Help: ModuleNotFoundError for toml in building python-jupytext-1.15.0.drv

Help: ModuleNotFoundError for toml in building python-jupytext-1.15.0.drv

[Mbk Kamble]

Hi.
    I have tried to update my GuixSystem installation over the past week
and system reconfigure is failing to build some derivations. The latest is
this error:
build of
/gnu/store/5x701598l7qy5j5shfvhh0xjycn0q868-python-jupytext-1.15.0.drv
failed

when I looked in the log file, it shows that check phase is failing with
the error message:
ModuleNotFoundError: No module named 'toml'

I've been using guix for a couple of years, so doing a "guix system
reconfigure" after "guix pull" is not new to me. But I have never
experienced a prolonged "system reconfigure" fail before, so I am not sure
what I am missing.

This is my current working version info:
Generation 24   Nov 18 2024 21:53:10    (current)
  file name: /var/guix/profiles/system-24-link
  canonical file name: /gnu/store/yn9lr41l2igyccq5g0iphylgq9qgw7h6-system
  label: GNU with Linux 6.10.14
  bootloader: grub-efi
  root device: UUID: ec6f0ca7-ffa6-4dff-81a0-bd200f46ee54
  kernel: /gnu/store/x6zbnrdd8j0ilf07vgxjdgj3h6dlw0dx-linux-6.10.14/bzImage
  channels:
    nonguix:
      repository URL: https://gitlab.com/nonguix/nonguix
      branch: master
      commit: ad966c3844385e8f7b60b0dc915f92a1eba47e09
    guix:
      repository URL: https://git.savannah.gnu.org/git/guix.git
      branch: master
      commit: 59b2a60d0041882d732e1766e28f0df5a1ef1ac1
  configuration file:
/gnu/store/d15mv0462989b40mvljzvgw2d05ccg5x-configuration.scm

Any help would be appreciated.

-Milind

Re: Help: ModuleNotFoundError for toml in building python-jupytext-1.15.0.drv

[Efraim Flashner]

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On Sun, Dec 15, 2024 at 07:01:24PM -0600, Mbk Kamble wrote:
> Hi.
>     I have tried to update my GuixSystem installation over the past week
> and system reconfigure is failing to build some derivations. The latest is
> this error:
> build of
> /gnu/store/5x701598l7qy5j5shfvhh0xjycn0q868-python-jupytext-1.15.0.drv
> failed
> 
> when I looked in the log file, it shows that check phase is failing with
> the error message:
> ModuleNotFoundError: No module named 'toml'
> 
> I've been using guix for a couple of years, so doing a "guix system
> reconfigure" after "guix pull" is not new to me. But I have never
> experienced a prolonged "system reconfigure" fail before, so I am not sure
> what I am missing.
> 
> This is my current working version info:
> Generation 24   Nov 18 2024 21:53:10    (current)
>   file name: /var/guix/profiles/system-24-link
>   canonical file name: /gnu/store/yn9lr41l2igyccq5g0iphylgq9qgw7h6-system
>   label: GNU with Linux 6.10.14
>   bootloader: grub-efi
>   root device: UUID: ec6f0ca7-ffa6-4dff-81a0-bd200f46ee54
>   kernel: /gnu/store/x6zbnrdd8j0ilf07vgxjdgj3h6dlw0dx-linux-6.10.14/bzImage
>   channels:
>     nonguix:
>       repository URL: https://gitlab.com/nonguix/nonguix
>       branch: master
>       commit: ad966c3844385e8f7b60b0dc915f92a1eba47e09
>     guix:
>       repository URL: https://git.savannah.gnu.org/git/guix.git
>       branch: master
>       commit: 59b2a60d0041882d732e1766e28f0df5a1ef1ac1
>   configuration file:
> /gnu/store/d15mv0462989b40mvljzvgw2d05ccg5x-configuration.scm
> 
> Any help would be appreciated.

It looks like it was some fallout from the python-team merge.
python-jupytext was fixed within the past day or 2, so I'm going to
suggest running 'guix pull' again and then trying again.

-- 
Efraim Flashner   <efraim@flashner.co.il>   אפרים פלשנר
GPG key = A28B F40C 3E55 1372 662D  14F7 41AA E7DC CA3D 8351
Confidentiality cannot be guaranteed on emails sent or received unencrypted

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Re: Help: ModuleNotFoundError for toml in building python-jupytext-1.15.0.drv

[Mbk Kamble]

Thanks for the tip, Efraim. The system reconfiguration worked after another
pull.

On Mon, Dec 16, 2024 at 3:50 AM Efraim Flashner <efraim@flashner.co.il>
wrote:

> On Sun, Dec 15, 2024 at 07:01:24PM -0600, Mbk Kamble wrote:
> > Hi.
> >     I have tried to update my GuixSystem installation over the past week
> > and system reconfigure is failing to build some derivations. The latest
> is
> > this error:
> > build of
> > /gnu/store/5x701598l7qy5j5shfvhh0xjycn0q868-python-jupytext-1.15.0.drv
> > failed
> >
> > when I looked in the log file, it shows that check phase is failing with
> > the error message:
> > ModuleNotFoundError: No module named 'toml'
> >
> > I've been using guix for a couple of years, so doing a "guix system
> > reconfigure" after "guix pull" is not new to me. But I have never
> > experienced a prolonged "system reconfigure" fail before, so I am not
> sure
> > what I am missing.
> >
> > This is my current working version info:
> > Generation 24   Nov 18 2024 21:53:10    (current)
> >   file name: /var/guix/profiles/system-24-link
> >   canonical file name: /gnu/store/yn9lr41l2igyccq5g0iphylgq9qgw7h6-system
> >   label: GNU with Linux 6.10.14
> >   bootloader: grub-efi
> >   root device: UUID: ec6f0ca7-ffa6-4dff-81a0-bd200f46ee54
> >   kernel:
> /gnu/store/x6zbnrdd8j0ilf07vgxjdgj3h6dlw0dx-linux-6.10.14/bzImage
> >   channels:
> >     nonguix:
> >       repository URL: https://gitlab.com/nonguix/nonguix
> >       branch: master
> >       commit: ad966c3844385e8f7b60b0dc915f92a1eba47e09
> >     guix:
> >       repository URL: https://git.savannah.gnu.org/git/guix.git
> >       branch: master
> >       commit: 59b2a60d0041882d732e1766e28f0df5a1ef1ac1
> >   configuration file:
> > /gnu/store/d15mv0462989b40mvljzvgw2d05ccg5x-configuration.scm
> >
> > Any help would be appreciated.
>
> It looks like it was some fallout from the python-team merge.
> python-jupytext was fixed within the past day or 2, so I'm going to
> suggest running 'guix pull' again and then trying again.
>
> --
> Efraim Flashner   <efraim@flashner.co.il>   אפרים פלשנר
> GPG key = A28B F40C 3E55 1372 662D  14F7 41AA E7DC CA3D 8351
> Confidentiality cannot be guaranteed on emails sent or received unencrypted
>