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* gfortran - libc.so.6: version `GLIBC_2.34' not found
@ 2024-08-09  8:30 Laurent Gatto
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From: Laurent Gatto @ 2024-08-09  8:30 UTC (permalink / raw)
  To: help-guix

I'm encoutering the folling compilation issue that I require a bit of
help with. Here, I am compiling R, from source, but I have observed
similar issues in other situations.


$ make
[...]
begin installing recommended package MASS
sh: /gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/lib/libc.so.6:
version `GLIBC_2.34' not found (required by
/gnu/store/va001nyjq6zm262nvpykdj3nsznaqxd0-gfortran-11.3.0-lib/lib/libgcc_s.so.1)
make[2]: *** [Makefile:53: MASS.ts] Error 1
make[2]: Leaving directory '/home/lgatto/src/R-patched/src/library/Recommended'
make[1]: *** [Makefile:39: recommended-packages] Error 2
make[1]: Leaving directory '/home/lgatto/src/R-patched/src/library/Recommended'
make: *** [Makefile:78: stamp-recommended] Error 2
[...]

As far as I understand, GLIBC_2.34 is required by
/gnu/store/va001nyjq6zm262nvpykdj3nsznaqxd0-gfortran-11.3.0-lib/lib/libgcc_s.so.1

strings /gnu/store/va001nyjq6zm262nvpykdj3nsznaqxd0-gfortran-11.3.0-lib/lib/libgcc_s.so.1
| grep GLIBC_
GLIBC_2.14
GLIBC_2.34
GLIBC_2.2.5

and looked up in
/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/lib/libc.so.6,
and indeed not found:

strings /gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/lib/libc.so.6
| grep GLIBC_
GLIBC_2.2.5
GLIBC_2.2.6
GLIBC_2.3
GLIBC_2.3.2
GLIBC_2.3.3
GLIBC_2.3.4
GLIBC_2.4
GLIBC_2.5
GLIBC_2.6
GLIBC_2.7
GLIBC_2.8
GLIBC_2.9
GLIBC_2.10
GLIBC_2.11
GLIBC_2.12
GLIBC_2.13
GLIBC_2.14
GLIBC_2.15
GLIBC_2.16
GLIBC_2.17
GLIBC_2.18
GLIBC_2.22
GLIBC_2.23
GLIBC_2.24
GLIBC_2.25
GLIBC_2.26
GLIBC_2.27
GLIBC_2.28
GLIBC_2.29
GLIBC_2.30
GLIBC_2.32
GLIBC_2.33
GLIBC_PRIVATE


If I 'guix search glibc', I can find versions 2.35, 2.33, 2.32,
... but no 2.34. And when I look at 'guix show gfortran-toolchain', it
depends on glibc@2.35.

Any help is greatly appreciated.

Laurent


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