From: Thibault Lestang <t.lestang@imperial.ac.uk>
To: guix-science <guix-science@gnu.org>
Cc: Simon Tournier <zimon.toutoune@gmail.com>
Subject: Re: Conda environments and reproducibility
Date: Fri, 16 Dec 2022 10:16:55 +0000 [thread overview]
Message-ID: <87fsdfejfv.fsf@imperial.ac.uk> (raw)
In-Reply-To: <86y1rt5xoz.fsf@gmail.com>
Simon Tournier <zimon.toutoune@gmail.com> writes:
> Well, we have not spoken about running something. We could also write a
> small Python script plotting something using Numpy and/or Scipy and try
> to run the Seurat vignette.
>
> From my experience, after some months (from 2-3 to 6), Conda will fail.
> Especially after an update of the system (apt upgrade)–and it can worse
> with a ’dist-upgrade’. :-)
Well let's see. I just set up a Gitlab repo with a weekly pipeline (re)creating
a conda env from an environment.yml spec I generated earlier this morning.
https://framagit.org/tlestang/conda-python-example
Just Python for now but anyone feel free to contribute an R env as well.
-- Thibault
next prev parent reply other threads:[~2022-12-16 10:23 UTC|newest]
Thread overview: 25+ messages / expand[flat|nested] mbox.gz Atom feed top
2022-11-28 17:28 Conda environments and reproducibility Thibault Lestang
2022-11-28 19:45 ` Konrad Hinsen
2022-11-29 10:32 ` Thibault Lestang
2022-11-29 13:12 ` Hugo Buddelmeijer
2022-11-29 13:39 ` Konrad Hinsen
2022-12-01 14:01 ` Hugo Buddelmeijer
2022-12-02 13:01 ` Konrad Hinsen
2022-11-29 20:10 ` Simon Tournier
2022-12-16 10:16 ` Thibault Lestang [this message]
2023-03-11 11:05 ` Ludovic Courtès
2023-03-11 11:43 ` Simon Tournier
2023-03-13 10:26 ` Lestang, Thibault
2023-03-13 11:00 ` Ricardo Wurmus
2023-03-13 12:38 ` Simon Tournier
2023-03-16 10:26 ` Ludovic Courtès
2023-03-16 13:40 ` Thibault Lestang
2023-04-03 15:22 ` Simon Tournier
2023-04-04 12:19 ` Thibault Lestang
2022-12-02 10:52 ` Ludovic Courtès
2022-12-02 11:05 ` Ludovic Courtès
2022-12-02 13:59 ` Simon Tournier
2022-12-02 14:06 ` Hugo Buddelmeijer
2022-11-28 20:46 ` Simon Tournier
2022-11-29 10:41 ` Thibault Lestang
2022-11-29 14:25 ` Simon Tournier
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