From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp0 ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id wCixH5qRdF/CLQAA0tVLHw (envelope-from ) for ; Wed, 30 Sep 2020 14:09:30 +0000 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp0 with LMTPS id mGu4G5qRdF/tSgAA1q6Kng (envelope-from ) for ; Wed, 30 Sep 2020 14:09:30 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id E074E940105 for ; Wed, 30 Sep 2020 14:09:29 +0000 (UTC) Received: from localhost ([::1]:56336 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1kNcnQ-0003oD-Mk for larch@yhetil.org; Wed, 30 Sep 2020 10:09:28 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:41554) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kNcYr-0003g0-Gd for help-guix@gnu.org; Wed, 30 Sep 2020 09:54:25 -0400 Received: from mail-qv1-xf36.google.com ([2607:f8b0:4864:20::f36]:39481) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1kNcYp-0006ik-Hh for help-guix@gnu.org; Wed, 30 Sep 2020 09:54:25 -0400 Received: by mail-qv1-xf36.google.com with SMTP id z18so903367qvp.6 for ; Wed, 30 Sep 2020 06:54:23 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=mime-version:references:in-reply-to:from:date:message-id:subject:to :cc; bh=1C5BmfVx/er4VD5dqv7QfxK4DftgZP6M5a2UYh1T8kE=; b=MKfC23Q5YTunxvFy5ox+O9QEs63xF9KUrysdmQ5QGBBDuNlz1NNbmP4HaVgCVnH6VQ HeOwiaSWPWj4qA3bU6TgiSt2ElMZVsa51hYdwlnp4i6TfMir9w8EH2V8D2ULf9urHYik xsODfv3HhDyPJk83rnwqpYkgqeD+hCksacXBrFpPnqW/YGqEwcAGNYiUpx4mKmJvu/oW irsYTU7GqK7+z4xjhw63VOVobJwmGVp28q0XYlxO/d+DvJjQW+BaB0M133cXv8pdp18S vCa/SufVG+S6GPsWztSgPM5+HGizmQD9zPehfe5Qv4K/xoTXkV2r75CtD+VPlrlM+wMX SvnA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:mime-version:references:in-reply-to:from:date :message-id:subject:to:cc; bh=1C5BmfVx/er4VD5dqv7QfxK4DftgZP6M5a2UYh1T8kE=; b=r3CTK7YtAvO9DsbiiWJsujSlsB0+izZ9mJLkdrECC8HL3hPQVAC0U4x6sY5Uz01b2J 4WSDzwy1bgIXWTbZziUjAEG26lj1RB10hmw3qoXqFjiLaekgdmmO/Z4o8TiOpj3Yg4yO D6WW/hj4XSaW8swyFmDwCxVq+zlrONGgejl6Ap7QKcKK1OKpgC+j5zv3RfdwSucldTiS 7WNt2Bs68jp3qwS35MKV432Uq5Qt+GBJN/F9FDPfmGTb158uDvAzMLMcScxA3IhO3U9t sw+U25NjV3KJHrh9nhbTsTVBCw2UIuSSvnI3tpRN4606JFAfVdhqshzTHsMKcVYhckNw mMaA== X-Gm-Message-State: AOAM530PdAcLIumhDnJJQfHoVD6gyxjBlFaTikTaJWYENj1I0Ul9ey7u 5D2X6+0nOgA23etUAwkLScbQZ3PglbgrGrIQWMg= X-Google-Smtp-Source: ABdhPJwxAG9b8aXiaVQa1EGA83AfQZNNcijYepZJb3VVTX9pxrqVuSY9ITIiWwsnRkIGGF3ASbsmWZsFU9gYBWZg0MQ= X-Received: by 2002:a05:6214:b2a:: with SMTP id w10mr2416742qvj.33.1601474062561; Wed, 30 Sep 2020 06:54:22 -0700 (PDT) MIME-Version: 1.0 References: <87r1qk65ez.fsf@gnu.org> <87wo0b3ao7.fsf@inria.fr> <4582e2f82eba477fa84352c004a0ce15@mdc-berlin.de> In-Reply-To: From: zimoun Date: Wed, 30 Sep 2020 15:54:11 +0200 Message-ID: Subject: Re: [ext] Re: failed to install the python-umap-learn package To: "Hong.Li@mdc-berlin.de" Content-Type: text/plain; charset="UTF-8" Received-SPF: pass client-ip=2607:f8b0:4864:20::f36; envelope-from=zimon.toutoune@gmail.com; helo=mail-qv1-xf36.google.com X-detected-operating-system: by eggs.gnu.org: No matching host in p0f cache. That's all we know. X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: help-guix@gnu.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Cc: =?UTF-8?Q?Ludovic_Court=C3=A8s?= , "help-guix@gnu.org" Errors-To: help-guix-bounces+larch=yhetil.org@gnu.org Sender: "Help-Guix" X-Scanner: scn0 Authentication-Results: aspmx1.migadu.com; dkim=pass header.d=gmail.com header.s=20161025 header.b=MKfC23Q5; dmarc=pass (policy=none) header.from=gmail.com; spf=pass (aspmx1.migadu.com: domain of help-guix-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=help-guix-bounces@gnu.org X-Spam-Score: -1.71 X-TUID: //IoJ6gc1aaA Dear, Please run: echo "%default-channels" > /tmp/chan.scm guix time-machine --commit=cac674d99dc4a332e6210c57ec7f1b8164f66642 \ -C /tmp/chan.scm \ -- package -i pyhton-umap-learn This will fix your initial issue, I guess. > [hli@max-login3.mdc-berlin.net:~] $ guix time-machine --commit=cd5406effa34fa5cfda7eb7bbd2ccaf5201cf523 -C /tmp/chan.scm -- package -p guix/new/.guix-profile -i python-umap-learn I have not checked in your previous email, but it is the wrong commit. > build of /gnu/store/vxf3qwhkahgzfhwp6c63vm8vky9fj5bl-python-scikit-learn-0.20.4.drv failed > View build log at '/gnu/var/log/guix/drvs/vx/f3qwhkahgzfhwp6c63vm8vky9fj5bl-python-scikit-learn-0.20.4.drv'. > guix package: error: build of `/gnu/store/vxf3qwhkahgzfhwp6c63vm8vky9fj5bl-python-scikit-learn-0.20.4.drv' failed It could be expected since the package 'python-scikit-learn' is broken: https://data.guix.gnu.org/repository/1/branch/master/package/python-scikit-learn/output-history especially for the commit you are trying (which is not the one you need for the working 'python-umap-learn' package). > Why this commit? 'python-umap-learn' should be broken > > This commit is the most recent succeeded build from 2020-04-18 19:24:20, you also suggested this commit before. Ah yeah but then what was the previous commit cd5406effa34fa5cfda7eb7bbd2ccaf5201cf523? :-) > [hli@max-login3.mdc-berlin.net:~] $ guix time-machine --commit=cac674d99dc4a332e6210c57ec7f1b8164f66642 -- help > Updating channel 'guix' from Git repository at 'https://git.savannah.gnu.org/git/guix.git'... > Updating channel 'guix-bimsb' from Git repository at 'https://github.com/BIMSBbioinfo/guix-bimsb.git'... > Updating channel 'guix-past' from Git repository at 'https://gitlab.inria.fr/guix-hpc/guix-past'... > Updating channel 'guix-bimsb-nonfree' from Git repository at 'https://github.com/BIMSBbioinfo/guix-bimsb-nonfree.git'... [...] > /builder for `/gnu/store/yaj4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.drv' failed to produce output path `/gnu/store/9vpcvp00acz4lvglfs1k69a4i05p5hbw-guix-package-cache' > build of /gnu/store/yaj4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.drv failed > View build log at '/gnu/var/log/guix/drvs/ya/j4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.drv'. > cannot build derivation `/gnu/store/zz2557r32hsq2ksa53ix4ygaskkrs2qi-profile.drv': 1 dependencies couldn't be built > guix time-machine: error: build of `/gnu/store/zz2557r32hsq2ksa53ix4ygaskkrs2qi-profile.drv' failed This comes from the extra 3 channels you added. If you remove them (see above), then it should work, I guess. Hope that helps, simon