From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <66966@debbugs.gnu.org>
Cc: Ricardo Wurmus <rekado@elephly.net>
Subject: [bug#66966] [PATCH 07/13] gnu: Add r-bayesknockdown.
Date: Mon, 6 Nov 2023 12:06:43 +0100 [thread overview]
Message-ID: <b8413d252f3af4bf1a41fddfa01c9efd35b7a947.1699268809.git.madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <302230715db60dbcab23676e1c67c53a567884e2.1699268809.git.madalinionel.patrascu@mdc-berlin.de>
* gnu/packages/bioconductor.scm (r-bayesknockdown): New variable.
Change-Id: Icceffc04071efaa8a8b79144005fa7745abc7e1a
---
gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 986227ec38..12d9e1b077 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -22441,6 +22441,30 @@ (define-public r-basilisk
Python environments in a single R session.")
(license license:gpl3)))
+(define-public r-bayesknockdown
+ (package
+ (name "r-bayesknockdown")
+ (version "1.28.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "BayesKnockdown" version))
+ (sha256
+ (base32 "1argd4gfld2yb0vvpgb5k7m6agmi58712f6g5dj4gnb7kg4rp1l8"))))
+ (properties `((upstream-name . "BayesKnockdown")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-biobase))
+ (home-page "https://bioconductor.org/packages/BayesKnockdown")
+ (synopsis "Posterior probabilities for edges from knockdown data")
+ (description
+ "This package provides a simple, fast Bayesian method for computing posterior
+probabilities for relationships between a single predictor variable and multiple
+potential outcome variables, incorporating prior probabilities of relationships.
+In the context of knockdown experiments, the predictor variable is the
+knocked-down gene, while the other genes are potential targets. Can also be
+used for differential expression/2-class data.")
+ (license license:gpl3)))
+
(define-public r-biocthis
(package
(name "r-biocthis")
--
2.41.0
next prev parent reply other threads:[~2023-11-06 11:34 UTC|newest]
Thread overview: 15+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-11-06 10:59 [bug#66966] [Patch] gnu: Add r-bcrank, r-bbcanalyzer, r-baynorm, r-bb, r-bayesspace, r-rcppdist, r-bayesknockdown, r-basicstarrseq, r-basics, r-basic4cseq, r-bsgenome-ecoli-ncbi-20080805, r-bags and r-breastcancervdx Mădălin Ionel Patrașcu
2023-11-06 11:06 ` [bug#66966] [PATCH 01/13] gnu: Add r-breastcancervdx Mădălin Ionel Patrașcu
2023-11-06 11:06 ` [bug#66966] [PATCH 02/13] gnu: Add r-bags Mădălin Ionel Patrașcu
2023-11-06 11:06 ` [bug#66966] [PATCH 03/13] gnu: Add r-bsgenome-ecoli-ncbi-20080805 Mădălin Ionel Patrașcu
2023-11-06 11:06 ` [bug#66966] [PATCH 04/13] gnu: Add r-basic4cseq Mădălin Ionel Patrașcu
2023-11-06 11:06 ` [bug#66966] [PATCH 05/13] gnu: Add r-basics Mădălin Ionel Patrașcu
2023-11-06 11:06 ` [bug#66966] [PATCH 06/13] gnu: Add r-basicstarrseq Mădălin Ionel Patrașcu
2023-11-06 11:06 ` Mădălin Ionel Patrașcu [this message]
2023-11-06 11:06 ` [bug#66966] [PATCH 08/13] gnu: Add r-rcppdist Mădălin Ionel Patrașcu
2023-11-06 11:06 ` [bug#66966] [PATCH 09/13] gnu: Add r-bayesspace Mădălin Ionel Patrașcu
2023-11-06 11:06 ` [bug#66966] [PATCH 10/13] gnu: Add r-bb Mădălin Ionel Patrașcu
2023-11-06 11:06 ` [bug#66966] [PATCH 11/13] gnu: Add r-baynorm Mădălin Ionel Patrașcu
2023-11-06 11:06 ` [bug#66966] [PATCH 12/13] gnu: Add r-bbcanalyzer Mădălin Ionel Patrașcu
2023-11-06 11:06 ` [bug#66966] [PATCH 13/13] gnu: Add r-bcrank Mădălin Ionel Patrașcu
2023-11-13 14:09 ` bug#66966: [PATCH 01/13] gnu: Add r-breastcancervdx Ricardo Wurmus
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
List information: https://guix.gnu.org/
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=b8413d252f3af4bf1a41fddfa01c9efd35b7a947.1699268809.git.madalinionel.patrascu@mdc-berlin.de \
--to=madalinionel.patrascu@mdc-berlin.de \
--cc=66966@debbugs.gnu.org \
--cc=rekado@elephly.net \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
Code repositories for project(s) associated with this public inbox
https://git.savannah.gnu.org/cgit/guix.git
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).