From: divoplade <d@divoplade.fr>
To: help-guix@gnu.org
Subject: Wrapping an R script: how do I compose the R_LIBS_SITE environment variable?
Date: Fri, 05 Feb 2021 17:14:17 +0100 [thread overview]
Message-ID: <57572613456b4704f097480b687fef4e8944cf68.camel@divoplade.fr> (raw)
Dear guix,
I am using guix to write R packages. For convenience, I created a small
R script that does the job.
To make this script work as-is, I wrapped it using wrap-program. wrap-
program creates a shell script that sets up environment variables and
then call the real script, because R needs to be able to find all the
packages and dependencies. More specifically, I need to extend the
R_LIBS_SITE environment variable to point to all the R dependencies of
my package, as well as their recursive dependencies.
How do I compute that? I only care about R dependencies, so using the
whole recursive dependency tree of my package seems too much.
My current solution is to save the R_LIBS_SITE environment from the
build procedure and just use that. The obvious problem is that it also
contains build dependencies, and I don't think it will work correctly
for cross-compiled packages.
Do you have a better idea?
Best regards,
divoplade
next reply other threads:[~2021-02-05 16:14 UTC|newest]
Thread overview: 7+ messages / expand[flat|nested] mbox.gz Atom feed top
2021-02-05 16:14 divoplade [this message]
2021-02-06 13:53 ` Wrapping an R script: how do I compose the R_LIBS_SITE environment variable? zimoun
2021-02-06 15:28 ` Ricardo Wurmus
2021-02-07 0:24 ` divoplade
2021-02-07 7:11 ` Ricardo Wurmus
2021-02-07 9:30 ` divoplade
2021-02-07 15:03 ` zimoun
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