From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp12.migadu.com ([2001:41d0:8:6d80::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms5.migadu.com with LMTPS id IE25OK1QkGMvHwAAbAwnHQ (envelope-from ) for ; Wed, 07 Dec 2022 09:37:02 +0100 Received: from aspmx1.migadu.com ([2001:41d0:8:6d80::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp12.migadu.com with LMTPS id SN2SOK1QkGO/CwAAauVa8A (envelope-from ) for ; Wed, 07 Dec 2022 09:37:01 +0100 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id 2F89324E2D for ; Wed, 7 Dec 2022 09:37:01 +0100 (CET) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1p2pux-00078t-44; Wed, 07 Dec 2022 03:36:39 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1p2put-00078g-W2 for guix-science@gnu.org; Wed, 07 Dec 2022 03:36:36 -0500 Received: from mail-ej1-x634.google.com ([2a00:1450:4864:20::634]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1p2pur-0000LT-S9 for guix-science@gnu.org; Wed, 07 Dec 2022 03:36:35 -0500 Received: by mail-ej1-x634.google.com with SMTP id m18so10691190eji.5 for ; Wed, 07 Dec 2022 00:36:32 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20210112.gappssmtp.com; s=20210112; h=in-reply-to:content-disposition:mime-version:references:message-id :subject:cc:to:from:date:from:to:cc:subject:date:message-id:reply-to; bh=tti8RZFez5GyCj9Ow1ogPrAlxIoCg/UMZv6eP2vU6ms=; b=47oj/3+M+L0aA79st8kOzLo6YkAO/ffR0F3TxQFWbMD4T7wu6LNnJbGd2q6myQVFNe RAZ539XDRx0VPKjqI+GVdNOzztLsM9hMkiT6YuL+MGc+7r03UAyJmtjFYgiJ3TbHKWxk zloEvUXW2SwoIwuFewNZ6aTcpkoLD1GRVa+Vb6lJtqv/cqPLnSWhwiw2Iaia3De73igw wPm57qc1+2ytHnvP6zwzRR4ZTshxPq+S2Tfl83E9bCvvai4iWzEYdhofd2cfhioawdyE DhWOMUqrMKDGy4B+G+30VuYa1qHJ5As8tNdfinOQewLNBANQsKPViACbLZkXpSARg4qi /F6w== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=in-reply-to:content-disposition:mime-version:references:message-id :subject:cc:to:from:date:x-gm-message-state:from:to:cc:subject:date :message-id:reply-to; bh=tti8RZFez5GyCj9Ow1ogPrAlxIoCg/UMZv6eP2vU6ms=; b=aWg4JKaFN/4VlZuVteF/ZHMIeCMaYXDyiVTquVhpBzrgcOX8ZbebpfYtVpop+GdGnb 9vwUjKV0MZ9kaw72C8twgNiFzcoEgbx0BeCWd9kmc4iB1spcP5ygSFll6mWMtRDWN6nB sl9eokdNGToanhE0LDX2gKmcy7uRstIRqoVeV+VLKju7Av3xl4VJ01GemOFlnD2Ph4MX QJ8jSJt418X4N+IEcJgFHKPSFW8x6m6sGbZCjUNlMHJ4tjrZgd3Wlk1z3Zu6GZ8gBL9D E1Z6aagXtj2j6yeCKgAcpAY0CLikHn/DAH0jUg0m1MU5+52hMPOapN3lxLIp93tu2jwj 6u4w== X-Gm-Message-State: ANoB5pnhP+vgqjMt81jzou2cnd7WU+P1CQiPXfEQQSR6B+E3x9FL4bD0 5xkFu7/dbjrXRpEsoczk5X7ezf/IIsYdhjbfMdD7rGPoOGirqKuCsvH83Fn+lStrHGn6sQDO3ig xxnHcJJwZqn9t3pBZ+cr4lcYU9X2Pk7821/Xz8ujRU5auN8zgF+WgQr1Pp/IHsSDnijI1BaUGTN GJrg== X-Google-Smtp-Source: AA0mqf7X93C0qKI+aDTDyQL43yDfEiR1Avw1HlwF6ndr3qtG0Li5airrMc4RbBLtR/h2E/6aSxPk7A== X-Received: by 2002:a17:907:778c:b0:7ad:79c0:4669 with SMTP id ky12-20020a170907778c00b007ad79c04669mr7839470ejc.395.1670402190631; Wed, 07 Dec 2022 00:36:30 -0800 (PST) Received: from localhost (dynamic-2a01-0c23-8515-0a00-8e76-a8c1-3ced-2bc1.c23.pool.telefonica.de. [2a01:c23:8515:a00:8e76:a8c1:3ced:2bc1]) by smtp.gmail.com with ESMTPSA id 2-20020a170906218200b007a4e02e32ffsm8177087eju.60.2022.12.07.00.36.30 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Wed, 07 Dec 2022 00:36:30 -0800 (PST) Date: Wed, 7 Dec 2022 09:36:29 +0100 From: Lars-Dominik Braun To: Simon Tournier Cc: guix-science@gnu.org, Simon Tournier , lars@6xq.net Subject: Re: [PATCH] Add draft post "CRAN, a practical example for being reproducible at large scale using GNU Guix". Message-ID: References: <86y1rkitkk.fsf@gmail.com> MIME-Version: 1.0 Content-Type: multipart/signed; micalg=pgp-sha256; protocol="application/pgp-signature"; boundary="5cENZwTMaX2o+kba" Content-Disposition: inline In-Reply-To: <86y1rkitkk.fsf@gmail.com> Received-SPF: none client-ip=2a00:1450:4864:20::634; envelope-from=ldb@leibniz-psychology.org; helo=mail-ej1-x634.google.com X-Spam_score_int: -18 X-Spam_score: -1.9 X-Spam_bar: - X-Spam_report: (-1.9 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_NONE=0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: guix-science@gnu.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-science-bounces+larch=yhetil.org@gnu.org Sender: guix-science-bounces+larch=yhetil.org@gnu.org X-Migadu-Flow: FLOW_IN X-Migadu-Country: US ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1670402221; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:cc:mime-version:mime-version: content-type:content-type:in-reply-to:in-reply-to: references:references:list-id:list-help:list-unsubscribe: list-subscribe:list-post:dkim-signature; bh=tti8RZFez5GyCj9Ow1ogPrAlxIoCg/UMZv6eP2vU6ms=; b=joVPVJzxSCeEm6w6PUlMIwdY+T6Xu20yIM0aXr0I/7HgzmjqeB1ekdeeIXQjwZcbSxm1DK zpvA36gUDu4IbXoQ2X2712Zi3OyVqeQlTb2ywisLiukwEVZ4e26fEeGwluQErCv4zOE+MA URyUU44WRsCQWNQVVTLZm9spKNIONq6ULfo3bE4GkrwRfF+sMzB9c3AO7G/1GpZm8kJa3d LqXsW+NOR2Q0PvNhbUxX+ZfP75JuOGIw6XmGK3r1+KbZ2SQdLhMgpOcFcx6g8xoM8He5fj caikgK679aSOGgWgRjI+03HqnFDntzwv1+1aUQMPZmjE6Qyv0CmEuSSMcHSfyA== ARC-Seal: i=1; s=key1; d=yhetil.org; t=1670402221; a=rsa-sha256; cv=none; b=EfwNJjzDple6oiLp6Rj66DLSa/IBAHcu56i1trsYyfzbIzvvG6BC587XDKgagEW5PMLRx2 reOoLhYZ13HILHbGpExSRKU2334tDIvCTkqVYFzkmqjRe5sExvcUIspAFmeEqA4o6yaREC YhEP7xMT5xB9Y2bwVVMZ53bFyAO784J/fgRgBnd0jCnHD63JbGt/sRGZ5hXqaRI+5IiPtG qitAp/V1VYSXKEzcgaufnVLMxTw/l+A9ZtmNhHAIKMC0h5enBojXUSN8C/svDMY8g0JerS 3mp4xSwJayuWkZjDmfBTu6AMdBa5heG//KqrkRQZpJ0ov/qNZ6O5JAen/9hvkw== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=pass header.d=leibniz-psychology-org.20210112.gappssmtp.com header.s=20210112 header.b="47oj/3+M"; dmarc=none; spf=pass (aspmx1.migadu.com: domain of "guix-science-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-science-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: -3.57 Authentication-Results: aspmx1.migadu.com; dkim=pass header.d=leibniz-psychology-org.20210112.gappssmtp.com header.s=20210112 header.b="47oj/3+M"; dmarc=none; spf=pass (aspmx1.migadu.com: domain of "guix-science-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-science-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 2F89324E2D X-Spam-Score: -3.57 X-Migadu-Scanner: scn1.migadu.com X-TUID: LKWTkRPc04Vf --5cENZwTMaX2o+kba Content-Type: multipart/mixed; boundary="kJFz3GKynzrcnPwd" Content-Disposition: inline --kJFz3GKynzrcnPwd Content-Type: text/plain; charset=utf-8 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Hi Simon, > Applied, thanks. It is under drafts/ [1]. Last round proofread before > publishing. On Friday? Friday sounds good. I=E2=80=99m attching minor changes to the synax highlig= hting. Thanks, Lars --=20 Lars-Dominik Braun Wissenschaftlicher Mitarbeiter/Research Associate www.leibniz-psychology.org ZPID - Leibniz-Institut f=C3=BCr Psychologie / ZPID - Leibniz Institute for Psychology Universit=C3=A4tsring 15 D-54296 Trier - Germany Tel.: +49=E2=80=93651=E2=80=93201-4964 --kJFz3GKynzrcnPwd Content-Type: text/plain; charset=utf-8 Content-Disposition: attachment; filename="0001-reproducible-cran-Fix-console-syntax-highlighting.patch" Content-Transfer-Encoding: quoted-printable =46rom f1019fa43a34a9cf5e394c86f8389dd6ce4b07dc Mon Sep 17 00:00:00 2001 =46rom: Lars-Dominik Braun Date: Wed, 7 Dec 2022 09:33:21 +0100 Subject: [PATCH] reproducible-cran: Fix console syntax highlighting. * drafts/reproducible-cran.md: Add $ symbols to the beginning of line. --- drafts/reproducible-cran.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/drafts/reproducible-cran.md b/drafts/reproducible-cran.md index c759b02..31e3e2a 100644 --- a/drafts/reproducible-cran.md +++ b/drafts/reproducible-cran.md @@ -32,7 +32,7 @@ in Guix proper, would look like this: 3. Run your code. =20 ```console - guix shell -m manifest.scm -- R -e 'library(zoid)' + $ guix shell -m manifest.scm -- R -e 'library(zoid)' ``` =20 Although Guix displays hints which modules are missing when trying to @@ -115,14 +115,14 @@ Using guix-cran requires the following steps: 3. Run: =20 ```console - guix time-machine -C channels.scm -- shell -m manifest.scm -- R -e 'lib= rary(zoid)' + $ guix time-machine -C channels.scm -- shell -m manifest.scm -- R -e 'l= ibrary(zoid)' ``` =20 For true reproducibility it=E2=80=99s necessary to pin the channels to a specific commit by running =20 ```console -guix time-machine -C channels.scm -- describe -f channels > channels.pinne= d.scm +$ guix time-machine -C channels.scm -- describe -f channels > channels.pin= ned.scm ``` =20 once and using `channels.pinned.scm` instead of `channels.scm` from there = on. --=20 2.38.1 --kJFz3GKynzrcnPwd-- --5cENZwTMaX2o+kba Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQGzBAABCAAdFiEEyk+M9DfXR4/aBV/UQhN3ARo3hEYFAmOQUIsACgkQQhN3ARo3 hEap6Qv+LoIsC0DNS0dr2o22D61HJ8rn7/kg29+JlKapY4Y8RD8kCyPYYV39onxq Nxef/9iD2HoigJaJR+y/W77qN229zyN4lXRr4aLs6zqfgRddi7U9xSpfWnbJB3gK 0LVGNkjOuO1nwzxUpdh8ZTgCSQaUF+krlPAtvxU+eW66gSB8kD0eHyKTfwOISspa 1lsXgWDrWoNoefqC2TtDxPMhI5z7OaamptZsArWKgyzqXhE6rvYXswFcKP4R/9kx Vu6mlmGSiDNta0FQGoGxWuMJDKEJWevoVQx9ZYtPawtAWJbqsAD1r09V6VPWbMnb sUibAradrh7+j3Jn/zLSpnyUfrDZ7y20d9Ff1m72tMGL2kljTADUTHg69De07MiB uPjZXaZe8vN0BZrNGqgThqKNpiok/Wn6uHNLHYYUa5uZ1TBZlqjyptc9ytAvNzwt hTR5eXPiYvpEJAohbS5Oghh9+ZnHTVS17GwvTU4RXeFedNzNi5Vq289ponqu9J/N rQ2dDgwi =C09a -----END PGP SIGNATURE----- --5cENZwTMaX2o+kba--