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Change-Id: Ia01ba3be7424306674b9c9b2904f1f0cfa66d818 --- gnu/packages/bioinformatics.scm | 48 +++++++++++++++++++++++++++++++++ 1 file changed, 48 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index e2632a5aa4..8ffc46d86d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -752,6 +752,54 @@ (define-public r-anndatar @code{SingleCellExperiment} and Seurat objects.") (license license:expat)))) +(define-public r-anpan + (let ((commit "286b88dcf5e9e963a595482139aade154ee1dc86") + (revision "1")) + (package + (name "r-anpan") + (version (git-version "0.3.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/biobakery/anpan") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "10nw5v69gn4pxb4g5gd8nh9r1ywd6yczapl3dpdfms0434wcmkxm")))) + (properties `((upstream-name . "anpan"))) + (build-system r-build-system) + (propagated-inputs (list r-ape + r-cmdstanr + r-data-table + r-dplyr + r-fastglm + r-furrr + r-future + r-ggdendro + r-ggnewscale + r-ggplot2 + r-loo + r-mass + r-patchwork + r-phylogram + r-posterior + r-progressr + r-purrr + r-r-utils + r-stringr + r-tibble + r-tidyselect)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/biobakery/anpan") + (synopsis "Quantifying microbial strain-host associations") + (description + "The goal of anpan is to consolidate statistical methods for strain analysis. +This includes automated filtering of metagenomic functional profiles, testing genetic +elements for association with outcomes, phylogenetic association testing, and +pathway-level random effects models.") + (license license:expat)))) + (define-public r-bedtorch (let ((commit "f5ff4f83b94f59eac660333c64e4b2f296b35cea") (revision "1")) base-commit: c551e406a75273583ae3fef92f32468f905cc07f prerequisite-patch-id: 70095eccc2035390725bf119749d138d609d2b83 prerequisite-patch-id: 016f9a35b1da6b5916599f4cc6616fc9738c2b46 -- 2.34.1