* Error when installing package, CMAKE_Fortran_COMPILER could be found [not found] <441964777.14793216.1700756479745.JavaMail.zimbra@inria.fr> @ 2023-11-24 16:53 ` Tobias Geerinckx-Rice 2023-11-28 15:42 ` Simon Tournier 0 siblings, 1 reply; 4+ messages in thread From: Tobias Geerinckx-Rice @ 2023-11-24 16:53 UTC (permalink / raw) To: Pierre Clouzet, help-guix; +Cc: control close 67416 thanks (The above is for the Debbugs control bot. The bug-guix@ address is for reporting shortcomings in Guix. For general support, please use help-guix@. I've moved this discussion there.) Hi Pierre, It appears that you haven't given the package a FORTRAN compiler to find. Try (native-inputs (list gfortran)) to add one to the build environment. Do not waste time 'guix install'ing anything, this will have 0 effect. If the build system still won't find gfortran, try (arguments `( ... #:phases (modify-phases %standard-phases (add-before 'configure 'find-gfortran (lambda _ (setenv "FC" (which "gfortran")))))) or so. Untested example, assuming the compiler binary is also named 'gfortran'. Kind regards, T G-R Sent on the go. Excuse or enjoy my brevity. ^ permalink raw reply [flat|nested] 4+ messages in thread
* Re: Error when installing package, CMAKE_Fortran_COMPILER could be found 2023-11-24 16:53 ` Error when installing package, CMAKE_Fortran_COMPILER could be found Tobias Geerinckx-Rice @ 2023-11-28 15:42 ` Simon Tournier 2023-11-30 9:44 ` Pierre Clouzet 0 siblings, 1 reply; 4+ messages in thread From: Simon Tournier @ 2023-11-28 15:42 UTC (permalink / raw) To: Tobias Geerinckx-Rice, Pierre Clouzet, help-guix Hi Pierre, On Fri, 24 Nov 2023 at 16:53, Tobias Geerinckx-Rice <me@tobias.gr> wrote: > It appears that you haven't given the package a FORTRAN compiler to find. Try > > (native-inputs (list gfortran)) In addition to Tobias’s words, the recipe will fail at the tests: --8<---------------cut here---------------start------------->8--- The following tests FAILED: 1 - ../gmsh-3.0.6-source/demos/post_processing/lowmem-anim.geo (Failed) 4 - ../gmsh-3.0.6-source/demos/simple_geo/antenna.geo (Timeout) 8 - ../gmsh-3.0.6-source/demos/simple_geo/filter.geo (Failed) 9 - ../gmsh-3.0.6-source/demos/simple_geo/hex.geo (Failed) 11 - ../gmsh-3.0.6-source/demos/simple_geo/indheat.geo (Failed) 12 - ../gmsh-3.0.6-source/demos/simple_geo/machine.geo (Timeout) 13 - ../gmsh-3.0.6-source/demos/simple_geo/piece-extr-rec.geo (Failed) 14 - ../gmsh-3.0.6-source/demos/simple_geo/piece-extr.geo (Failed) 16 - ../gmsh-3.0.6-source/demos/simple_geo/pripyrtet.geo (Failed) 18 - ../gmsh-3.0.6-source/demos/simple_geo/sphere.geo (Failed) 29 - ../gmsh-3.0.6-source/tutorial/t13.geo (SEGFAULT) 32 - ../gmsh-3.0.6-source/tutorial/t16.geo (Failed) 33 - ../gmsh-3.0.6-source/tutorial/t17.geo (Failed) 35 - ../gmsh-3.0.6-source/tutorial/t3.geo (Failed) --8<---------------cut here---------------end--------------->8--- Well, IIRC, gmsh has some dependencies, depending on the default options selected at configure time. For instance, see the current Gmsh from the module (gnu packages maths), e.g., guix edit gmsh or [1] lists all the dependencies: (propagated-inputs (list fltk gfortran glu gmp hdf5 lapack libx11 libxext mesa metis opencascade-occt)) (inputs (list fontconfig libxft python)) Moreover, I am not sure for this flag you set in your recipe: "-DCMAKE_INSTALL_PREFIX=/opt/nextsim_gnu/gmsh-3.0.6" Hope that helps. Cheers, simon 1: https://git.savannah.gnu.org/cgit/guix.git/tree/gnu/packages/maths.scm#n3233 ^ permalink raw reply [flat|nested] 4+ messages in thread
* Re: Error when installing package, CMAKE_Fortran_COMPILER could be found 2023-11-28 15:42 ` Simon Tournier @ 2023-11-30 9:44 ` Pierre Clouzet 2024-01-11 16:50 ` Simon Tournier 0 siblings, 1 reply; 4+ messages in thread From: Pierre Clouzet @ 2023-11-30 9:44 UTC (permalink / raw) To: Simon Tournier; +Cc: Tobias Geerinckx-Rice, help-guix [-- Attachment #1: Type: text/plain, Size: 3085 bytes --] Hi Simon, Thanks for your reply! I managed to make it work finally. I'm working with an old code that need this specific version of the package. Also, this code does not use configure/make/make install of cmake/make/make install way of installing. Instead I need to run a script exporting variables with a . ./script.sh command I was wondering if you could give me a hint about how to say in a manifest how to run such script (if possible). You can find such script attached. Thanks, Pierre ----- Mail original ----- > De: "Simon Tournier" <zimon.toutoune@gmail.com> > À: "Tobias Geerinckx-Rice" <me@tobias.gr>, "Pierre Clouzet" <pierre.clouzet@inria.fr>, help-guix@gnu.org > Envoyé: Mardi 28 Novembre 2023 16:42:46 > Objet: Re: Error when installing package, CMAKE_Fortran_COMPILER could be found > Hi Pierre, > > On Fri, 24 Nov 2023 at 16:53, Tobias Geerinckx-Rice <me@tobias.gr> wrote: > >> It appears that you haven't given the package a FORTRAN compiler to find. Try >> >> (native-inputs (list gfortran)) > > In addition to Tobias’s words, the recipe will fail at the tests: > > --8<---------------cut here---------------start------------->8--- > The following tests FAILED: > 1 - ../gmsh-3.0.6-source/demos/post_processing/lowmem-anim.geo (Failed) > 4 - ../gmsh-3.0.6-source/demos/simple_geo/antenna.geo (Timeout) > 8 - ../gmsh-3.0.6-source/demos/simple_geo/filter.geo (Failed) > 9 - ../gmsh-3.0.6-source/demos/simple_geo/hex.geo (Failed) > 11 - ../gmsh-3.0.6-source/demos/simple_geo/indheat.geo (Failed) > 12 - ../gmsh-3.0.6-source/demos/simple_geo/machine.geo (Timeout) > 13 - ../gmsh-3.0.6-source/demos/simple_geo/piece-extr-rec.geo (Failed) > 14 - ../gmsh-3.0.6-source/demos/simple_geo/piece-extr.geo (Failed) > 16 - ../gmsh-3.0.6-source/demos/simple_geo/pripyrtet.geo (Failed) > 18 - ../gmsh-3.0.6-source/demos/simple_geo/sphere.geo (Failed) > 29 - ../gmsh-3.0.6-source/tutorial/t13.geo (SEGFAULT) > 32 - ../gmsh-3.0.6-source/tutorial/t16.geo (Failed) > 33 - ../gmsh-3.0.6-source/tutorial/t17.geo (Failed) > 35 - ../gmsh-3.0.6-source/tutorial/t3.geo (Failed) > --8<---------------cut here---------------end--------------->8--- > > Well, IIRC, gmsh has some dependencies, depending on the default options > selected at configure time. For instance, see the current Gmsh from the > module (gnu packages maths), e.g., guix edit gmsh or [1] lists all the > dependencies: > > (propagated-inputs > (list fltk > gfortran > glu > gmp > hdf5 > lapack > libx11 > libxext > mesa > metis > opencascade-occt)) > (inputs > (list fontconfig > libxft > python)) > > Moreover, I am not sure for this flag you set in your recipe: > > "-DCMAKE_INSTALL_PREFIX=/opt/nextsim_gnu/gmsh-3.0.6" > > Hope that helps. > > Cheers, > simon > > > 1: https://git.savannah.gnu.org/cgit/guix.git/tree/gnu/packages/maths.scm#n3233 [-- Attachment #2: set_env_linux.sh --] [-- Type: application/x-shellscript, Size: 3133 bytes --] ^ permalink raw reply [flat|nested] 4+ messages in thread
* Re: Error when installing package, CMAKE_Fortran_COMPILER could be found 2023-11-30 9:44 ` Pierre Clouzet @ 2024-01-11 16:50 ` Simon Tournier 0 siblings, 0 replies; 4+ messages in thread From: Simon Tournier @ 2024-01-11 16:50 UTC (permalink / raw) To: Pierre Clouzet; +Cc: Tobias Geerinckx-Rice, help-guix Hi Pierre, Sorry for the late reply. On Thu, 30 Nov 2023 at 10:44, Pierre Clouzet <pierre.clouzet@inria.fr> wrote: > Also, this code does not use configure/make/make install of cmake/make/make install way of installing. > Instead I need to run a script exporting variables with a . ./script.sh command > I was wondering if you could give me a hint about how to say in a manifest how to run such script (if possible). > You can find such script attached. If you have not found a way in the mean time, I do not have an answer because I am a bit confused by your question. :-) Do you mean run the script with some manifest.scm file as with “guix shell -m manifest.scm” or do you mean include such script with the Guix recipe of your package variant? If I understand correctly, you are trying to package nextsim that needs one specific version of Gmsh, right? The script set_env_linux.sh reads, --8<---------------cut here---------------start------------->8--- # 1. Before compiling, install: # - necdf, necdfcxx, boost, openmpi, gcc11: # sudo apt install libnetcdf-c++4 libnetcdf-dev libblas-dev liblapack-dev libboost-dev \ # libboost-chrono-dev \ libboost-date-time-dev \ libboost-filesystem-dev \ # libboost-iostreams-dev \ libboost-log-dev \ libboost-locale-dev \ # libboost-math-dev \ libboost-mpi-dev \ libboost-program-options-dev \ # libboost-regex-dev \ libboost-serialization-dev \ libboost-system-dev \ libboost-timer-dev # - also go to dependencies/gmsh-3.0.6-source # and run the install_gmsh_for_nextsim.sh WITHOUT changing the CMAKE_PREFIX_INSTALL variable. # 2. Compiling: # -check that paths listed below, fit your configuration. # - run this script to set the environement: ". ./set_env_linux.sh" (NOT ./set_env_linux.sh) # - run make -j${nproc} --8<---------------cut here---------------end--------------->8--- and it is not clear: 1. if you want or not keep the dependencies from APT or replace them by the ones from Guix? 2. if you want to only build Gmsh with Guix and all the rest not? 3. how you would like to build nextsim? What would make sense to me would to build all using Guix; it would mean: a) package the patched version of Gmsh (somehow replace install_gmsh_for_nextsim.sh) b) tweak set_env_linux.sh for making it Guix-friendly (substitute the various hard coded PATH by Guix ones, etc.) c) replace the ’build’ phase of cmake build-system by calling this modified script by step b. Well, maybe I misread the question. :-) Cheers, simon ^ permalink raw reply [flat|nested] 4+ messages in thread
end of thread, other threads:[~2024-01-12 12:51 UTC | newest] Thread overview: 4+ messages (download: mbox.gz follow: Atom feed -- links below jump to the message on this page -- [not found] <441964777.14793216.1700756479745.JavaMail.zimbra@inria.fr> 2023-11-24 16:53 ` Error when installing package, CMAKE_Fortran_COMPILER could be found Tobias Geerinckx-Rice 2023-11-28 15:42 ` Simon Tournier 2023-11-30 9:44 ` Pierre Clouzet 2024-01-11 16:50 ` Simon Tournier
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