[bug#66778] [PATCH 00/19] gnu: Astronomy 2023/10 updates.

[bug#66778] [PATCH 00/19] gnu: Astronomy 2023/10 updates.

[Sharlatan Hellseher]

Hi Guix,

Please review October's patch series updating and improving packages related
to (gnu packages astronomy).

Patch series was built without issues and did not introduce regression for
dependent packages.

./pre-inst-env guix build --rounds=2 erfa glnemo2 imppg libxisf python-asdf python-astroalign python-astropy python-cdflib python-crds python-ephem python-jwst python-pyerfa python-pynbody python-pytest-astropy python-pytest-doctestplus python-pytest-remotedata python-spherical-geometry

/gnu/store/3yh8r1vxrlnqs008ma5424yaacp0r0d3-python-spherical-geometry-1.2.22
/gnu/store/s04bn2j8kq71a0vmip763an7cxic9642-python-pytest-remotedata-0.4.1
/gnu/store/k22abqi9lzyfpv0cppzcl8gbgbas1pzq-python-pytest-doctestplus-1.0.0
/gnu/store/is5amhbdchfwgr8937p0cni7g1rbd71a-python-pytest-astropy-0.11.0
/gnu/store/daqa4jcszyxv09g2wrvgir9pz3vdj7xj-python-pynbody-1.4.1
/gnu/store/vlv5q4f28an5valrjc0ikinskpbiqy6r-python-pyerfa-2.0.1.1
/gnu/store/6b2f0646f6hppqjfldhnrqpxm1sn9anc-python-jwst-1.12.5
/gnu/store/pi1iw8fchz4lygjq0kfrn98crz81mwi2-python-ephem-4.1.5
/gnu/store/a3qfyskrf0y5kisj8igvxc7g5a3531fr-python-crds-11.17.7
/gnu/store/wwih8y7vxlzmj7pgy71rfqldm8hhcpkw-python-cdflib-1.2.3
/gnu/store/4iyzv925fvgzmb26fhm7d655dar81x6d-python-astropy-5.3.4
/gnu/store/2wnw8y49l6addfcwrhbq10040dgv1k2y-python-astroalign-2.5.0
/gnu/store/17fwh5dagk576brmyih01r2awf3hzsa6-python-asdf-3.0.0
/gnu/store/ij7xzk0077p7g2kx92ys7xazqb8rp4zg-libxisf-0.2.10
/gnu/store/sn3z4kxsxdf57iljwmdyd3z789gafqgg-imppg-0.6.5
/gnu/store/a9a2nchr6raf1715ak36vqjjz4hk3s0q-glnemo2-1.21.0
/gnu/store/5jw73r8vinkfgakcyqx8d4drqpg9v81z-erfa-2.0.1

./pre-inst-env guix build $(./pre-inst-env guix refresh --list-dependent erfa glnemo2 imppg libxisf python-asdf python-astroalign python-astropy python-cdflib python-crds python-ephem python-jwst python-pyerfa python-pynbody python-pytest-astropy python-pytest-doctestplus python-pytest-remotedata python-spherical-geometry |awk -F: '{print $2}')

/gnu/store/6b2f0646f6hppqjfldhnrqpxm1sn9anc-python-jwst-1.12.5
/gnu/store/wcb81q01y8d1qlmvwlsad3x7sjzl7yj8-beets-bandcamp-0.1.4
/gnu/store/p5hcj2glkjbjfwh67330r6nnaz1v5aka-emacs-calibredb-2.12.0
/gnu/store/a7b6srwgixrwl4842r2snh4j6dfvlngk-python-sunpy-5.0.1
/gnu/store/2wnw8y49l6addfcwrhbq10040dgv1k2y-python-astroalign-2.5.0
/gnu/store/rwsay49d8a6zbrvkl9mir110qwk1lqbr-python-tslearn-0.6.2
/gnu/store/6f1gviws0sxjyxzgy0a7dz1zhy9ac9k7-python-regions-0.7
/gnu/store/wkxqrwzb1hh7qhl5gxh1nj8p68wziv2f-python-poliastro-0.17.0
/gnu/store/17fwh5dagk576brmyih01r2awf3hzsa6-python-asdf-3.0.0
/gnu/store/5najcxfg77ap8hnnv3lkqlzhk58brzp5-python-casa-formats-io-0.2.1
/gnu/store/7za8zq0ip3admdyzj2ry1fkwr47rzm1g-python-pytorch-lightning-2.0.2
/gnu/store/fig4v3b0y0awbg3rhfa6wiwzhyqaw74i-julia-astrotime-0.7.0

Sharlatan Hellseher (19):
  gnu: glnemo2: Fix home-page.
  gnu: imppg: Use standard configure phase.
  gnu: python-spherical-geometry: Simplify package.
  gnu: python-spherical-geometry: Enable tests.
  gnu: python-pynbody: Update to 1.4.1.
  gnu: python-cdflib: Update to 1.2.2.
  gnu: python-astroalign: Update to 2.5.0.
  gnu: erfa: Update to 2.0.1.
  gnu: python-pyerfa: Update to 2.0.1.1.
  gnu: libxisf: Update to 0.2.10.
  gnu: python-astropy: Update to 5.3.4.
  gnu: python-cdflib: Update to 1.2.3.
  gnu: python-crds: Update to 11.17.7.
  gnu: python-ephem: Update to 4.1.5.
  gnu: python-jwst: Update to 1.12.5.
  gnu: python-pytest-remotedata: Update to 0.4.1.
  gnu: python-pytest-doctestplus: Update to 1.0.0.
  gnu: python-pytest-astropy: Update to 0.11.0.
  gnu: python-asdf: Update to 3.0.0.

 gnu/packages/astronomy.scm    | 142 +++++++++++++++++++---------------
 gnu/packages/python-check.scm |  12 +--
 2 files changed, 85 insertions(+), 69 deletions(-)


base-commit: 50f514762bf35b029eb89518c5ab5b3d1bf27f48
-- 
2.41.0

[bug#66778] [PATCH 01/19] gnu: glnemo2: Fix home-page.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (glnemo2): Fix home-page to point to actual
project's one.
---
 gnu/packages/astronomy.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 764a674a6d..0eaa734e84 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -869,7 +869,7 @@ (define-public glnemo2
            libtirpc
            qtbase-5
            zlib))
-    (home-page "https://projets.lam.fr/projects/unsio/wiki")
+    (home-page "https://projets.lam.fr/projects/glnemo2/wiki/Wiki")
     (synopsis "3D interactive visualization program for n-body like particles")
     (description
      "GLNEMO2 is an interactive 3D visualization program which displays
-- 
2.41.0

[bug#66778] [PATCH 02/19] gnu: imppg: Use standard configure phase.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (imppg): Use G-expressions.
[arguments]{phases}: Use 'configure standard phase instead of
replacement.
---
 gnu/packages/astronomy.scm | 15 ++-------------
 1 file changed, 2 insertions(+), 13 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 0eaa734e84..63b502be81 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3100,19 +3100,8 @@ (define-public imppg
         (base32 "0a6wb1a9adwd01dmy0r03xxp8iz9y7mvh30088ajilhj4lf90vxa"))))
     (build-system cmake-build-system)
     (arguments
-     `(#:tests? #f                      ;no test provided
-       #:phases
-       (modify-phases %standard-phases
-         (replace 'configure
-           (lambda* (#:key outputs #:allow-other-keys)
-             (mkdir-p "build")
-             (chdir "build")
-             (invoke
-              "cmake"
-              "-G" "Unix Makefiles"
-              "-DCMAKE_BUILD_TYPE=Release"
-              (string-append "-DCMAKE_INSTALL_PREFIX=" (assoc-ref outputs "out"))
-              ".."))))))
+     (list ;; No test provided
+      #:tests? #f))
     (native-inputs
      (list boost pkg-config))
     (inputs
-- 
2.41.0

[bug#66778] [PATCH 03/19] gnu: python-spherical-geometry: Simplify package.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-spherical-geometry):
[arguments]{phases}<preparations>: Switch to
SETUPTOOLS_SCM_PRETEND_VERSION evnar instead modifying setup.py.
---
 gnu/packages/astronomy.scm | 7 +------
 1 file changed, 1 insertion(+), 6 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 63b502be81..18cf562e12 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2480,12 +2480,7 @@ (define-public python-spherical-geometry
       #~(modify-phases %standard-phases
           (add-after 'unpack 'preparations
             (lambda _
-              ;; Fixing: setuptools-scm was unable to detect version for ...
-              (substitute* "setup.py"
-                (("use_scm_version=True")
-                 (format #f "version=~s" #$version))
-                (("setup_requires=\\['setuptools_scm'\\],.*")
-                 ""))
+              (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version)
               ;; Use our own libraries in place of bundles.
               (setenv "USE_SYSTEM_QD" "1"))))))
     (native-inputs
-- 
2.41.0

[bug#66778] [PATCH 04/19] gnu: python-spherical-geometry: Enable tests.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-spherical-geometry): Enable tests.
[build-system]: Switch to pyproject-build-system.
[arguments]{phases}: Add 'build-extensions phase.
---
 gnu/packages/astronomy.scm | 13 ++++++++-----
 1 file changed, 8 insertions(+), 5 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 18cf562e12..3b85d4ec9e 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2470,19 +2470,22 @@ (define-public python-spherical-geometry
        (file-name (git-file-name name version))
        (sha256
         (base32 "0kzcncqir4v7nhk9lxj9gxr32p3krkaqa58y2i4kksgxxy24qw4z"))))
-    (build-system python-build-system)
+    (build-system pyproject-build-system)
     (arguments
      (list
-      ;; NOTE: (Sharlatan-20220523T231348+0100): Tests depends on old Python2
-      ;; libarry `sphere'
-      #:tests? #f
+      ;; XXX: Disable one failing test
+      ;; See https://github.com/spacetelescope/spherical_geometry/issues/252
+      #:test-flags #~(list "-k" "not test_overlap")
       #:phases
       #~(modify-phases %standard-phases
           (add-after 'unpack 'preparations
             (lambda _
               (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version)
               ;; Use our own libraries in place of bundles.
-              (setenv "USE_SYSTEM_QD" "1"))))))
+              (setenv "USE_SYSTEM_QD" "1")))
+          (add-before 'check 'build-extensions
+            (lambda _
+              (invoke "python" "setup.py" "build_ext" "--inplace"))))))
     (native-inputs
      (list python-pytest
            python-setuptools-scm))
-- 
2.41.0

[bug#66778] [PATCH 05/19] gnu: python-pynbody: Update to 1.4.1.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-pynbody): Update to 1.4.1.
[source]: Switch to git-fetch.
---
 gnu/packages/astronomy.scm | 16 ++++++++++++----
 1 file changed, 12 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 3b85d4ec9e..9cdf264389 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3403,13 +3403,21 @@ (define-public python-pyerfa
 (define-public python-pynbody
   (package
     (name "python-pynbody")
-    (version "1.3.1")
+    (version "1.4.1")
     (source
      (origin
-       (method url-fetch)
-       (uri (pypi-uri "pynbody" version))
+       (method git-fetch) ;PyPi doesn't have not prebuit version.
+       (uri (git-reference
+             (url "https://github.com/pynbody/pynbody")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
        (sha256
-        (base32 "1yp7ja66zqmbnh7bbwbyimxq1nkrmjrcif2rzfm1hswm0fp2fbga"))))
+        (base32 "1vl1yif3bsazcil6saghrpa4qsg47fnr7xnkjpqnp44b7ipww27r"))
+       (modules '((guix build utils)))
+       (snippet
+        ;; Symlink goes to not existing directory.
+        #~(for-each delete-file '("docs/testdata"
+                                  "docs/tutorials/example_code/testdata")))))
     (build-system pyproject-build-system)
     (arguments
      (list #:test-flags #~(list
-- 
2.41.0

[bug#66778] [PATCH 06/19] gnu: python-cdflib: Update to 1.2.2.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-cdflib): Update to 1.2.2.
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 9cdf264389..26de338752 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1730,7 +1730,7 @@ (define-public python-ccdproc
 (define-public python-cdflib
   (package
     (name "python-cdflib")
-    (version "1.2.1")
+    (version "1.2.2")
     (source
      (origin
        (method git-fetch)   ; no tests in pypi archive
@@ -1739,7 +1739,7 @@ (define-public python-cdflib
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0v73fl69pxbk52ilhj2593zmn3qhqy4hrrwby8m9z2sq3fd5xk0v"))))
+        (base32 "0ri3bqammmf0a9j9y6p4vym63ibgz8fsa0n46al9jv8iwfbs7bp7"))))
     (build-system pyproject-build-system)
     (arguments
      (list #:phases
-- 
2.41.0

[bug#66778] [PATCH 07/19] gnu: python-astroalign: Update to 2.5.0.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-astroalign): Update to 2.5.0.
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 26de338752..249ef80afb 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3997,7 +3997,7 @@ (define-public python-roman-datamodels
 (define-public python-astroalign
   (package
     (name "python-astroalign")
-    (version "2.4.2")
+    (version "2.5.0")
     (source
      (origin
        ;; There are no tests in the PyPI tarball.
@@ -4007,7 +4007,7 @@ (define-public python-astroalign
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0hly20a65540hr3l1lsd1i4d90a0vdrbwnn6zx3z8s89ha9lq3pb"))))
+        (base32 "0br1v2l48jx214a1bcdr8wz1wggcswcbz4cqv8d19fd46fc4qlhy"))))
     (build-system pyproject-build-system)
     (native-inputs
      (list python-astropy
-- 
2.41.0

[bug#66778] [PATCH 08/19] gnu: erfa: Update to 2.0.1.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (erfa): Update to 2.0.1.
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 249ef80afb..bc44f3cbab 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -649,7 +649,7 @@ (define-public qfits
 (define-public erfa
   (package
     (name "erfa")
-    (version "2.0.0")
+    (version "2.0.1")
     (source
      (origin
        (method git-fetch)
@@ -658,7 +658,7 @@ (define-public erfa
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0s9dpj0jdkqcg552f00jhd722czji4pffabmpys5pgi6djckq4f4"))))
+        (base32 "1hxjbcvdlq4871r17fphbaf3bd8dsjagp1rdb3j8v6kr4f1dil9n"))))
     (build-system gnu-build-system)
     (native-inputs
      (list automake autoconf libtool pkg-config))
-- 
2.41.0

[bug#66778] [PATCH 09/19] gnu: python-pyerfa: Update to 2.0.1.1.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-pyerfa): Update to 2.0.1.1.
---
 gnu/packages/astronomy.scm | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index bc44f3cbab..bd146afd3c 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3358,13 +3358,13 @@ (define-public python-jwst
 (define-public python-pyerfa
   (package
     (name "python-pyerfa")
-    (version "2.0.0.3")
+    (version "2.0.1.1")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "pyerfa" version))
        (sha256
-        (base32 "0f8zykzxjsiwv5ibdn5asla2ng2xl0xdkrcrrd61j31mb3xbnzyp"))
+        (base32 "0swsdkipnk73iflsa7qbaw89wahbnfyvplqaxwi0yfrxippp9b6v"))
        (modules '((guix build utils)))
        (snippet
         #~(begin
@@ -3375,6 +3375,7 @@ (define-public python-pyerfa
      (list
       ;; Disable only one failing test:
       ;; AttributeError: __warningregistry__
+      ;; See https://github.com/liberfa/pyerfa/issues/126
       #:test-flags #~(list "-k" "not test_errwarn_reporting")
       #:phases
       #~(modify-phases %standard-phases
-- 
2.41.0

[bug#66778] [PATCH 10/19] gnu: libxisf: Update to 0.2.10.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (libxisf): Update to 0.2.10.
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index bd146afd3c..51053b1d58 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2892,7 +2892,7 @@ (define-public libpasastro
 (define-public libxisf
   (package
     (name "libxisf")
-    (version "0.2.9")
+    (version "0.2.10")
     (source
      (origin
        (method git-fetch)
@@ -2901,7 +2901,7 @@ (define-public libxisf
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "02cxv86h0ng4kmvyjkf7cr2ak2i3vpf0q0ik7jg4nmqjsidcs796"))))
+        (base32 "0q5qipn8887yhrk9pmi4fksxxmqas3w2aw2p194yhzkjapxk2k9h"))))
     (build-system cmake-build-system)
     (arguments
      (list #:configure-flags #~(list "-DUSE_BUNDLED_LIBS=OFF")))
-- 
2.41.0

[bug#66778] [PATCH 11/19] gnu: python-astropy: Update to 5.3.4.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-astropy): Update to 5.3.4.
[arguments]{phases}: Disable one failing test, reported upstream.
---
 gnu/packages/astronomy.scm | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 51053b1d58..937da94b03 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1412,13 +1412,13 @@ (define-public celestia-gtk
 (define-public python-astropy
   (package
     (name "python-astropy")
-    (version "5.3.3")
+    (version "5.3.4")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "astropy" version))
        (sha256
-        (base32 "1fwk7x4q1hgdf9m8q613c6q7045sam1g934vgqv588ksbngxyc03"))
+        (base32 "1n7iwvjari4xv37094cpiapmjhhm57b04hi4r40wqb5czbigg46l"))
        (modules '((guix build utils)))
        (snippet
         '(begin
@@ -1473,7 +1473,9 @@ (define-public python-astropy
                              "not remote_data"
                              ;; XXX: Check why this tests failing.
                              " and not test_ignore_sigint"
-                             " and not test_parquet_filter"))))))))
+                             " and not test_parquet_filter"
+                             ;; See https://github.com/astropy/astropy/issues/15537
+                             " and not test_pvstar"))))))))
     (native-inputs
      (list pkg-config
            python-colorlog
-- 
2.41.0

[bug#66778] [PATCH 12/19] gnu: python-cdflib: Update to 1.2.3.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-cdflib): Update to 1.2.3.
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 937da94b03..f19c5dfbdd 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1732,7 +1732,7 @@ (define-public python-ccdproc
 (define-public python-cdflib
   (package
     (name "python-cdflib")
-    (version "1.2.2")
+    (version "1.2.3")
     (source
      (origin
        (method git-fetch)   ; no tests in pypi archive
@@ -1741,7 +1741,7 @@ (define-public python-cdflib
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0ri3bqammmf0a9j9y6p4vym63ibgz8fsa0n46al9jv8iwfbs7bp7"))))
+        (base32 "0vpgcbc9pmx0qqfia1frnwq3jkgfp8y3ikqdnzs5bs1sr13p9p3w"))))
     (build-system pyproject-build-system)
     (arguments
      (list #:phases
-- 
2.41.0

[bug#66778] [PATCH 13/19] gnu: python-crds: Update to 11.17.7.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-crds): Update to 11.17.7.
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index f19c5dfbdd..b9bff73a35 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1781,13 +1781,13 @@ (define-public python-cdflib
 (define-public python-crds
   (package
     (name "python-crds")
-    (version "11.17.6")
+    (version "11.17.7")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "crds" version))
               (sha256
                (base32
-                "1sbfl45rx21g622vm8baqv0ydcdixf1jdjgydn07sxl7kn15fa4g"))))
+                "10cxhb1xss21p992bfd5jm8bix1n12h0fd8m5sp6bcsgn6zs94v0"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.41.0

[bug#66778] [PATCH 14/19] gnu: python-ephem: Update to 4.1.5.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-ephem): Update to 4.1.5.
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index b9bff73a35..e18d86f191 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1942,13 +1942,13 @@ (define-public python-drizzle
 (define-public python-ephem
   (package
     (name "python-ephem")
-    (version "4.1.4")
+    (version "4.1.5")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "ephem" version))
               (sha256
                (base32
-                "0q67z79lgwdylxagbsjm42xvsmk5jmgvghy36m2n5lb2446rz9bk"))))
+                "0ainqbnvw320pc61q5b6ad6f2mhn1pvrlnq489cwfx0m82mahr0c"))))
     (build-system python-build-system)
     (native-inputs (list tzdata))
     (home-page "https://rhodesmill.org/pyephem/")
-- 
2.41.0

[bug#66778] [PATCH 15/19] gnu: python-jwst: Update to 1.12.5.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-jwst): Update to 1.12.5.
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index e18d86f191..c5a6f59e87 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3293,13 +3293,13 @@ (define-public python-jplephem
 (define-public python-jwst
   (package
     (name "python-jwst")
-    (version "1.12.3")
+    (version "1.12.5")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "jwst" version))
               (sha256
                (base32
-                "0bw7i0pmpdgk2zf47d57g45hm3yb4wbrf1p19z9vg555qv4f4kr5"))))
+                "0blrl00lz1snhcnr7j59nh05rnpqxdnfp8hhgagkr50h85q4smrn"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.41.0

[bug#66778] [PATCH 16/19] gnu: python-pytest-remotedata: Update to 0.4.1.

[Sharlatan Hellseher]

* gnu/packages/python-check (python-pytest-remotedata): Update to 0.4.1.
---
 gnu/packages/python-check.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index 0ccae07093..ef1db87102 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -735,13 +735,13 @@ (define-public python-pytest-openfiles
 (define-public python-pytest-remotedata
   (package
     (name "python-pytest-remotedata")
-    (version "0.4.0")
+    (version "0.4.1")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "pytest-remotedata" version))
        (sha256
-        (base32 "1j5106j331cfdyfcwzrbs3yby84mq1b0kddfysq12z2dwdcca8dy"))))
+        (base32 "0ndvnj9zghfj17haphrygiri9iy38wb8lwq1xdkfvlfd73v8ph05"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.41.0

[bug#66778] [PATCH 17/19] gnu: python-pytest-doctestplus: Update to 1.0.0.

[Sharlatan Hellseher]

* gnu/packages/python-check (python-pytest-doctestplus): Update to 1.0.0.
---
 gnu/packages/python-check.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index ef1db87102..9dafae0d67 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -568,13 +568,13 @@ (define-public python-pytest-arraydiff
 (define-public python-pytest-doctestplus
   (package
     (name "python-pytest-doctestplus")
-    (version "0.12.1")
+    (version "1.0.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "pytest-doctestplus" version))
        (sha256
-        (base32 "10ciqylgziihxwxryxvxgmkqgws51pqcarn0gbh1d4cxx55rx5vs"))))
+        (base32 "17ylfnrcvvp6sd13bfj40jl40paqmjsbywysszb3xqgdr86l8l7n"))))
     (build-system pyproject-build-system)
     (arguments
      (list #:test-flags
-- 
2.41.0

[bug#66778] [PATCH 18/19] gnu: python-pytest-astropy: Update to 0.11.0.

[Sharlatan Hellseher]

* gnu/packages/python-check (python-pytest-astropy): Update to 0.11.0.
---
 gnu/packages/python-check.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index 9dafae0d67..4e955d2528 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -510,13 +510,13 @@ (define-public python-pytest-astropy-header
 (define-public python-pytest-astropy
   (package
     (name "python-pytest-astropy")
-    (version "0.10.0")
+    (version "0.11.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "pytest-astropy" version))
        (sha256
-        (base32 "04g2rh261s3s6ym8mwi4iv2a6anbgwvwzcvkyilfck6yxrncdqw5"))))
+        (base32 "1d9rcxnc57rjp96xag1gq725pwl11b3k5hdaz7c3w5lixncsmbjf"))))
     (build-system python-build-system)
     (arguments (list #:tests? #f)) ; there are no tests
     (native-inputs
-- 
2.41.0

[bug#66778] [PATCH 19/19] gnu: python-asdf: Update to 3.0.0.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-asdf-3.0): New variable, migrated
from python-asdf.
[arguments]: Move it from here ...
[native-inputs]: Remove python-astronomy, python-pytest-openfiles.
[propagated-inputs]: Add python-attrs. Remove
python-importlib-resources, python-jsonschema.

(python-asdf-2.15): New variable. Inherited from python-asdf-3.0.
[arguments]: ... to here.

(python-asdf): Set it to use python-asdf-2.15 as 3.0.0 includes some
breaking changes which may not testes in dependent projects.
---
 gnu/packages/astronomy.scm | 48 ++++++++++++++++++++++++++------------
 1 file changed, 33 insertions(+), 15 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index c5a6f59e87..ea69ad6542 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3598,32 +3598,23 @@ (define-public python-tweakwcs
 @code{FITS WCS} and @code{JWST gWCS} are supported.")
     (license license:bsd-3)))
 
-(define-public python-asdf
+(define-public python-asdf-3.0
   (package
     (name "python-asdf")
-    (version "2.15.0")
+    (version "3.0.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "asdf" version))
        (sha256
-        (base32 "11s56797l5330kkhppkyz0bsvms016knmyswj4gx91zrxf8iqvv8"))))
+        (base32 "1a6lf75q9w8fsyq3hn6a7fyldkkyqxddlq21fwdfjwij40dzh3s8"))))
     (build-system pyproject-build-system)
-    (arguments
-     (list #:test-flags
-           #~(list "-k" (string-append
-                         "not test_overwrite"
-                         " and not test_tagging_scalars"
-                         " and not test_info_command"
-                         " and not test_array_inline_threshold_recursive"))))
     (native-inputs
-     (list python-astropy
-           python-fsspec
+     (list python-fsspec
            python-packaging
            python-psutil
            python-pytest
            python-pytest-doctestplus
-           python-pytest-openfiles
            python-pytest-remotedata
            python-semantic-version
            python-setuptools-scm))
@@ -3631,10 +3622,9 @@ (define-public python-asdf
      (list python-asdf-standard
            python-asdf-transform-schemas
            python-asdf-unit-schemas
+           python-attrs ;; for vendorized jsonschema
            python-importlib-metadata
-           python-importlib-resources
            python-jmespath
-           python-jsonschema
            python-lz4
            python-numpy
            python-pyyaml))
@@ -3646,6 +3636,34 @@ (define-public python-asdf
 implementation of the ASDF Standard.")
     (license license:bsd-3)))
 
+(define-public python-asdf-2.15
+  (package
+    (inherit python-asdf-3.0)
+    (version "2.15.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "asdf" version))
+       (sha256
+        (base32 "11s56797l5330kkhppkyz0bsvms016knmyswj4gx91zrxf8iqvv8"))))
+    (arguments
+     (list #:test-flags
+           #~(list "-k" (string-append
+                         "not test_overwrite"
+                         " and not test_tagging_scalars"
+                         " and not test_info_command"
+                         " and not test_array_inline_threshold_recursive"))))
+    (native-inputs
+     (modify-inputs (package-native-inputs python-asdf-3.0)
+       (prepend python-astropy python-pytest-openfiles)))
+    (propagated-inputs
+     (modify-inputs (package-propagated-inputs python-asdf-3.0)
+       (prepend python-jsonschema python-importlib-resources)))))
+
+(define-public python-asdf
+  ;; Default version of ASDF..
+  python-asdf-2.15)
+
 (define-public python-asdf-standard
   (package
     (name "python-asdf-standard")
-- 
2.41.0

bug#66778: [PATCH 00/19] gnu: Astronomy 2023/10 updates.

[Christopher Baines]

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Sharlatan Hellseher <sharlatanus@gmail.com> writes:

> Hi Guix,
>
> Please review October's patch series updating and improving packages related
> to (gnu packages astronomy).

...

> Sharlatan Hellseher (19):
>   gnu: glnemo2: Fix home-page.
>   gnu: imppg: Use standard configure phase.
>   gnu: python-spherical-geometry: Simplify package.
>   gnu: python-spherical-geometry: Enable tests.
>   gnu: python-pynbody: Update to 1.4.1.
>   gnu: python-cdflib: Update to 1.2.2.
>   gnu: python-astroalign: Update to 2.5.0.
>   gnu: erfa: Update to 2.0.1.
>   gnu: python-pyerfa: Update to 2.0.1.1.
>   gnu: libxisf: Update to 0.2.10.
>   gnu: python-astropy: Update to 5.3.4.
>   gnu: python-cdflib: Update to 1.2.3.
>   gnu: python-crds: Update to 11.17.7.
>   gnu: python-ephem: Update to 4.1.5.
>   gnu: python-jwst: Update to 1.12.5.
>   gnu: python-pytest-remotedata: Update to 0.4.1.
>   gnu: python-pytest-doctestplus: Update to 1.0.0.
>   gnu: python-pytest-astropy: Update to 0.11.0.
>   gnu: python-asdf: Update to 3.0.0.
>
>  gnu/packages/astronomy.scm    | 142 +++++++++++++++++++---------------
>  gnu/packages/python-check.scm |  12 +--
>  2 files changed, 85 insertions(+), 69 deletions(-)
>
>
> base-commit: 50f514762bf35b029eb89518c5ab5b3d1bf27f48

These look good to me, I've pushed them to master as
7995a474eab286a0eb05b065716ecd026a681d56.

Thanks,

Chris

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