From mboxrd@z Thu Jan 1 00:00:00 1970 From: Michael Zucchi Subject: Re: guix build problem, no RUNPATH on libpthread.so Date: Tue, 21 Apr 2020 09:41:47 +0930 Message-ID: <2cab4e5f-c9f5-f05a-625f-01e1b02ae4ce@gmail.com> References: Mime-Version: 1.0 Content-Type: text/plain; charset=utf-8; format=flowed Content-Transfer-Encoding: 8bit Return-path: Received: from eggs.gnu.org ([2001:470:142:3::10]:42074) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1jQgW4-0004MT-HM for help-guix@gnu.org; Mon, 20 Apr 2020 20:11:57 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.90_1) (envelope-from ) id 1jQgW3-0001LZ-Df for help-guix@gnu.org; Mon, 20 Apr 2020 20:11:56 -0400 Received: from mail-pl1-x62b.google.com ([2607:f8b0:4864:20::62b]:37657) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1jQgW3-0001JX-1O for help-guix@gnu.org; Mon, 20 Apr 2020 20:11:55 -0400 Received: by mail-pl1-x62b.google.com with SMTP id y22so4586289pll.4 for ; Mon, 20 Apr 2020 17:11:54 -0700 (PDT) In-Reply-To: Content-Language: en-AU List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: help-guix-bounces+gcggh-help-guix=m.gmane-mx.org@gnu.org Sender: "Help-Guix" To: zimoun Cc: help-guix On 20/4/20 11:50 pm, zimoun wrote: > Dear, > > On Mon, 20 Apr 2020 at 11:56, Michael Zucchi wrote: > > [...] > >> I ran guix environment guix --pure. > Which version (commit) of Guix do you use? > Could you provide the output of "guix describe"? > > >> Then I ran configure but it failed saying that guile 3.0 could not be >> found. After some poking i found this is provided by the guile-next >> package, so I had to manually install that. So the instructions didn't >> work right off the bat but configure then completed just fine. > Which commit of the repo are you trying to compile? > > >> However make then fails: > Depending on when was the last "guix pull" and when was the last "git > pull" and what you already compiled month ago, failing could happen; > especially because Guile has been updated from 2 to 3. > > After updating "guix pull" and "git pull", you could try: > > guix environment guix --pure > make distclean > ./configure --localstatedir=/var/ > make > > > Hope that helps. > > All the best, > simon > Rather than stuff around repeating stuff I have already worked past successfully, I just deleted everything and started from scratch:  - new guix checkout  - blew away /gnu and /var/guix  - install freshly from latest guix 1.1 binary install as listed in the online manual, it passed the signature check. https://guix.gnu.org/manual/en/html_node/Binary-Installation.html#Binary-Installation  - re-ran demon,  with --no-substitutes (users and groups were already there) But the first guix pull fails because it tries to run a 32 bit binary, so ultimately fails for the the same reason as detailed in my previous email. ... building /gnu/store/9g3mfjpxajl69krfwvdiaznz5gh54af2-guile-bootstrap-2.0.drv... builder for `/gnu/store/9g3mfjpxajl69krfwvdiaznz5gh54af2-guile-bootstrap-2.0.drv' failed with exit code 1 build of /gnu/store/9g3mfjpxajl69krfwvdiaznz5gh54af2-guile-bootstrap-2.0.drv failed View build log at '/var/log/guix/drvs/9g/3mfjpxajl69krfwvdiaznz5gh54af2-guile-bootstrap-2.0.drv.bz2'. ... notzed@shitzone:~/src$ bzcat /var/log/guix/drvs/9g/3mfjpxajl69krfwvdiaznz5gh54af2-guile-bootstrap-2.0.drv.bz2 while setting up the build environment: executing `/gnu/store/mzfkrxd4w8vqrmyrx169wj8wyw7r8i37-bash': Exec format error So I removed the --no-substitutes flag, restarted the demon, and re-ran guix pull and that ran to completion.  Then I ran guix environment guix --pure and bootstrap. Now configure finds guile fine ('yay') but make still fails when linking guix for the same reason as before, see the previous email.   MAKEINFO doc/guix-cookbook.info   PO4A doc/guix-cookbook.de.texi /home/notzed/src/guix/build-aux/missing: line 81: po4a-translate: command not found WARNING: 'po4a-translate' is missing on your system.          You might have modified some files without having the proper          tools for further handling them.  Check the 'README' file, it          often tells you about the needed prerequisites for installing          this package.  You may also peek at any GNU archive site, in          case some other package contains this missing 'po4a-translate' program. make[2]: [Makefile:5929: doc/guix-cookbook.de.texi] Error 127 (ignored) sed -i "s|guix-cookbook\.info|$(basename "doc/guix-cookbook.de.texi" | sed 's|texi$|info|')|" "doc/guix-cookbook.de.texi.tmp" sed: can't read doc/guix-cookbook.de.texi.tmp: No such file or directory make[2]: [Makefile:5930: doc/guix-cookbook.de.texi] Error 2 (ignored)   POXREF doc/guix-cookbook.de.texi cat: doc/guix-cookbook.de.texi.tmp: No such file or directory mv "doc/guix-cookbook.de.texi.tmp" "doc/guix-cookbook.de.texi" mv: cannot stat 'doc/guix-cookbook.de.texi.tmp': No such file or directory make[2]: [Makefile:5932: doc/guix-cookbook.de.texi] Error 1 (ignored)   MAKEINFO doc/guix-cookbook.de.info ./doc/guix-cookbook.de.texi: warning: document without nodes   CXX      nix/nix-daemon/guix_daemon-nix-daemon.o   CXX      nix/nix-daemon/guix_daemon-guix-daemon.o   CXX      nix/libstore/libstore_a-gc.o   CXX      nix/libstore/libstore_a-globals.o   CXX      nix/libstore/libstore_a-misc.o   CXX      nix/libstore/libstore_a-references.o   CXX      nix/libstore/libstore_a-store-api.o   CXX      nix/libstore/libstore_a-optimise-store.o   CXX      nix/libstore/libstore_a-local-store.o   CXX      nix/libstore/libstore_a-build.o   CXX      nix/libstore/libstore_a-pathlocks.o   CXX      nix/libstore/libstore_a-derivations.o   CXX      nix/libstore/libstore_a-builtins.o   CXX      nix/libstore/libstore_a-sqlite.o   AR       libstore.a   CXX      nix/libutil/libutil_a-archive.o   CXX      nix/libutil/libutil_a-affinity.o   CXX      nix/libutil/libutil_a-serialise.o   CXX      nix/libutil/libutil_a-util.o   CXX      nix/libutil/libutil_a-hash.o   CXX      nix/libutil/libutil_a-gcrypt-hash.o   AR       libutil.a   CXX      nix/boost/format/libformat_a-free_funcs.o   CXX      nix/boost/format/libformat_a-parsing.o   CXX      nix/boost/format/libformat_a-format_implementation.o   AR       libformat.a   CXXLD    guix-daemon /usr/bin/ld: /gnu/store/ahqgl4h89xqj695lgqvsaf6zh2nhy4pj-glibc-2.29/lib/libpthread.so.0: undefined reference to `__libc_vfork@GLIBC_PRIVATE' collect2: error: ld returned 1 exit status make[2]: *** [Makefile:3563: guix-daemon] Error 1 make[2]: Leaving directory '/home/notzed/src/guix' make[1]: *** [Makefile:4930: all-recursive] Error 1 make[1]: Leaving directory '/home/notzed/src/guix' make: *** [Makefile:3351: all] Error 2 notzed@shitzone:~/src/guix$ notzed@shitzone:~/src/guix$ git describe v1.1.0-440-gce5f4701d1 notzed@shitzone:~/src/guix$ guix describe Generation 1    Apr 21 2020 09:19:55    (current)   guix ce5f470     repository URL: https://git.savannah.gnu.org/git/guix.git     branch: master     commit: ce5f4701d1e5c88c622a0d05a96ddfb31c117455