* Hackatathon: 27th June! Let redo ReScience C. @ 2023-05-12 13:51 Simon TOURNIER 2023-05-12 18:46 ` [Spam:]Hackatathon: " Konrad Hinsen ` (3 more replies) 0 siblings, 4 replies; 12+ messages in thread From: Simon TOURNIER @ 2023-05-12 13:51 UTC (permalink / raw) To: guix-science@gnu.org Hi, It's time to run the second Reproducible Research hackathon! The first one was from... 2020 [1], already! The date: *Tuesday June, 27th*. Start: 9h30 (CEST) End: 17h30 The plan is to discuss and pick some topics from 9h30 to 10h using one BigBlueButton instance (link provided later). Then, let work together! For the ones who want, they can continue to use BBB for discussing, and others can synchronise using IRC (channel provides later). Around noon, before lunch break, we all will report our progress on BBB. Afternoon, repeat. Last, we end with a discussion summarizing the successes or the roadblocks and draw the lines of the experiment report. Well, anyone could come with their own topic they want to redo. We suggest to pick articles from the ReScience C journal [2] -- they provide a high level of transparency about the materials required for redoing, IMHO. Who’s in? 1: https://hpc.guix.info/blog/2020/07/reproducible-research-hackathon-experience-report/ 2: http://rescience.github.io Cheers, simon ^ permalink raw reply [flat|nested] 12+ messages in thread
* Re: [Spam:]Hackatathon: 27th June! Let redo ReScience C. 2023-05-12 13:51 Hackatathon: 27th June! Let redo ReScience C Simon TOURNIER @ 2023-05-12 18:46 ` Konrad Hinsen 2023-05-17 17:10 ` Hackatathon: " Etienne B. Roesch ` (2 subsequent siblings) 3 siblings, 0 replies; 12+ messages in thread From: Konrad Hinsen @ 2023-05-12 18:46 UTC (permalink / raw) To: Simon TOURNIER, guix-science@gnu.org Simon TOURNIER <simon.tournier@inserm.fr> writes: > It's time to run the second Reproducible Research hackathon! The first > one was from... 2020 [1], already! > > The date: *Tuesday June, 27th*. Start: 9h30 (CEST) End: 17h30 Great initiative! Unfortunately, not a good date for me. > We suggest to pick articles from the ReScience C journal [2] -- they > provide a high level of transparency about the materials required for > redoing, IMHO. COMPUTO is now another good choice, for those looking for examples from statistics: https://computo.sfds.asso.fr/ Cheers, Konrad -- --------------------------------------------------------------------- Konrad Hinsen Centre de Biophysique Moléculaire, CNRS Orléans Synchrotron Soleil - Division Expériences Saint Aubin - BP 48 91192 Gif sur Yvette Cedex, France Tel. +33-1 69 35 97 15 E-Mail: konrad DOT hinsen AT cnrs DOT fr http://dirac.cnrs-orleans.fr/~hinsen/ ORCID: https://orcid.org/0000-0003-0330-9428 Mastodon: @khinsen@scholar.social --------------------------------------------------------------------- ^ permalink raw reply [flat|nested] 12+ messages in thread
* Re: Hackatathon: 27th June! Let redo ReScience C. 2023-05-12 13:51 Hackatathon: 27th June! Let redo ReScience C Simon TOURNIER 2023-05-12 18:46 ` [Spam:]Hackatathon: " Konrad Hinsen @ 2023-05-17 17:10 ` Etienne B. Roesch 2023-05-24 13:31 ` Ludovic Courtès 2023-06-26 16:05 ` Simon TOURNIER 2023-07-17 14:00 ` Hackatathon let redo, experience report Simon TOURNIER 3 siblings, 1 reply; 12+ messages in thread From: Etienne B. Roesch @ 2023-05-17 17:10 UTC (permalink / raw) To: Simon TOURNIER; +Cc: guix-science@gnu.org [-- Attachment #1: Type: text/plain, Size: 1961 bytes --] Hi, I am in. I have used both nix and guix, but I do consider myself a beginner. I am also a plain old researcher in neuroscience, albeit with formal training in software engineering. As such I think I would find it more valuable to spend time figuring out the best way to describe "a best practice" for people like me, onboarding newcomers, and write documentation, rather than figuring out why a Makefile doesn't compile and computer says no. I am also happy to join more experienced users, of course, and follow the flow. I have timeblocked the whole, and I am relatively free of my own movement, but I can't promise I wouldn't be dragged into some boring meetings. I live in the UK (+1h), and speak English and French. :D Etienne On Fri, May 12, 2023 at 2:53 PM Simon TOURNIER <simon.tournier@inserm.fr> wrote: > Hi, > > It's time to run the second Reproducible Research hackathon! The first > one was from... 2020 [1], already! > > The date: *Tuesday June, 27th*. Start: 9h30 (CEST) End: 17h30 > > The plan is to discuss and pick some topics from 9h30 to 10h using one > BigBlueButton instance (link provided later). Then, let work together! > For the ones who want, they can continue to use BBB for discussing, and > others can synchronise using IRC (channel provides later). Around noon, > before lunch break, we all will report our progress on BBB. Afternoon, > repeat. Last, we end with a discussion summarizing the successes or the > roadblocks and draw the lines of the experiment report. > > Well, anyone could come with their own topic they want to redo. > > We suggest to pick articles from the ReScience C journal [2] -- they > provide a high level of transparency about the materials required for > redoing, IMHO. > > Who’s in? > > 1: > https://hpc.guix.info/blog/2020/07/reproducible-research-hackathon-experience-report/ > 2: http://rescience.github.io > > Cheers, > simon > > [-- Attachment #2: Type: text/html, Size: 2642 bytes --] ^ permalink raw reply [flat|nested] 12+ messages in thread
* Re: Hackatathon: 27th June! Let redo ReScience C. 2023-05-17 17:10 ` Hackatathon: " Etienne B. Roesch @ 2023-05-24 13:31 ` Ludovic Courtès 2023-05-25 10:08 ` Etienne B. Roesch 2023-05-31 10:32 ` Simon Tournier 0 siblings, 2 replies; 12+ messages in thread From: Ludovic Courtès @ 2023-05-24 13:31 UTC (permalink / raw) To: Etienne B. Roesch; +Cc: Simon TOURNIER, guix-science@gnu.org Hi Etienne, "Etienne B. Roesch" <etienne.roesch@gmail.com> skribis: > I am in. I have used both nix and guix, but I do consider myself a > beginner. I am also a plain old researcher in neuroscience, albeit with > formal training in software engineering. As such I think I would find it > more valuable to spend time figuring out the best way to describe "a best > practice" for people like me, onboarding newcomers, and write > documentation, rather than figuring out why a Makefile doesn't compile and > computer says no. I am also happy to join more experienced users, of > course, and follow the flow. I guess the goal is to make progress on providing Guix files that would let us re-run code submitted in ReScience C papers (for instance). In doing that, old-timers like me can of course provide guidance to onboard newcomers: this exercise is meaningful if we make it approachable to a wider scientific audience. We seasoned users (Simon, Konrad, myself, and anyone who feels qualified) should prepare upfront to get a more precise idea of the tasks involved and how we can onboard people. > I have timeblocked the whole, and I am relatively free of my own movement, > but I can't promise I wouldn't be dragged into some boring meetings. I live > in the UK (+1h), and speak English and French. :D Awesome. :-) BTW, the event will be in English but we can definitely onboard those who might prefer to speak French or German. Ludo’. ^ permalink raw reply [flat|nested] 12+ messages in thread
* Re: Hackatathon: 27th June! Let redo ReScience C. 2023-05-24 13:31 ` Ludovic Courtès @ 2023-05-25 10:08 ` Etienne B. Roesch 2023-05-25 12:19 ` Konrad Hinsen 2023-05-31 10:32 ` Simon Tournier 1 sibling, 1 reply; 12+ messages in thread From: Etienne B. Roesch @ 2023-05-25 10:08 UTC (permalink / raw) To: Ludovic Courtès; +Cc: Simon TOURNIER, guix-science@gnu.org [-- Attachment #1: Type: text/plain, Size: 2609 bytes --] Hi! As an editor for resci, I of course welcome .scm files and scripts, as examples that could be provided to future submissions. I would particularly looove a bullet-proof .scm config for the editorial process, which... is somewhat documented but has gaps: I have been working on this for one of the submissions I am handling at the moment; at the moment, I have mostly made sure to use guix for running the code submitted (python notebooks), which I'll push to the author's repo, and have not *yet* moved to the editorial process. The above task I have started as editor overlaps completely with the theme of the hackathon, I suppose ;) Happy to do just that and finally tick it off my todo list. I am sure Nicolas will be pleased. That may also create that opportunity to learn that I had in mind in my previous email. Also happy to serve as a guinea pig and help create onboarding procedures. :) Have an amazing week everyone! Etienne On Wed, May 24, 2023 at 2:31 PM Ludovic Courtès <ludovic.courtes@inria.fr> wrote: > Hi Etienne, > > "Etienne B. Roesch" <etienne.roesch@gmail.com> skribis: > > > I am in. I have used both nix and guix, but I do consider myself a > > beginner. I am also a plain old researcher in neuroscience, albeit with > > formal training in software engineering. As such I think I would find it > > more valuable to spend time figuring out the best way to describe "a best > > practice" for people like me, onboarding newcomers, and write > > documentation, rather than figuring out why a Makefile doesn't compile > and > > computer says no. I am also happy to join more experienced users, of > > course, and follow the flow. > > I guess the goal is to make progress on providing Guix files that would > let us re-run code submitted in ReScience C papers (for instance). In > doing that, old-timers like me can of course provide guidance to onboard > newcomers: this exercise is meaningful if we make it approachable to a > wider scientific audience. > > We seasoned users (Simon, Konrad, myself, and anyone who feels > qualified) should prepare upfront to get a more precise idea of the > tasks involved and how we can onboard people. > > > I have timeblocked the whole, and I am relatively free of my own > movement, > > but I can't promise I wouldn't be dragged into some boring meetings. I > live > > in the UK (+1h), and speak English and French. :D > > Awesome. :-) > > BTW, the event will be in English but we can definitely onboard those > who might prefer to speak French or German. > > Ludo’. > [-- Attachment #2: Type: text/html, Size: 3245 bytes --] ^ permalink raw reply [flat|nested] 12+ messages in thread
* Re: Hackatathon: 27th June! Let redo ReScience C. 2023-05-25 10:08 ` Etienne B. Roesch @ 2023-05-25 12:19 ` Konrad Hinsen 2023-05-25 12:31 ` Etienne B. Roesch 0 siblings, 1 reply; 12+ messages in thread From: Konrad Hinsen @ 2023-05-25 12:19 UTC (permalink / raw) To: Etienne B. Roesch, Ludovic Courtès Cc: Simon TOURNIER, guix-science@gnu.org Hi Etienne, > examples that could be provided to future submissions. I would particularly > looove a bullet-proof .scm config for the editorial process, which... is > somewhat documented but has gaps: I have been working on this for one of Is that for ReScience X? ReScience C is moving to a new platform, and thus to a different editorial process, so it's not worth investing much effort into the old one. Cheers, Konrad. -- --------------------------------------------------------------------- Konrad Hinsen Centre de Biophysique Moléculaire, CNRS Orléans Synchrotron Soleil - Division Expériences Saint Aubin - BP 48 91192 Gif sur Yvette Cedex, France Tel. +33-1 69 35 97 15 E-Mail: konrad DOT hinsen AT cnrs DOT fr http://dirac.cnrs-orleans.fr/~hinsen/ ORCID: https://orcid.org/0000-0003-0330-9428 Mastodon: @khinsen@scholar.social --------------------------------------------------------------------- ^ permalink raw reply [flat|nested] 12+ messages in thread
* Re: Hackatathon: 27th June! Let redo ReScience C. 2023-05-25 12:19 ` Konrad Hinsen @ 2023-05-25 12:31 ` Etienne B. Roesch 2023-05-25 12:40 ` Konrad Hinsen 0 siblings, 1 reply; 12+ messages in thread From: Etienne B. Roesch @ 2023-05-25 12:31 UTC (permalink / raw) To: Konrad Hinsen; +Cc: Ludovic Courtès, Simon TOURNIER, guix-science@gnu.org [-- Attachment #1: Type: text/plain, Size: 1166 bytes --] ReSci C… I have heard of the “new platform” for a while. Is there an ETA? Etienne On Thu, 25 May 2023 at 13:20, Konrad Hinsen <konrad.hinsen@cnrs.fr> wrote: > Hi Etienne, > > > examples that could be provided to future submissions. I would > particularly > > looove a bullet-proof .scm config for the editorial process, which... is > > somewhat documented but has gaps: I have been working on this for one of > > Is that for ReScience X? ReScience C is moving to a new platform, and > thus to a different editorial process, so it's not worth investing much > effort into the old one. > > Cheers, > Konrad. > -- > --------------------------------------------------------------------- > Konrad Hinsen > Centre de Biophysique Moléculaire, CNRS Orléans > Synchrotron Soleil - Division Expériences > Saint Aubin - BP 48 > 91192 Gif sur Yvette Cedex, France > Tel. +33-1 69 35 97 15 > E-Mail: konrad DOT hinsen AT cnrs DOT fr > http://dirac.cnrs-orleans.fr/~hinsen/ > ORCID: https://orcid.org/0000-0003-0330-9428 > Mastodon: @khinsen@scholar.social > --------------------------------------------------------------------- > [-- Attachment #2: Type: text/html, Size: 1736 bytes --] ^ permalink raw reply [flat|nested] 12+ messages in thread
* Re: Hackatathon: 27th June! Let redo ReScience C. 2023-05-25 12:31 ` Etienne B. Roesch @ 2023-05-25 12:40 ` Konrad Hinsen 0 siblings, 0 replies; 12+ messages in thread From: Konrad Hinsen @ 2023-05-25 12:40 UTC (permalink / raw) To: Etienne B. Roesch Cc: Ludovic Courtès, Simon TOURNIER, guix-science@gnu.org "Etienne B. Roesch" <etienne.roesch@gmail.com> writes: > ReSci C… I have heard of the “new platform” for a while. Is there an ETA? We are aiming for something like October. The new platform is ready and being tested. Then we have to move over the content from the old one. Cheers, Konrad. -- --------------------------------------------------------------------- Konrad Hinsen Centre de Biophysique Moléculaire, CNRS Orléans Synchrotron Soleil - Division Expériences Saint Aubin - BP 48 91192 Gif sur Yvette Cedex, France Tel. +33-1 69 35 97 15 E-Mail: konrad DOT hinsen AT cnrs DOT fr http://dirac.cnrs-orleans.fr/~hinsen/ ORCID: https://orcid.org/0000-0003-0330-9428 Mastodon: @khinsen@scholar.social --------------------------------------------------------------------- ^ permalink raw reply [flat|nested] 12+ messages in thread
* Re: Hackatathon: 27th June! Let redo ReScience C. 2023-05-24 13:31 ` Ludovic Courtès 2023-05-25 10:08 ` Etienne B. Roesch @ 2023-05-31 10:32 ` Simon Tournier 2023-05-31 17:14 ` Etienne B. Roesch 1 sibling, 1 reply; 12+ messages in thread From: Simon Tournier @ 2023-05-31 10:32 UTC (permalink / raw) To: Ludovic Courtès, Etienne B. Roesch; +Cc: guix-science@gnu.org Hi Ludo, On Wed, 24 May 2023 at 15:31, Ludovic Courtès <ludovic.courtes@inria.fr> wrote: > We seasoned users (Simon, Konrad, myself, and anyone who feels > qualified) should prepare upfront to get a more precise idea of the > tasks involved and how we can onboard people. Are you volunteering? ;-) It could be nice if we can have a list of papers from ReScience C. Then, it could helpful to spot out the tasks and how to start for Guixifying the paper. Well, I am pretty busy until Monday, 19th of June but I can dedicate some time for preparing these tasks after this date. WDYT about first collect some papers from ReScience C? Cheers, simon ^ permalink raw reply [flat|nested] 12+ messages in thread
* Re: Hackatathon: 27th June! Let redo ReScience C. 2023-05-31 10:32 ` Simon Tournier @ 2023-05-31 17:14 ` Etienne B. Roesch 0 siblings, 0 replies; 12+ messages in thread From: Etienne B. Roesch @ 2023-05-31 17:14 UTC (permalink / raw) To: Simon Tournier; +Cc: Ludovic Courtès, guix-science@gnu.org [-- Attachment #1: Type: text/plain, Size: 1251 bytes --] Ludo, Simon, I'll spare you the details, but I am organising a hackathon with students from various campuses, in a few weeks, and I have decided to propose as a project that we review the doc for guix, hoping that managing a (small) horde of beginners will identify gaps and maybe produce useful insights/content. Any comment, recommendations, steer welcome. Thanks for your talk Ludo this week, very cool! Etienne (Reading, UK) On Wed, May 31, 2023 at 11:33 AM Simon Tournier <zimon.toutoune@gmail.com> wrote: > Hi Ludo, > > On Wed, 24 May 2023 at 15:31, Ludovic Courtès <ludovic.courtes@inria.fr> > wrote: > > > We seasoned users (Simon, Konrad, myself, and anyone who feels > > qualified) should prepare upfront to get a more precise idea of the > > tasks involved and how we can onboard people. > > Are you volunteering? ;-) > > It could be nice if we can have a list of papers from ReScience C. > Then, it could helpful to spot out the tasks and how to start for > Guixifying the paper. > > Well, I am pretty busy until Monday, 19th of June but I can dedicate > some time for preparing these tasks after this date. > > WDYT about first collect some papers from ReScience C? > > > Cheers, > simon > [-- Attachment #2: Type: text/html, Size: 1772 bytes --] ^ permalink raw reply [flat|nested] 12+ messages in thread
* RE: Hackatathon: 27th June! Let redo ReScience C. 2023-05-12 13:51 Hackatathon: 27th June! Let redo ReScience C Simon TOURNIER 2023-05-12 18:46 ` [Spam:]Hackatathon: " Konrad Hinsen 2023-05-17 17:10 ` Hackatathon: " Etienne B. Roesch @ 2023-06-26 16:05 ` Simon TOURNIER 2023-07-17 14:00 ` Hackatathon let redo, experience report Simon TOURNIER 3 siblings, 0 replies; 12+ messages in thread From: Simon TOURNIER @ 2023-06-26 16:05 UTC (permalink / raw) To: guix-science@gnu.org Hi Tomorrow, do not miss the second Reproducible Research hackathon using Guix: *Tuesday June, 27th*. Start: 9h30 (CEST) End: 17h30 Please join at 9h30 the BigBlueButton instance, https://bbb.inria.fr/cou-pmi-g09-ute More details in [1]. Especially a PAD for keeping track of the plan and progress, We suggest to pick articles from the ReScience C journal [2] -- they provide a high level of transparency about the materials required for redoing, IMHO. The aim of the day is to learn altogether how to produce research reproducible papers [3] using Guix. The key points are: + writing the manifest file + describing the channel file with various bonus points as archiving on Software Heritage. 1: https://hpc.guix.info/blog/2023/05/reproducible-research-hackathon-let-redo/ 2: http://rescience.github.io 3: https://hpc.guix.info/blog/2023/06/a-guide-to-reproducible-research-papers/ Cheers, simon ^ permalink raw reply [flat|nested] 12+ messages in thread
* Hackatathon let redo, experience report. 2023-05-12 13:51 Hackatathon: 27th June! Let redo ReScience C Simon TOURNIER ` (2 preceding siblings ...) 2023-06-26 16:05 ` Simon TOURNIER @ 2023-07-17 14:00 ` Simon TOURNIER 3 siblings, 0 replies; 12+ messages in thread From: Simon TOURNIER @ 2023-07-17 14:00 UTC (permalink / raw) To: guix-science@gnu.org Hi, Please give a look at the last Hackathon about redoing published paper using Guix: https://hpc.guix.info/blog/2023/07/reproducible-research-hackathon-experience-report/ Have a nice "summer". Cheers, simon ^ permalink raw reply [flat|nested] 12+ messages in thread
end of thread, other threads:[~2023-07-17 14:01 UTC | newest] Thread overview: 12+ messages (download: mbox.gz follow: Atom feed -- links below jump to the message on this page -- 2023-05-12 13:51 Hackatathon: 27th June! Let redo ReScience C Simon TOURNIER 2023-05-12 18:46 ` [Spam:]Hackatathon: " Konrad Hinsen 2023-05-17 17:10 ` Hackatathon: " Etienne B. Roesch 2023-05-24 13:31 ` Ludovic Courtès 2023-05-25 10:08 ` Etienne B. Roesch 2023-05-25 12:19 ` Konrad Hinsen 2023-05-25 12:31 ` Etienne B. Roesch 2023-05-25 12:40 ` Konrad Hinsen 2023-05-31 10:32 ` Simon Tournier 2023-05-31 17:14 ` Etienne B. Roesch 2023-06-26 16:05 ` Simon TOURNIER 2023-07-17 14:00 ` Hackatathon let redo, experience report Simon TOURNIER
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