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From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <66966@debbugs.gnu.org>
Cc: Ricardo Wurmus <rekado@elephly.net>
Subject: [bug#66966] [PATCH 12/13] gnu: Add r-bbcanalyzer.
Date: Mon, 6 Nov 2023 12:06:48 +0100	[thread overview]
Message-ID: <ef85d27aab8c0a93b89d2803130666f1ffe929ec.1699268809.git.madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <302230715db60dbcab23676e1c67c53a567884e2.1699268809.git.madalinionel.patrascu@mdc-berlin.de>

* gnu/packages/bioconductor.scm (r-bbcanalyzer): New variable.

Change-Id: Icd3c77c9522d73638ddb0934ad332ddb7b947a8e
---
 gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
 1 file changed, 30 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a8fa9d7af4..384bb7cbdf 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -22550,6 +22550,36 @@ (define-public r-baynorm
 point estimates from posterior (2D array) or samples from posterior (3D array).")
     (license license:gpl2+)))
 
+(define-public r-bbcanalyzer
+  (package
+    (name "r-bbcanalyzer")
+    (version "1.32.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "BBCAnalyzer" version))
+       (sha256
+        (base32 "108jcgsf5hyj348y17hcw8m3zcfjgzpx8nz4n5jgxp2lgxjyizy1"))))
+    (properties `((upstream-name . "BBCAnalyzer")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-biostrings
+           r-genomicranges
+           r-iranges
+           r-rsamtools
+           r-summarizedexperiment
+           r-variantannotation))
+    (home-page "https://bioconductor.org/packages/BBCAnalyzer")
+    (synopsis "Visualizing base counts")
+    (description
+     "BBCAnalyzer is a package for visualizing the relative or absolute number
+of bases, deletions and insertions at defined positions in sequence alignment
+data available as bam files in comparison to the reference bases.  Markers for
+the relative base frequencies, the mean quality of the detected bases, known
+mutations or polymorphisms and variants called in the data may additionally be
+included in the plots.")
+    (license license:lgpl3)))
+
 (define-public r-biocthis
   (package
     (name "r-biocthis")
-- 
2.41.0





  parent reply	other threads:[~2023-11-06 11:27 UTC|newest]

Thread overview: 15+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2023-11-06 10:59 [bug#66966] [Patch] gnu: Add r-bcrank, r-bbcanalyzer, r-baynorm, r-bb, r-bayesspace, r-rcppdist, r-bayesknockdown, r-basicstarrseq, r-basics, r-basic4cseq, r-bsgenome-ecoli-ncbi-20080805, r-bags and r-breastcancervdx Mădălin Ionel Patrașcu
2023-11-06 11:06 ` [bug#66966] [PATCH 01/13] gnu: Add r-breastcancervdx Mădălin Ionel Patrașcu
2023-11-06 11:06   ` [bug#66966] [PATCH 02/13] gnu: Add r-bags Mădălin Ionel Patrașcu
2023-11-06 11:06   ` [bug#66966] [PATCH 03/13] gnu: Add r-bsgenome-ecoli-ncbi-20080805 Mădălin Ionel Patrașcu
2023-11-06 11:06   ` [bug#66966] [PATCH 04/13] gnu: Add r-basic4cseq Mădălin Ionel Patrașcu
2023-11-06 11:06   ` [bug#66966] [PATCH 05/13] gnu: Add r-basics Mădălin Ionel Patrașcu
2023-11-06 11:06   ` [bug#66966] [PATCH 06/13] gnu: Add r-basicstarrseq Mădălin Ionel Patrașcu
2023-11-06 11:06   ` [bug#66966] [PATCH 07/13] gnu: Add r-bayesknockdown Mădălin Ionel Patrașcu
2023-11-06 11:06   ` [bug#66966] [PATCH 08/13] gnu: Add r-rcppdist Mădălin Ionel Patrașcu
2023-11-06 11:06   ` [bug#66966] [PATCH 09/13] gnu: Add r-bayesspace Mădălin Ionel Patrașcu
2023-11-06 11:06   ` [bug#66966] [PATCH 10/13] gnu: Add r-bb Mădălin Ionel Patrașcu
2023-11-06 11:06   ` [bug#66966] [PATCH 11/13] gnu: Add r-baynorm Mădălin Ionel Patrașcu
2023-11-06 11:06   ` Mădălin Ionel Patrașcu [this message]
2023-11-06 11:06   ` [bug#66966] [PATCH 13/13] gnu: Add r-bcrank Mădălin Ionel Patrașcu
2023-11-13 14:09   ` bug#66966: [PATCH 01/13] gnu: Add r-breastcancervdx Ricardo Wurmus

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