlin.de [141.80.113.54]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS; Wed, 30 Sep 2020 22:47:10 +0200 (CEST) Received: from SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) by SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_128_GCM_SHA256) id 15.1.1979.3; Wed, 30 Sep 2020 22:47:09 +0200 Received: from SW-IT-P-EX1.mdc-berlin.net ([fe80::b00d:dcd5:bd6c:2cbe]) by SW-IT-P-EX1.mdc-berlin.net ([fe80::b00d:dcd5:bd6c:2cbe%18]) with mapi id 15.01.1979.006; Wed, 30 Sep 2020 22:47:06 +0200 From: "Hong.Li@mdc-berlin.de" To: zimoun Subject: Re: [ext] Re: failed to install the python-umap-learn package Thread-Topic: [ext] Re: failed to install the python-umap-learn package Thread-Index: AQHWkAlAHLkezWAmw0aTlJ5xth0H3ql/tEXf///rlgCAAU9K24AALS85///n0gCAAC7xT///7aiAABJX3B4= Date: Wed, 30 Sep 2020 20:47:06 +0000 Message-ID: References: <87r1qk65ez.fsf@gnu.org> <87wo0b3ao7.fsf@inria.fr> <4582e2f82eba477fa84352c004a0ce15@mdc-berlin.de> , In-Reply-To: Accept-Language: en-GB, de-DE, en-US Content-Language: en-GB X-MS-Has-Attach: X-MS-TNEF-Correlator: x-originating-ip: [141.80.113.52] x-tm-as-product-ver: SMEX-14.0.0.3031-8.6.1012-25698.002 x-tm-as-result: No-10--10.931300-8.000000 x-tmase-matchedrid: dL10VBB8yoe+cA2OBw2FFmg4D2QV/2zL6r3HCixfuKcc4ri4RJV/1bzY +0P/SfZ749H65z6f1B9geWyP1iSzwCwwtxRkxyN3ydRP56yRRA8eIblhH0Sn6Up12IXZajx5bgY 8Qwl4o84BMwQF2YpYASwRUIh8eUGDFV1OP20zjjH805SSvoAPN1G//EzLYUavctDr7iGkSelcjD zDInVOwt9LK56sfoMILiDM12KQU7YfDoeD0kwnRS+PrAd8gbHJ0HrzChKWs8sM74Nf6tTB9mGft P5z/8TGD/zIqLJmZ+QfWekSZjAGEYlL8gBSDPjtmvnKSb020hyiIpNv3rjMdR3RY4pGTCyHBl4C fsA0TRpSi6MnGZrgmaW6CtebkgpwFNFt97B+kF6mAgeB6dclcp03C0fPk8xK8DnqkZbEZZjgj+2 Bh6fb5Um+F5dSIclqcBVUy72Ls5SOfWe1kBxVgAPZZctd3P4BcuFRT+prg4ZCNbvgrCxK9Gd8NQ w82eCfTXq49q0g/7UAbI0+HOcTP43snRxZwOJ5rMcMK3Nm8dn/6hoEGlduNQIZ++dWnH7bmDf1G CyO16ji8zVgXoAltrIuBqb4LGEM7DhbMHwWXCSEbaqKQSlAZXJ13h9cj95JDGJ+PPvNgZXV4LA0 Y9Iyr4Oh0S55u/Hxz/3NrTLUMeU= x-tm-as-user-approved-sender: Yes x-tm-as-user-blocked-sender: No x-tmase-result: 10--10.931300-8.000000 x-tmase-version: SMEX-14.0.0.3031-8.6.1012-25698.002 x-tm-snts-smtp: D757E35326E1416BE47B40D5C5A9B8EDEA2A20D54F8822F9DA9014D6325EFE042000:F MIME-Version: 1.0 Received-SPF: pass client-ip=194.95.238.172; envelope-from=Hong.Li@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-detected-operating-system: by eggs.gnu.org: First seen = 2020/09/30 16:47:11 X-ACL-Warn: Detected OS = Linux 2.2.x-3.x [generic] [fuzzy] X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, HTML_MESSAGE=0.001, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable X-Content-Filtered-By: Mailman/MimeDel 2.1.23 X-BeenThere: help-guix@gnu.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Cc: =?iso-8859-1?Q?Ludovic_Court=E8s?= , "help-guix@gnu.org" Errors-To: help-guix-bounces+larch=yhetil.org@gnu.org Sender: "Help-Guix" X-Scanner: scn0 Authentication-Results: aspmx1.migadu.com; dkim=fail (body hash did not verify) header.d=mdc-berlin.de header.s=mdc header.b=QRnrQKo5; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of help-guix-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=help-guix-bounces@gnu.org X-Spam-Score: 1.09 X-TUID: zWErP9jiI5/F Dear Simon, Thank you so much, the build was successful using: guix time-machine --commit=3Dcac674d99dc4a332e6210c57ec7f1b8164f66642 \ -C /tmp/chan.scm \ -- package -p .guix-profile -i python-umap-learn best regards, Hong ________________________________ From: zimoun Sent: 30 September 2020 15:54 To: Li, Hong Cc: Ludovic Court=E8s; help-guix@gnu.org Subject: Re: [ext] Re: failed to install the python-umap-learn package Dear, Please run: echo "%default-channels" > /tmp/chan.scm guix time-machine --commit=3Dcac674d99dc4a332e6210c57ec7f1b8164f66642 \ -C /tmp/chan.scm \ -- package -i pyhton-umap-learn This will fix your initial issue, I guess. Exactly, this works in the end. > [hli@max-login3.mdc-berlin.net:~] $ guix time-machine --commit=3Dcd5406ef= fa34fa5cfda7eb7bbd2ccaf5201cf523 -C /tmp/chan.scm -- package -p guix/new/.= guix-profile -i python-umap-learn I have not checked in your previous email, but it is the wrong commit. I tried all succeeded commits, and this commit is the first succeeded one f= rom 2020-01-07 03:09:35 https://data.guix.gnu.org/repository/1/branch/master/package/python-umap-le= arn/output-history > build of /gnu/store/vxf3qwhkahgzfhwp6c63vm8vky9fj5bl-python-scikit-learn-= 0.20.4.drv failed > View build log at '/gnu/var/log/guix/drvs/vx/f3qwhkahgzfhwp6c63vm8vky9fj5= bl-python-scikit-learn-0.20.4.drv'. > guix package: error: build of `/gnu/store/vxf3qwhkahgzfhwp6c63vm8vky9fj5b= l-python-scikit-learn-0.20.4.drv' failed It could be expected since the package 'python-scikit-learn' is broken: https://data.guix.gnu.org/repository/1/branch/master/package/python-scikit-= learn/output-history especially for the commit you are trying (which is not the one you need for the working 'python-umap-learn' package). > Why this commit? 'python-umap-learn' should be broken > > This commit is the most recent succeeded build from 2020-04-18 19:24:20, = you also suggested this commit before. Ah yeah but then what was the previous commit cd5406effa34fa5cfda7eb7bbd2ccaf5201cf523? :-) > [hli@max-login3.mdc-berlin.net:~] $ guix time-machine --commit=3Dcac674d9= 9dc4a332e6210c57ec7f1b8164f66642 -- help > Updating channel 'guix' from Git repository at 'https://git.savannah.gnu.= org/git/guix.git'... > Updating channel 'guix-bimsb' from Git repository at 'https://github.com/= BIMSBbioinfo/guix-bimsb.git'... > Updating channel 'guix-past' from Git repository at 'https://gitlab.inria= .fr/guix-hpc/guix-past'... > Updating channel 'guix-bimsb-nonfree' from Git repository at 'https://git= hub.com/BIMSBbioinfo/guix-bimsb-nonfree.git'... [...] > /builder for `/gnu/store/yaj4m68r6l9jhdb767psz79fm84hb6x6-guix-package-ca= che.drv' failed to produce output path `/gnu/store/9vpcvp00acz4lvglfs1k69a4= i05p5hbw-guix-package-cache' > build of /gnu/store/yaj4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.d= rv failed > View build log at '/gnu/var/log/guix/drvs/ya/j4m68r6l9jhdb767psz79fm84hb6= x6-guix-package-cache.drv'. > cannot build derivation `/gnu/store/zz2557r32hsq2ksa53ix4ygaskkrs2qi-prof= ile.drv': 1 dependencies couldn't be built > guix time-machine: error: build of `/gnu/store/zz2557r32hsq2ksa53ix4ygask= krs2qi-profile.drv' failed This comes from the extra 3 channels you added. If you remove them (see above), then it should work, I guess. Hope that helps, simon