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Resent-From: Arun Isaac Original-Sender: "Debbugs-submit" Resent-CC: arunisaac@systemreboot.net, jgart@dismail.de, guix-patches@gnu.org Resent-Date: Wed, 03 Jul 2024 15:08:04 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 69736 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69736@debbugs.gnu.org Cc: Arun Isaac , Arun Isaac , jgart X-Debbugs-Original-Xcc: Arun Isaac , jgart Received: via spool by 69736-submit@debbugs.gnu.org id=B69736.172001927715729 (code B ref 69736); Wed, 03 Jul 2024 15:08:04 +0000 Received: (at 69736) by debbugs.gnu.org; 3 Jul 2024 15:07:57 +0000 Received: from localhost ([127.0.0.1]:40084 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sP1aP-00045X-8h for submit@debbugs.gnu.org; Wed, 03 Jul 2024 11:07:57 -0400 Received: from mugam.systemreboot.net ([139.59.75.54]:45696) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sP1aN-00044m-5k for 69736@debbugs.gnu.org; Wed, 03 Jul 2024 11:07:55 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=systemreboot.net; s=default; h=Content-Transfer-Encoding:MIME-Version: References:In-Reply-To:Message-ID:Date:Subject:Cc:To:From:Sender:Reply-To: Content-Type:Content-ID:Content-Description:Resent-Date:Resent-From: Resent-Sender:Resent-To:Resent-Cc:Resent-Message-ID:List-Id:List-Help: List-Unsubscribe:List-Subscribe:List-Post:List-Owner:List-Archive; bh=UDDNq+3owfGvIL9kcuAduBPp2W7/Lzitgu8ZcQnW57E=; b=BDO8fp1ntRFIyYMaPXCWgs65Pb FnzOiWtc4rHsM+/zQaFTPswZuRMGTaEKinLGxM/qtlFPSPTHQeXZ7A1ED76lgE6/aGXFzdaQq5vem Ah8w6Wuw30JjQTgbSR9YK/HE24Q6l3SXhpcbN/EuEhdDB+DHLxJo4ctQc7CSyzBJC/Jud45siM/Hb mKH3mwlxJAZ6PU2qbiaOzT3Aa5YKjQATSIiWnPEP7T8QOXi027bt2xXZvUiKamqhdqWy8Fc0OB9vE rYcVF5/PkgxdEnFhhR4cUzkeq7OcNeqvEWDEe6VcYvDgk7ZwINhAIZsXDoLB+VcGKnY9ba2I9jKs9 lhEekV2Q==; Received: from [192.168.2.1] (port=40016 helo=localhost.localdomain) by systemreboot.net with esmtpsa (TLS1.3) tls TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384 (Exim 4.96.1) (envelope-from ) id 1sP1WR-0005KA-1n; Wed, 03 Jul 2024 16:03:52 +0100 From: Arun Isaac Date: Wed, 3 Jul 2024 16:07:21 +0100 Message-ID: X-Mailer: git-send-email 2.45.2 In-Reply-To: References: MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: guix-patches-bounces+larch=yhetil.org@gnu.org X-Migadu-Country: US X-Migadu-Flow: FLOW_IN X-Migadu-Queue-Id: 37F6E386CE X-Migadu-Scanner: mx13.migadu.com X-Migadu-Spam-Score: -3.79 X-Spam-Score: -3.79 X-TUID: FnFduzp6f0R9 * gnu/packages/bioinformatics.scm (python-cwltool): New variable. Change-Id: Ic374d4c02b69c4e6c923d1cc17e629d4a3a6221c --- gnu/packages/bioinformatics.scm | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 063017a8aa..b83e18ea78 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5816,6 +5816,18 @@ (define-public cwltool CWL descriptions.") (license license:asl2.0))) +;; python-toil tightly integrates with cwltool using it as a library. So, +;; create a library version of cwltool where inputs become propagated inputs. +(define-public python-cwltool + (package + (inherit cwltool) + (name "python-cwltool") + (inputs + (list node)) + (propagated-inputs + (modify-inputs (package-inputs cwltool) + (delete "node"))))) + (define-public python-dendropy (package (name "python-dendropy") -- 2.45.2