From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ricardo Wurmus Subject: Re: Squashfs files no longer work with singularity 3.x Date: Mon, 15 Jul 2019 04:26:19 +0200 Message-ID: <87lfx0hw38.fsf@elephly.net> References: Mime-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Return-path: Received: from eggs.gnu.org ([2001:470:142:3::10]:59011) by lists.gnu.org with esmtp (Exim 4.86_2) (envelope-from ) id 1hmqhE-0007Gr-FU for help-guix@gnu.org; Sun, 14 Jul 2019 22:26:33 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1hmqhC-00065A-MF for help-guix@gnu.org; Sun, 14 Jul 2019 22:26:32 -0400 Received: from sender-of-o51.zoho.com ([135.84.80.216]:21290) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1hmqhC-000645-6F for help-guix@gnu.org; Sun, 14 Jul 2019 22:26:30 -0400 In-reply-to: List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: help-guix-bounces+gcggh-help-guix=m.gmane.org@gnu.org Sender: "Help-Guix" To: Shane Sturrock Cc: help-guix@gnu.org Hi Shane, > However, the most recent updates/installs of Guix produce a file that > fails with "FATAL: exec /.singularity.d/actions/exec failed: no such > file or directory=E2=80=9D. I can reproduce this with singularity version 3.1.0-1.el7.centos. > $ guix pack -f squashfs -S /bin=3Dbin samtools > /gnu/store/7wpn9a4nlpyr0hgzcl65qi8fqmqz6swg-squashfs-pack.gz.squashfs > $ singularity exec /gnu/store/7wpn9a4nlpyr0hgzcl65qi8fqmqz6swg-squashfs-p= ack.gz.squashfs samtools > WARNING: passwd file doesn't exist in container, not updating > WARNING: group file doesn't exist in container, not updating > FATAL: exec /.singularity.d/actions/exec failed: no such file or direct= ory This works for me: image=3D$(guixr pack -f squashfs --entry-point=3Dbin/sh -S /bin=3Dbin s= amtools bash) singularity exec $image /bin/samtools Hope this helps! -- Ricardo