From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp0 ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id YNh/FSBAGF9jHQAA0tVLHw (envelope-from ) for ; Wed, 22 Jul 2020 13:33:20 +0000 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp0 with LMTPS id yKBYESBAGF9OegAA1q6Kng (envelope-from ) for ; Wed, 22 Jul 2020 13:33:20 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id E01BD9401AE for ; Wed, 22 Jul 2020 13:33:19 +0000 (UTC) Received: from localhost ([::1]:54570 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1jyEs2-0004uF-Ro for larch@yhetil.org; Wed, 22 Jul 2020 09:33:18 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:41570) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1jyA78-0006ib-VZ for guix-science@gnu.org; Wed, 22 Jul 2020 04:28:34 -0400 Received: from mhgbbhxrt02p.mhg.thalesgroup.com ([192.93.166.102]:44804) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1jyA73-0006xR-LV for guix-science@gnu.org; Wed, 22 Jul 2020 04:28:32 -0400 Received: from mhgbbhxrt02p.mhg.thalesgroup.com (localhost [127.0.0.1]) by localhost (Postfix) with SMTP id 4BBTBB2q1Xz3dT; Wed, 22 Jul 2020 10:28:18 +0200 (CEST) Content-Type: text/plain; charset="utf-8" Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 (1.0) Subject: Re: Workflows with SciPipe From: Konrad Hinsen In-Reply-To: <875zaiqpc0.fsf@inria.fr> Date: Wed, 22 Jul 2020 10:28:14 +0200 CC: References: <875zaiqpc0.fsf@inria.fr> To: =?utf-8?Q?Ludovic_Court=C3=A8s?= X-Mailer: iPad Mail (17F80) X-Originating-IP: [10.78.11.29] Message-ID: <9daa1c5e-bcb6-4521-8e1e-632cd01cbf61@CNREXCMBX07P.core-res.rootcore.local> Received-SPF: pass client-ip=192.93.166.102; envelope-from=Konrad.HINSEN@cnrs.fr; helo=mhgbbhxrt02p.mhg.thalesgroup.com X-detected-operating-system: by eggs.gnu.org: First seen = 2020/07/22 04:28:18 X-ACL-Warn: Detected OS = Linux 3.11 and newer X-Spam_score_int: -16 X-Spam_score: -1.7 X-Spam_bar: - X-Spam_report: (-1.7 / 5.0 requ) BAYES_00=-1.9, RCVD_IN_DNSWL_LOW=-0.7, RCVD_IN_MSPIKE_BL=0.01, RCVD_IN_MSPIKE_L3=0.9, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=no autolearn_force=no X-Spam_action: no action X-Mailman-Approved-At: Wed, 22 Jul 2020 09:32:27 -0400 X-BeenThere: guix-science@gnu.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-science-bounces+larch=yhetil.org@gnu.org Sender: "Guix-Science" X-Scanner: scn0 Authentication-Results: aspmx1.migadu.com; dkim=none; dmarc=none; spf=pass (aspmx1.migadu.com: domain of guix-science-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-science-bounces@gnu.org X-Spam-Score: -1.01 X-TUID: 9K+pxMg1OiFs Hi everyone, > Le 20 juil. 2020 =C3=A0 15:38, Ludovic Court=C3=A8s =20 >=20 > SciPipe is implemented as a Go library. Although the article mentions > reproducibility, SciPipe seems to not take care of software deployment. It doesn=E2=80=99t. But since it should be easy to package in Guix... no pro= blem! ;-) Some background information: SciPipe is part of the thesis work of Samuel La= mpa. I happened to be a member of his PhD jury, and in the end I invited him= to write this paper for the =E2=80=9CScientific Programming=E2=80=9D depart= ment of CiSE. If anyone here has some nice use of Guix to share, you are more than welcome= to contribute an article for that department as well! Cheers, Konrad