Guix pull issue

Guix pull issue

[vikram sai balaji ulaganathan]

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For a few weeks now, I have been trying to get guix pull to update
everything but get the below error. Guix is at .15.0
Any help is appreciated
[35/39] Compiling './guix/serialization.scm'...
[36/39] Compiling './guix/sets.scm'...
[37/39] Compiling './guix/store.scm'...
[38/39] Compiling './guix/ui.scm'...
;;; Failed to autoload make-session in (gnutls):
;;; missing interface for module (gnutls)
;;; Failed to autoload connection-end/client in (gnutls):
;;; missing interface for module (gnutls)
;;; gnu/packages.scm:92:33: warning: non-literal format string
;;; gnu/packages.scm:108:16: warning: non-literal format string
;;; Failed to autoload make-session in (gnutls):
;;; missing interface for module (gnutls)
;;; Failed to autoload connection-end/client in (gnutls):
;;; missing interface for module (gnutls)
;;; Failed to autoload make-session in (gnutls):
;;; missing interface for module (gnutls)
;;; Failed to autoload make-session in (gnutls):
;;; missing interface for module (gnutls)
;;; Failed to autoload connection-end/client in (gnutls):
;;; missing interface for module (gnutls)
;;; guix/build/download.scm:176:4: warning: possibly unbound variable
`set-certificate-credentials-x509-trust-data!'
;;; guix/build/download.scm:182:15: warning: possibly unbound variable
`make-certificate-credentials'
;;; guix/build/download.scm:191:20: warning: possibly unbound variable
`x509-certificate-format/pem'
;;; guix/build/download.scm:199:2: warning: possibly unbound variable
`session-peer-certificate-chain'
;;; guix/build/download.scm:201:5: warning: possibly unbound variable
`import-x509-certificate'
;;; guix/build/download.scm:201:5: warning: possibly unbound variable
`x509-certificate-format/der'
;;; guix/build/download.scm:210:10: warning: possibly unbound variable
`x509-certificate-matches-hostname?'
;;; guix/build/download.scm:215:2: warning: possibly unbound variable
`peer-certificate-status'
;;; guix/build/download.scm:234:13: warning: possibly unbound variable
`certificate-status->string'
;;; guix/build/download.scm:229:20: warning: possibly unbound variable
`x509-certificate-dn'
;;; guix/build/download.scm:246:18: warning: possibly unbound variable
`make-session'
;;; guix/build/download.scm:246:18: warning: possibly unbound variable
`connection-end/client'
;;; guix/build/download.scm:255:8: warning: possibly unbound variable
`set-session-server-name!'
;;; guix/build/download.scm:255:8: warning: possibly unbound variable
`server-name-type/dns'
;;; guix/build/download.scm:259:4: warning: possibly unbound variable
`set-session-transport-fd!'
;;; guix/build/download.scm:260:4: warning: possibly unbound variable
`set-session-default-priority!'
;;; guix/build/download.scm:266:4: warning: possibly unbound variable
`set-session-priorities!'
;;; guix/build/download.scm:268:4: warning: possibly unbound variable
`set-session-credentials!'
;;; guix/build/download.scm:272:34: warning: possibly unbound variable
`make-certificate-credentials'
;;; guix/build/download.scm:280:8: warning: possibly unbound variable
`handshake'
;;; guix/build/download.scm:282:15: warning: possibly unbound variable
`error/warning-alert-received'
;;; guix/build/download.scm:287:23: warning: possibly unbound variable
`alert-description->string'
;;; guix/build/downoad.scm:287:50: warning: possibly unbound variable
`alert-get'
;;; guix/build/download.scm:288:15: warning: possibly unbound variable
`handshake'
;;; guix/build/download.scm:303:18: warning: possibly unbound variable
`session-record-port'
;;; Failed to autoload make-session in (gnutls):
;;; missing interface for module (gnutls)
;;; Failed to autoload make-session in (gnutls):
;;; missing interface for module (gnutls)
;;; Failed to autoload connection-end/client in (gnutls):
;;; missing interface for module (gnutls)
;;; guix/discovery.scm:89:22: warning: non-literal format string
;;; guix/ui.scm:171:5: warning: non-literal format string
;;; guix/ui.scm:316:2: warning: non-literal format string
;;; guix/ui.scm:334:22: warning: non-literal format string
;;; guix/ui.scm:362:13: warning: non-literal format string
;;; guix/ui.scm:355:7: warning: non-literal f
/Backtrace:
In guix/store.scm:
  1451:38 19 (_ #<build-daemon 256.97 14b2fa0>)
  1040:10 18 (add-file-tree-to-store #<build-daemon 256.97 14b2fa0> # …)
In guix/serialization.scm:
    364:9 17 (dump "guix-packages-base-source")
In srfi/srfi-1.scm:
    640:9 16 (for-each #<procedure 65cda20 at guix/serialization.sc…> …)
In guix/serialization.scm:
   371:23 15 (_ "gnu")
    364:9 14 (dump "guix-packages-base-source/gnu")
In srfi/srfi-1.scm:
    640:9 13 (for-each #<procedure 65cd9f0 at guix/serialization.sc…> …)
In guix/serialization.scm:
   371:23 12 (_ "packages")
    364:9 11 (dump "guix-packages-base-source/gnu/packages")
In srfi/srfi-1.scm:
    640:9 10 (for-each #<procedure 65cd9c0 at guix/serialization.sc…> …)
In guix/serialization.scm:
   371:23  9 (_ "bootstrap")
    364:9  8 (dump "guix-packages-base-source/gnu/packages/bootstrap")
In srfi/srfi-1.scm:
    640:9  7 (for-each #<procedure 65cd8d0 at guix/serialization.sc…> …)
In guix/serialization.scm:
   371:23  6 (_ "armhf-linux")
    364:9  5 (dump "guix-packages-base-source/gnu/packages/bootstrap…")
In srfi/srfi-1.scm:
    640:9  4 (for-each #<procedure 65cd870 at guix/serialization.sc…> …)
In guix/serialization.scm:
   371:23  3 (_ "bash")
   357:13  2 (dump _)
    225:6  1 (write-contents-from-port #<input: gnu/packages/bootst…> …)
In unknown file:
           0 (sendfile #<input-output: file 10> #<input: gnu/packag…> …)

ERROR: In procedure sendfile:
In procedure sendfile: Input/output error
Backtrace:
           9 (primitive-load "/root/.config/guix/current/bin/guix")
In guix/ui.scm:
  1579:12  8 (run-guix-command _ . _)
In ice-9/boot-9.scm:
    829:9  7 (catch _ _ #<procedure 7fd0184879b8 at guix/ui.scm:611…> …)
    829:9  6 (catch _ _ #<procedure 7fd0184879d0 at guix/ui.scm:729…> …)
    829:9  5 (catch _ _ #<procedure 7fd0150f03d0 at guix/scripts/pu…> …)
In guix/scripts/pull.scm:
   505:22  4 (_)
In guix/store.scm:
  1555:24  3 (run-with-store _ _ #:guile-for-build _ #:system _ # _)
In guix/scripts/pull.scm:
    264:2  2 (_ _)
In ice-9/eval.scm:
   191:27  1 (_ #(#(#<directory (build-self) 4c82e60> #<procedu…>) …))
Thanks
Vikram

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Re: Guix pull issue

[Ludovic Courtès]

Hello,

vikram sai balaji ulaganathan <tayirvadai.vikram@gmail.com> skribis:

> For a few weeks now, I have been trying to get guix pull to update
> everything but get the below error. Guix is at .15.0

What does “uname -srvm” return on this machine?

> In guix/serialization.scm:
>    371:23  3 (_ "bash")
>    357:13  2 (dump _)
>     225:6  1 (write-contents-from-port #<input: gnu/packages/bootst…> …)
> In unknown file:
>            0 (sendfile #<input-output: file 10> #<input: gnu/packag…> …)
>
> ERROR: In procedure sendfile:
> In procedure sendfile: Input/output error

Guix internally relies on the sendfile(2) system call to efficiently
communicate with the build daemon.  Here, it could be that the storage
device where those files are is dysfunctional, or that the file system
is corrupt, or that something is wrong with the kernel.

Does “dmesg | tail” show any useful hint when invoked right after the
error?

Thanks,
Ludo’.

Re: Guix pull issue

[vikram sai balaji ulaganathan]

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Thanks, I'll run the command and let you know.

On Sat, Sep 1, 2018, 10:57 AM Ludovic Courtès <ludo@gnu.org> wrote:

> Hello,
>
> vikram sai balaji ulaganathan <tayirvadai.vikram@gmail.com> skribis:
>
> > For a few weeks now, I have been trying to get guix pull to update
> > everything but get the below error. Guix is at .15.0
>
> What does “uname -srvm” return on this machine?
>
> > In guix/serialization.scm:
> >    371:23  3 (_ "bash")
> >    357:13  2 (dump _)
> >     225:6  1 (write-contents-from-port #<input: gnu/packages/bootst…> …)
> > In unknown file:
> >            0 (sendfile #<input-output: file 10> #<input: gnu/packag…> …)
> >
> > ERROR: In procedure sendfile:
> > In procedure sendfile: Input/output error
>
> Guix internally relies on the sendfile(2) system call to efficiently
> communicate with the build daemon.  Here, it could be that the storage
> device where those files are is dysfunctional, or that the file system
> is corrupt, or that something is wrong with the kernel.
>
> Does “dmesg | tail” show any useful hint when invoked right after the
> error?
>
> Thanks,
> Ludo’.
>

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Re: Guix pull issue

[vikram sai balaji ulaganathan]

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Uname shows Linux 4.17.13-gnu #1 SMP 1x86_64

dmesg is not revealing anything. dmesg is not updating for this operation
Is there another command that needs to be run or do I have restart guix
daemon.

Thanks
Vikram

On Sat, Sep 1, 2018, 10:57 AM Ludovic Courtès <ludo@gnu.org> wrote:

> Hello,
>
> vikram sai balaji ulaganathan <tayirvadai.vikram@gmail.com> skribis:
>
> > For a few weeks now, I have been trying to get guix pull to update
> > everything but get the below error. Guix is at .15.0
>
> What does “uname -srvm” return on this machine?
>
> > In guix/serialization.scm:
> >    371:23  3 (_ "bash")
> >    357:13  2 (dump _)
> >     225:6  1 (write-contents-from-port #<input: gnu/packages/bootst…> …)
> > In unknown file:
> >            0 (sendfile #<input-output: file 10> #<input: gnu/packag…> …)
> >
> > ERROR: In procedure sendfile:
> > In procedure sendfile: Input/output error
>
> Guix internally relies on the sendfile(2) system call to efficiently
> communicate with the build daemon.  Here, it could be that the storage
> device where those files are is dysfunctional, or that the file system
> is corrupt, or that something is wrong with the kernel.
>
> Does “dmesg | tail” show any useful hint when invoked right after the
> error?
>
> Thanks,
> Ludo’.
>

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Re: Guix pull issue

[vikram sai balaji ulaganathan]

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Turned verbosity of daemon to 5 and I got the below

downgrading to read lock on `/var/guix/temproots/1572'
locking path
`/gnu/store/bp0hyahbn3f60b954rfcz0vqlmc7lhzj-bzip2-1.0.6.tar.gz.drv'
lock acquired on
`/gnu/store/bp0hyahbn3f60b954rfcz0vqlmc7lhzj-bzip2-1.0.6.tar.gz.drv.lock'
recursively deleting path
`/gnu/store/bp0hyahbn3f60b954rfcz0vqlmc7lhzj-bzip2-1.0.6.tar.gz.drv'
|   /gnu/store/bp0hyahbn3f60b954rfcz0vqlmc7lhzj-bzip2-1.0.6.tar.gz.drv
`/gnu/store/bp0hyahbn3f60b954rfcz0vqlmc7lhzj-bzip2-1.0.6.tar.gz.drv' has
hash
`d9ddde832ca6671a86815f293a4d175cf8abad16146670c6d8030bf1edcd5e85'
linking
‘/gnu/store/bp0hyahbn3f60b954rfcz0vqlmc7lhzj-bzip2-1.0.6.tar.gz.drv’ to
‘/gnu/store/.links/11ayrpnz22q3v3370rhl2snspy2w2x6klaazh631lrx65j1xxpfr’
lock released on
`/gnu/store/bp0hyahbn3f60b954rfcz0vqlmc7lhzj-bzip2-1.0.6.tar.gz.drv.lock'
Backtrace:
          19 (_ #<procedure thunk ()> #<procedure list _> #<undefined>)
In guix/packages.scm:
  1205:22 18 (thunk)
  1138:25 17 (bag->derivation #<build-daemon 256.97 1826f50> #<<bag…> …)
In srfi/srfi-1.scm:
   592:29 16 (map1 (("source" #<origin "mirror://gnu/guile/guil…>) …))
   592:17 15 (map1 (("pkgconfig" #<package pkg-config@0.29.2 gn…>) …))
In guix/packages.scm:
   926:16 14 (expand-input #<build-daemon 256.97 1826f50> #<package…> …)
   881:14 13 (cache! #<weak-table 255/443> #<package pkg-config@0.2…> …)
In unknown file:
          12 (_ #<procedure thunk ()> #<procedure list _> #<undefined>)
In guix/packages.scm:
  1205:22 11 (thunk)
  1138:25 10 (bag->derivation #<build-daemon 256.97 1826f50> #<<bag…> …)
In srfi/srfi-1.scm:
   592:29  9 (map1 (("source" #<origin ("http://fossies.org/lin…>) …))
   592:29  8 (map1 (("tar" #<package tar@1.30 gnu/packages/boot…>) …))
   592:29  7 (map1 (("gzip" #<package gzip@1.9 gnu/packages/boo…>) …))
   592:17  6 (map1 (("bzip2" #<package bzip2@1.0.6 gnu/packages…>) …))
In guix/packages.scm:
   926:16  5 (expand-input #<build-daemon 256.97 1826f50> #<package…> …)
   881:14  4 (cache! #<weak-table 255/443> #<package bzip2@1.0.6 gn…> …)
In unknown file:
           3 (_ #<procedure thunk ()> #<procedure list _> #<undefined>)
In guix/packages.scm:
  1205:22  2 (thunk)
  1138:25  1 (bag->derivation #<build-daemon 256.97 1826f50> #<<bag…> …)
In srfi/srfi-1.scm:
   592:17  0 (map1 (("source" #<origin "https://web.archive.org…>) …))

srfi/srfi-1.scm:592:17: In procedure map1:
Throw to key `srfi-34' with args `(#<condition &nix-protocol-error
[message: "error parsing derivation
`/gnu/store/bp0hyahbn3f60b954rfcz0vqlmc7lhzj-bzip2-1.0.6.tar.gz.drv':
expected string `Derive(['"
status: 1] 7e7f300>)'.
Backtrace:
           9 (primitive-load "/root/.config/guix/current/bin/guix")
In guix/ui.scm:
  1579:12  8 (run-guix-command _ . _)
In ice-9/boot-9.scm:
    829:9  7 (catch _ _ #<procedure 7f0f8aa7e9b8 at guix/ui.scm:611…> …)
    829:9  6 (catch _ _ #<procedure 7f0f8aa7e9d0 at guix/ui.scm:729…> …)
    829:9  5 (catch _ _ #<procedure 7f0f876e73d0 at guix/scripts/pu…> …)
In guix/scripts/pull.scm:
   505:22  4 (_)
In guix/store.scm:
  1555:24  3 (run-with-store _ _ #:guile-for-build _ #:system _ # _)
In guix/scripts/pull.scm:
    264:2  2 (_ _)
In ice-9/eval.scm:
   191:27  1 (_ #(#(#<directory (build-self) 4a8c640> #<procedu…>) …))
In unknown file:
           0 (scm-error misc-error #f "~A ~S" ("invalid build re…" …) …)

ERROR: In procedure scm-error:
invalid build result (#<derivation
/gnu/store/c8sw72swmyhy0b25hgbz3b3pjvv73vd6-compute-guix-derivation.drv =>
/gnu/store/5ijqxijd3qgrfwgzncx9jcq9ivqlgkgm-compute-guix-derivation
49b5690> "")

Thanks. Any help would be appreciated.
Vikram

On Mon, Sep 3, 2018, 8:01 PM vikram sai balaji ulaganathan <
tayirvadai.vikram@gmail.com> wrote:

> Uname shows Linux 4.17.13-gnu #1 SMP 1x86_64
>
> dmesg is not revealing anything. dmesg is not updating for this operation
> Is there another command that needs to be run or do I have restart guix
> daemon.
>
> Thanks
> Vikram
>
> On Sat, Sep 1, 2018, 10:57 AM Ludovic Courtès <ludo@gnu.org> wrote:
>
>> Hello,
>>
>> vikram sai balaji ulaganathan <tayirvadai.vikram@gmail.com> skribis:
>>
>> > For a few weeks now, I have been trying to get guix pull to update
>> > everything but get the below error. Guix is at .15.0
>>
>> What does “uname -srvm” return on this machine?
>>
>> > In guix/serialization.scm:
>> >    371:23  3 (_ "bash")
>> >    357:13  2 (dump _)
>> >     225:6  1 (write-contents-from-port #<input: gnu/packages/bootst…> …)
>> > In unknown file:
>> >            0 (sendfile #<input-output: file 10> #<input: gnu/packag…> …)
>> >
>> > ERROR: In procedure sendfile:
>> > In procedure sendfile: Input/output error
>>
>> Guix internally relies on the sendfile(2) system call to efficiently
>> communicate with the build daemon.  Here, it could be that the storage
>> device where those files are is dysfunctional, or that the file system
>> is corrupt, or that something is wrong with the kernel.
>>
>> Does “dmesg | tail” show any useful hint when invoked right after the
>> error?
>>
>> Thanks,
>> Ludo’.
>>
>

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Re: Guix pull issue

[Ricardo Wurmus]

Hi,

vikram sai balaji ulaganathan <tayirvadai.vikram@gmail.com> writes:

> srfi/srfi-1.scm:592:17: In procedure map1:
> Throw to key `srfi-34' with args `(#<condition &nix-protocol-error
> [message: "error parsing derivation
> `/gnu/store/bp0hyahbn3f60b954rfcz0vqlmc7lhzj-bzip2-1.0.6.tar.gz.drv':
> expected string `Derive(['"

What are the contents of this derivation file?

Mine looks like this:

--8<---------------cut here---------------start------------->8---
Derive([("out","/gnu/store/bjpalrv9f49d2k40p7ga0y6dwdys9w5j-bzip2-1.0.6.tar.gz","sha256","a2848f34fcd5d6cf47def00461fcb528a0484d8edef8208d6d2e2909dc61d9cd")],[],["/gnu/store/45895gr0x2ajy61y7v18jikwgsv8arh7-mirrors","/gnu/store/wvbspgpk15aq6kcf2f67xjai1fbkbyqc-content-addressed-mirrors"],"x86_64-linux","builtin:download",[],[("content-addressed-mirrors","/gnu/store/wvbspgpk15aq6kcf2f67xjai1fbkbyqc-content-addressed-mirrors"),("impureEnvVars","http_proxy https_proxy LC_ALL LC_MESSAGES LANG COLUMNS"),("mirrors","/gnu/store/45895gr0x2ajy61y7v18jikwgsv8arh7-mirrors"),("out","/gnu/store/bjpalrv9f49d2k40p7ga0y6dwdys9w5j-bzip2-1.0.6.tar.gz"),("preferLocalBuild","1"),("url","\"https://web.archive.org/web/20180624184806/http://www.bzip.org/1.0.6/bzip2-1.0.6.tar.gz\"")])
--8<---------------cut here---------------end--------------->8---

Could it be that it is an empty file?  If that the case your file system
may be corrupt.

--
Ricardo