* bug#70488: [PATCH 00/47] Astronomy 2024/02 updates.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
@ 2024-04-20 23:19 ` Sharlatan Hellseher
2024-04-20 23:21 ` [bug#70489] [PATCH 01/47] gnu: cfitsio: Update to 4.4.0 Sharlatan Hellseher
` (47 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:19 UTC (permalink / raw)
To: 70488-done
[-- Attachment #1: Type: text/plain, Size: 39 bytes --]
Closing, wrong subject name.
--
Oleg
[-- Attachment #2: signature.asc --]
[-- Type: application/pgp-signature, Size: 832 bytes --]
^ permalink raw reply [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 01/47] gnu: cfitsio: Update to 4.4.0.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
2024-04-20 23:19 ` bug#70488: " Sharlatan Hellseher
@ 2024-04-20 23:21 ` Sharlatan Hellseher
2024-04-20 23:21 ` [bug#70489] [PATCH 02/47] gnu: stellarium: Update to 24.1 Sharlatan Hellseher
` (46 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:21 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (cfitsio): Update to 4.4.0.
Change-Id: Iac79d04b1cfb59038578939266bc4b948fb3c908
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 6cd0bb7348..0aa2efaabc 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -451,7 +451,7 @@ (define-public ccfits
(define-public cfitsio
(package
(name "cfitsio")
- (version "4.3.1")
+ (version "4.4.0")
(source
(origin
(method url-fetch)
@@ -459,7 +459,7 @@ (define-public cfitsio
"https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/"
"cfitsio-" version ".tar.gz"))
(sha256
- (base32 "1gk2a07ypmc8rcngakcarprznq7hi3xr9szfv3hy2yv80ppci9s7"))))
+ (base32 "1abb4ky6pjyi9f9ly8qjmkb5h25d5xxqlrxrgjg86q77bbwhr44m"))))
(build-system gnu-build-system)
(arguments
(list
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 02/47] gnu: stellarium: Update to 24.1.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
2024-04-20 23:19 ` bug#70488: " Sharlatan Hellseher
2024-04-20 23:21 ` [bug#70489] [PATCH 01/47] gnu: cfitsio: Update to 4.4.0 Sharlatan Hellseher
@ 2024-04-20 23:21 ` Sharlatan Hellseher
2024-04-20 23:21 ` [bug#70489] [PATCH 03/47] gnu: indi-2.0: Update to 2.0.7 Sharlatan Hellseher
` (45 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:21 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (stellarium): Update to 24.1.
Change-Id: I53dea0e03a3b7c4d78b4946a2bbc9a13f9fbec6f
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 0aa2efaabc..d82966932d 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1345,7 +1345,7 @@ (define-public stackistry
(define-public stellarium
(package
(name "stellarium")
- (version "23.4")
+ (version "24.1")
(source
(origin
(method git-fetch)
@@ -1354,7 +1354,7 @@ (define-public stellarium
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "11l3lql3cxj7s7q7n74qd4rhbjy374b4c0lpm0dr8s85mfrq6fmc"))))
+ (base32 "15r8vg1xb4q8vwy10dfs4543bg6r3463sgrpkqk6fpxx46d8axxp"))))
(build-system cmake-build-system)
;; TODO: Complete documentation build and split into dedicated outputs.
(arguments
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 03/47] gnu: indi-2.0: Update to 2.0.7.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (2 preceding siblings ...)
2024-04-20 23:21 ` [bug#70489] [PATCH 02/47] gnu: stellarium: Update to 24.1 Sharlatan Hellseher
@ 2024-04-20 23:21 ` Sharlatan Hellseher
2024-04-20 23:21 ` [bug#70489] [PATCH 04/47] gnu: libxisf: Update to 0.2.12 Sharlatan Hellseher
` (44 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:21 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (indi-2.0): Update to 2.0.7.
Change-Id: Ia134449cc18a0c70dcba962b0ea51e2341d34e98
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index d82966932d..d8af86b449 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3804,7 +3804,7 @@ (define-public imppg
(define-public indi-2.0
(package
(name "indi")
- (version "2.0.6")
+ (version "2.0.7")
(source
(origin
(method git-fetch)
@@ -3813,7 +3813,7 @@ (define-public indi-2.0
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "0j1yr8wz6q6xi4dskv3yyhm0valsyfhcw1n8xpfgzbzbdzc8biyw"))))
+ (base32 "0w3494by88g0sz92adgvy75g7f1609ilsblink9z37n02v83dfxi"))))
(build-system cmake-build-system)
(arguments
;; TODO: fix failing tests on aarch64-system.
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 04/47] gnu: libxisf: Update to 0.2.12.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (3 preceding siblings ...)
2024-04-20 23:21 ` [bug#70489] [PATCH 03/47] gnu: indi-2.0: Update to 2.0.7 Sharlatan Hellseher
@ 2024-04-20 23:21 ` Sharlatan Hellseher
2024-04-20 23:21 ` [bug#70489] [PATCH 05/47] gnu: python-pytest-socket: Update to 0.7.0 Sharlatan Hellseher
` (43 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:21 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (libxisf): Update to 0.2.12.
Change-Id: Ide88155581b317cdb74683f49d2ec8b87c6bc5de
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index d8af86b449..917b838e7a 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3557,7 +3557,7 @@ (define-public libpasastro
(define-public libxisf
(package
(name "libxisf")
- (version "0.2.11")
+ (version "0.2.12")
(source
(origin
(method git-fetch)
@@ -3566,7 +3566,7 @@ (define-public libxisf
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "02lnlsdg7f6pbcfk9amzh2k42wsb19d97yp2jq122lzivx9inwn1"))))
+ (base32 "1bvf3x0xdipkg28c75j6jav3b2llbqvfa6lkwiacxxlzmj0226s2"))))
(build-system cmake-build-system)
(arguments
(list #:configure-flags #~(list "-DUSE_BUNDLED_LIBS=OFF")))
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 05/47] gnu: python-pytest-socket: Update to 0.7.0.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (4 preceding siblings ...)
2024-04-20 23:21 ` [bug#70489] [PATCH 04/47] gnu: libxisf: Update to 0.2.12 Sharlatan Hellseher
@ 2024-04-20 23:21 ` Sharlatan Hellseher
2024-04-20 23:21 ` [bug#70489] [PATCH 06/47] gnu: parfive: Update to 2.1.0 Sharlatan Hellseher
` (42 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:21 UTC (permalink / raw)
To: 70489
Cc: Sharlatan Hellseher, Lars-Dominik Braun, Marius Bakke,
Munyoki Kilyungi, Sharlatan Hellseher, Tanguy Le Carrour, jgart
* gnu/packages/python-check.scm (python-pytest-socket): Update to 0.7.0.
Change-Id: I879064eba2f4d93d2e2b519ebdf613685d5b5df9
---
gnu/packages/python-check.scm | 31 +++++++++++++++++++++++--------
1 file changed, 23 insertions(+), 8 deletions(-)
diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index b39709d960..777791cb6c 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -420,13 +420,17 @@ (define-public python-vcrpy
(define-public python-pytest-socket
(package
(name "python-pytest-socket")
- (version "0.5.1")
- (source (origin
- (method url-fetch)
- (uri (pypi-uri "pytest-socket" version))
- (sha256
- (base32
- "1dkr86nxkxc0ka3rdnpmk335m8gl1zh1sy8i7w4w1jsidbf82jvw"))))
+ (version "0.7.0")
+ (source
+ (origin
+ ;; There are no tests in the PyPI tarball.
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/miketheman/pytest-socket")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "1m6s07gvljq82hiajzy1v123kpkciziiqdjqfnas169rmzg0bmnp"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -440,7 +444,18 @@ (define-public python-pytest-socket
" and not test_httpx_fails"
" and not test_disabled_urllib_fails"
" and not test_urllib_succeeds_by_default"
- " and not test_enabled_urllib_succeeds"))))
+ " and not test_enabled_urllib_succeeds"
+ " and not test_single_cli_arg_connect_disabled_hostname_resolved"))
+ #:phases
+ #~(modify-phases %standard-phases
+ ;; See <https://github.com/miketheman/pytest-socket/issues/308>
+ (add-after 'unpack 'fix-tests
+ (lambda _
+ (substitute* (list "tests/test_async.py"
+ "tests/test_socket.py"
+ "tests/test_precedence.py")
+ (("from tests.common import assert_socket_blocked")
+ "from common import assert_socket_blocked")))))))
(native-inputs (list python-httpx
python-poetry-core
python-pypa-build
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 06/47] gnu: parfive: Update to 2.1.0.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (5 preceding siblings ...)
2024-04-20 23:21 ` [bug#70489] [PATCH 05/47] gnu: python-pytest-socket: Update to 0.7.0 Sharlatan Hellseher
@ 2024-04-20 23:21 ` Sharlatan Hellseher
2024-04-20 23:21 ` [bug#70489] [PATCH 07/47] gnu: python-exif-read: Update to 3.0.0 Sharlatan Hellseher
` (41 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:21 UTC (permalink / raw)
To: 70489
Cc: Sharlatan Hellseher, Lars-Dominik Braun, Marius Bakke,
Munyoki Kilyungi, Sharlatan Hellseher, Tanguy Le Carrour, jgart
* gnu/packages/python-web.scm (parfive): Update to 2.1.0.
Change-Id: I6207150e012c03943d4553854123831d1bba3e55
---
gnu/packages/python-web.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 5a532f8460..fb6abb9d80 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -1378,13 +1378,13 @@ (define-public httpie
(define-public parfive
(package
(name "parfive")
- (version "2.0.2")
+ (version "2.1.0")
(source (origin
(method url-fetch)
(uri (pypi-uri "parfive" version))
(sha256
(base32
- "0pf8rzfwxpkn84xzb4v8m1fy3k7kjlh8f9ln4y5xqlnbqpwi30lh"))))
+ "13nw2y7wjzj6w049av6ff4d0zxgbhkrgck0xyh676c114hcv8v6d"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 07/47] gnu: python-exif-read: Update to 3.0.0.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (6 preceding siblings ...)
2024-04-20 23:21 ` [bug#70489] [PATCH 06/47] gnu: parfive: Update to 2.1.0 Sharlatan Hellseher
@ 2024-04-20 23:21 ` Sharlatan Hellseher
2024-04-20 23:21 ` [bug#70489] [PATCH 08/47] gnu: Add python-pysiaf Sharlatan Hellseher
` (40 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:21 UTC (permalink / raw)
To: 70489
Cc: Sharlatan Hellseher, Lars-Dominik Braun, Marius Bakke,
Munyoki Kilyungi, Sharlatan Hellseher, Tanguy Le Carrour, jgart
* gnu/packages/python-xyz.scm (python-exif-read): Update to 3.0.0.
Change-Id: I19e0a19041aa943a9f3ecf262077328d52ef4d1d
---
gnu/packages/python-xyz.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index bac90b1e07..6011b4137f 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -5181,13 +5181,13 @@ (define-public python-pyrsistent
(define-public python-exif-read
(package
(name "python-exif-read")
- (version "2.1.2")
+ (version "3.0.0")
(source (origin
(method url-fetch)
(uri (pypi-uri "ExifRead" version))
(sha256
(base32
- "1b90jf6m9vxh9nanhpyvqdq7hmfx5iggw1l8kq10jrs6xgr49qkr"))))
+ "191c7sa0rca8wkspfq8nlfa6davh743mqkzrcayz5gcx2rja7i8a"))))
(build-system python-build-system)
(arguments `(#:tests? #f)) ; no tests
(home-page "https://github.com/ianare/exif-py")
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 08/47] gnu: Add python-pysiaf.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (7 preceding siblings ...)
2024-04-20 23:21 ` [bug#70489] [PATCH 07/47] gnu: python-exif-read: Update to 3.0.0 Sharlatan Hellseher
@ 2024-04-20 23:21 ` Sharlatan Hellseher
2024-04-20 23:21 ` [bug#70489] [PATCH 09/47] gnu: Add python-supersmoother Sharlatan Hellseher
` (39 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:21 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-pysiaf): New variable.
Change-Id: Ide732d666bccad885ed3e8c78d62df7e74524b9a
---
gnu/packages/astronomy.scm | 39 ++++++++++++++++++++++++++++++++++++++
1 file changed, 39 insertions(+)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 917b838e7a..55561c98e7 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4209,6 +4209,45 @@ (define-public python-pyregion
@end itemize")
(license license:expat)))
+(define-public python-pysiaf
+ (package
+ (name "python-pysiaf")
+ (version "0.22.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "pysiaf" version))
+ (sha256
+ (base32 "08wb98k9k4f04455da5ns9rif8pl9r3ih537w1yj393hkjjiyzfz"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags
+ #~(list "-n" "auto"
+ ;; Disable 2 failing tests, see
+ ;; <https://github.com/spacetelescope/pysiaf/issues/338>
+ "-k" (string-append "not test_write_jwst_siaf_xlsx"
+ " and not test_write_jwst_siaf_xml" ))))
+ (propagated-inputs
+ (list python-astropy
+ python-lxml
+ python-matplotlib
+ python-numpy
+ python-numpydoc
+ python-openpyxl
+ python-requests
+ python-scipy))
+ (native-inputs
+ (list python-pytest python-pytest-xdist))
+ (home-page "https://pysiaf.readthedocs.io/")
+ (synopsis "Handling SIAF for space telescopes")
+ (description
+ "@code{pysiaf} is a python package to access, interpret, maintain, and
+generate @acronym{Handling of Science Instrument Aperture Files, SIAF}, in
+particular for JWST. Tools for applying the frame transformations, plotting,
+comparison, and validation are provided.")
+ (license license:bsd-3)))
+
(define-public python-pysynphot
;; XXX: 2.0.0 was released in 2021 there are a lot of changes since that
;; time and it failed to build with python-astropy 6.0.0, use the latest
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 09/47] gnu: Add python-supersmoother.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (8 preceding siblings ...)
2024-04-20 23:21 ` [bug#70489] [PATCH 08/47] gnu: Add python-pysiaf Sharlatan Hellseher
@ 2024-04-20 23:21 ` Sharlatan Hellseher
2024-04-20 23:21 ` [bug#70489] [PATCH 10/47] gnu: python-asdf: Update to 3.2.0 Sharlatan Hellseher
` (38 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:21 UTC (permalink / raw)
To: 70489
Cc: Sharlatan Hellseher, Lars-Dominik Braun, Marius Bakke,
Munyoki Kilyungi, Sharlatan Hellseher, Tanguy Le Carrour, jgart
* gnu/packages/python-science.scm (python-supersmoother): New variable.
Change-Id: I8fb43d746757014e3b773c07458b777b893adb4a
---
gnu/packages/python-science.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 862e101f6a..b39dc5bc5b 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -2449,6 +2449,31 @@ (define-public python-simple-pid
proportional-integral-derivative} controller.")
(license license:expat)))
+(define-public python-supersmoother
+ (package
+ (name "python-supersmoother")
+ (version "0.4")
+ (source
+ (origin
+ (method git-fetch) ; no package in PyPI
+ (uri (git-reference
+ (url "https://github.com/jakevdp/supersmoother")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "1lkj8l2mpki6x2pxcwlrplx63lhi8h9v2rzxgjfb0cppsfr8m1wp"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs (list python-numpy))
+ (native-inputs (list python-scipy))
+ (home-page "http://github.com/jakevdp/supersmoother")
+ (synopsis "Python implementation of Friedman's Supersmoother")
+ (description
+ "This package provides an efficient implementation of
+@url{https://www.slac.stanford.edu/pubs/slacpubs/3250/slac-pub-3477.pdf,
+Friedman's SuperSmoother} based in Python. It makes use of numpy for fast
+numerical computation.")
+ (license license:bsd-2)))
+
(define-public python-opt-einsum
(package
(name "python-opt-einsum")
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 10/47] gnu: python-asdf: Update to 3.2.0.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (9 preceding siblings ...)
2024-04-20 23:21 ` [bug#70489] [PATCH 09/47] gnu: Add python-supersmoother Sharlatan Hellseher
@ 2024-04-20 23:21 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 11/47] gnu: python-asdf-astropy: Update to 0.6.1 Sharlatan Hellseher
` (37 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:21 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-asdf): Update to 3.2.0.
[arguments] <#:phases>: Replace 'fix-tests-setup with
'patch-pyprojectct-toml phase and add one more substitution rule.
[propagated-inputs]: Remove python-asdf-unit-schemas.
Change-Id: I9e7a0282ed0a9eb82a20988762792e10ae33496b
---
gnu/packages/astronomy.scm | 16 +++++++++-------
1 file changed, 9 insertions(+), 7 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 55561c98e7..b06638c49c 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4418,13 +4418,13 @@ (define-public python-tweakwcs
(define-public python-asdf
(package
(name "python-asdf")
- (version "3.1.0")
+ (version "3.2.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "asdf" version))
(sha256
- (base32 "0fa6y3gmqc0y3nz0h68vq3a84pvx6gc5zp33wg8a4n9b4kipm464"))))
+ (base32 "1wj556g15gwp6ir5hg083l15sifdsf23giqkx0jbn4lgdwjffbgr"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -4432,12 +4432,15 @@ (define-public python-asdf
#~(list "-n" "auto" "-p" "no:legacypath")
#:phases
#~(modify-phases %standard-phases
- ;; ImportError: Error importing plugin " no:legacypath": No module
- ;; named ' no:legacypath'
- (add-before 'check 'fix-tests-setup
+ (add-after 'unpack 'patch-pypojrect-toml
(lambda _
(substitute* "pyproject.toml"
- ((".*:legacypath.*") "")))))))
+ ;; ImportError: Error importing plugin " no:legacypath": No
+ ;; module named ' no:legacypath'
+ ((".*:legacypath.*") "")
+ ;; TypeError: Configuration.__init__() got an unexpected
+ ;; keyword argument 'version_file'
+ (("version_file = \"asdf/_version.py\"") "")))))))
(native-inputs
(list python-fsspec
python-packaging
@@ -4451,7 +4454,6 @@ (define-public python-asdf
(propagated-inputs
(list python-asdf-standard
python-asdf-transform-schemas
- python-asdf-unit-schemas
python-attrs ;; for vendorized jsonschema
python-importlib-metadata
python-jmespath
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 11/47] gnu: python-asdf-astropy: Update to 0.6.1.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (10 preceding siblings ...)
2024-04-20 23:21 ` [bug#70489] [PATCH 10/47] gnu: python-asdf: Update to 3.2.0 Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 12/47] gnu: python-astropy-iers-data: Update to 0.2024.4.15.2.45.49 Sharlatan Hellseher
` (36 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-asdf-astropy): Update to 0.6.1.
Change-Id: I06f00006fcba1d0e385e6bc3f82f7a85403d94a9
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index b06638c49c..749c581571 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4727,13 +4727,13 @@ (define-public python-asdf-zarr
(define-public python-asdf-astropy
(package
(name "python-asdf-astropy")
- (version "0.6.0")
+ (version "0.6.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "asdf-astropy" version))
(sha256
- (base32 "0cxwknkjkgiavwmsz3vzk88c3spdi1cj4kwp62hgj92g2mh5k0zh"))))
+ (base32 "1ipjpjiirycj2npicbp39ka7db61vx45j8dm2iis71g5l1rzkblp"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 12/47] gnu: python-astropy-iers-data: Update to 0.2024.4.15.2.45.49.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (11 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 11/47] gnu: python-asdf-astropy: Update to 0.6.1 Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 13/47] gnu: python-astropy: Symplify package Sharlatan Hellseher
` (35 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-astropy-iers-data): Update to 0.2024.4.15.2.45.49.
Change-Id: Iaf902a0f506f149682868d0df0710d400b21f7e6
---
gnu/packages/astronomy.scm | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 749c581571..567cb54685 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1696,13 +1696,13 @@ (define-public python-astropy-iers-data
;; In case of changing the source method git-fetch, consider to check the
;; tag as it's not following the PyPI version, see
;; <https://github.com/astropy/astropy-iers-data/issues/17>.
- (version "0.2024.3.18.0.29.47")
+ (version "0.2024.4.15.2.45.49")
(source
(origin
(method url-fetch)
- (uri (pypi-uri "astropy-iers-data" version))
+ (uri (pypi-uri "astropy_iers_data" version))
(sha256
- (base32 "1mf03iqw09rp6d8hbby33f4jwfjan9gkb1z7xqsjr2jpj7zwpn3y"))))
+ (base32 "15wran1d5bw1mm3xl3ibp6i5aa7icj9p6g1mqcyp596qmdjnm8wp"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 13/47] gnu: python-astropy: Symplify package.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (12 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 12/47] gnu: python-astropy-iers-data: Update to 0.2024.4.15.2.45.49 Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 14/47] gnu: python-astropy: Update to 6.0.1 Sharlatan Hellseher
` (34 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-astropy): Simplify package.
[build-system]: Swap to pyproject-build-system.
[arguments] <#:phases>: Merge 'prepare-test-environment into custom
'check phase and move test arguments to <#:test-arguments>.
Change-Id: I80098c3eb4e9d95ef2c651d5416196165be3f7c0
---
gnu/packages/astronomy.scm | 47 ++++++++++++++++++--------------------
1 file changed, 22 insertions(+), 25 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 567cb54685..fc3c652132 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1565,9 +1565,20 @@ (define-public python-astropy
;; see https://github.com/astropy/astropy/pull/14311
(with-directory-excursion "cextern"
(for-each delete-file-recursively '("expat" "wcslib")))))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
(list
+ #:test-flags
+ #~(list "--pyargs" "astropy"
+ "-n" "auto"
+ "-k" (string-append
+ ;; Skip tests that need remote data.
+ "not remote_data"
+ ;; E astropy.samp.errors.SAMPProxyError:
+ ;; <SAMPProxyError 1: 'Timeout expired!'>
+ " and not test_main"
+ ;; E ModuleNotFoundError: No module named 'wofz'
+ " and not test_pickle_functional"))
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'preparations
@@ -1587,32 +1598,18 @@ (define-public python-astropy
(add-before 'install 'writable-compiler
(lambda _
(make-file-writable "astropy/_compiler.c")))
- (add-before 'check 'prepare-test-environment
- (lambda _
- ;; Some tests require a writable home.
- (setenv "HOME" "/tmp")
- (make-file-writable "astropy/_compiler.c")
- ;; Extensions have to be rebuilt before running the tests.
- (invoke "python" "setup.py" "build_ext" "--inplace"
- "-j" (number->string (parallel-job-count)))))
- ;; TODO: The swap to pyproject-build-system introduced all tests
- ;; failed due to pytest could not load conftest.py, find out how
- ;; to resolve it and migrate completely to pyproject-build-system.
(replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
+ (lambda* (#:key tests? test-flags #:allow-other-keys)
(when tests?
- (invoke "python" "-m" "pytest" "--pyargs" "astropy"
- ;; with -n : 133.00s
- ;; without -n : 326.14s
- "-n" (number->string (parallel-job-count))
- "-k" (string-append
- ;; Skip tests that need remote data.
- "not remote_data"
- ;; E astropy.samp.errors.SAMPProxyError:
- ;; <SAMPProxyError 1: 'Timeout expired!'>
- " and not test_main"
- ;; E ModuleNotFoundError: No module named 'wofz'
- " and not test_pickle_functional"))))))))
+ (setenv "HOME" "/tmp")
+ (make-file-writable "astropy/_compiler.c")
+ ;; Extensions have to be rebuilt before running the tests.
+ (invoke "python" "setup.py" "build_ext" "--inplace"
+ "-j" (number->string (parallel-job-count)))
+ ;; Step out of the source directory to avoid interference; we
+ ;; want to run the installed code with extensions etc.
+ (with-directory-excursion "/tmp"
+ (apply invoke "pytest" "-v" test-flags))))))))
(native-inputs
(list pkg-config
python-colorlog
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 14/47] gnu: python-astropy: Update to 6.0.1.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (13 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 13/47] gnu: python-astropy: Symplify package Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 15/47] gnu: python-astropy-healpix: Update to 1.0.3 Sharlatan Hellseher
` (33 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-astropy): Update to 6.0.1.
[arguments]: <#:test-flags>: Enable recently failing tests; disable some
new one.
[propagated-inputs]: Add python-matplotlib and python-scipy.
[native-inputs]: Remove python-matplotlib and python-scipy; add
python-threadpoolctl.
Change-Id: Iaa48c84565d11c944444ecd1fd77291f4b3c8c3c
---
gnu/packages/astronomy.scm | 19 +++++++++----------
1 file changed, 9 insertions(+), 10 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index fc3c652132..7fcb1a678d 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1546,13 +1546,13 @@ (define-public celestia-gtk
(define-public python-astropy
(package
(name "python-astropy")
- (version "6.0.0")
+ (version "6.0.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "astropy" version))
(sha256
- (base32 "1nbpqx7ibm8zsyyy17y5rmfjamwz6mv0sy4drlisap9hald81k83"))
+ (base32 "175k2h039c0b8rsf0fdphmxbpjrszd138j8z9zkhh1kd6pg7bac9"))
(modules '((guix build utils)))
(snippet
'(begin
@@ -1574,11 +1574,9 @@ (define-public python-astropy
"-k" (string-append
;; Skip tests that need remote data.
"not remote_data"
- ;; E astropy.samp.errors.SAMPProxyError:
- ;; <SAMPProxyError 1: 'Timeout expired!'>
- " and not test_main"
- ;; E ModuleNotFoundError: No module named 'wofz'
- " and not test_pickle_functional"))
+ ;; ValueError: The truth value of an array with more than
+ ;; one element is ambiguous. Use a.any() or a.all()
+ " and not test_table_comp[t16-t26]"))
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'preparations
@@ -1619,7 +1617,6 @@ (define-public python-astropy
python-h5py
python-ipython
python-jplephem
- python-matplotlib
python-objgraph
python-pandas
python-pyarrow
@@ -1629,21 +1626,23 @@ (define-public python-astropy
python-pytest-mpl
python-pytest-xdist
python-scikit-image
- python-scipy
python-setuptools-scm
python-sgp4
python-skyfield
+ python-threadpoolctl
python-timezonefinder))
(inputs
(list expat wcslib))
(propagated-inputs
(list python-astropy-iers-data
python-configobj
+ python-matplotlib
python-numpy
python-packaging
python-ply
python-pyerfa
- python-pyyaml))
+ python-pyyaml
+ python-scipy))
(home-page "https://www.astropy.org/")
(synopsis "Core package for Astronomy in Python")
(description
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 15/47] gnu: python-astropy-healpix: Update to 1.0.3.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (14 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 14/47] gnu: python-astropy: Update to 6.0.1 Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 16/47] gnu: python-jwst: Update to 1.14.0 Sharlatan Hellseher
` (32 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-astropy-healpix): Update to 1.0.3.
Change-Id: Iffc1d537bd8b3ec10fbb5ddb7c2fd6251813ccde
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 7fcb1a678d..6908be0694 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1654,13 +1654,13 @@ (define-public python-astropy
(define-public python-astropy-healpix
(package
(name "python-astropy-healpix")
- (version "1.0.2")
+ (version "1.0.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "astropy_healpix" version))
(sha256
- (base32 "0fij80ws16xzbph8z9v27w54dnc3vry8fk9p3mvxrglnjgnscvq5"))))
+ (base32 "0ilpwwvdnd4nchivwnbiy1hl07hd2mdg4wb90r2p05kvr5z2lpfy"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 16/47] gnu: python-jwst: Update to 1.14.0.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (15 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 15/47] gnu: python-astropy-healpix: Update to 1.0.3 Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 17/47] gnu: python-stcal: Update to 1.7.0 Sharlatan Hellseher
` (31 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-jwst): Update to 1.14.0.
[propagated-inputs]: Remove python-asdf-transform-schemas; add
python-importlib-metadata, python-packaging, python-pysiaf, and
python-synphot.
Change-Id: I0310e0680457a7851d07fa14406edf079000fcd5
---
gnu/packages/astronomy.scm | 10 +++++++---
1 file changed, 7 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 6908be0694..374229bcf4 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3969,13 +3969,13 @@ (define-public python-jplephem
(define-public python-jwst
(package
(name "python-jwst")
- (version "1.13.4")
+ (version "1.14.0")
(source (origin
(method url-fetch)
(uri (pypi-uri "jwst" version))
(sha256
(base32
- "0n5cfjayg15kf5p6pns7k2zfcldqz1464ndbldgzanc33fp9wnfz"))))
+ "0knl2x0z3djsln8mi3a4bkxjz49iwmnr1v6wwsk13zvpkfq21vv4"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -3992,19 +3992,21 @@ (define-public python-jwst
(propagated-inputs (list opencv
python-asdf
python-asdf-astropy
- python-asdf-transform-schemas
python-astropy
python-bayesicfitting
python-crds
python-drizzle
python-gwcs
+ python-importlib-metadata
python-jplephem
python-jsonschema
python-numpy
+ python-packaging
python-photutils
python-poppy
python-psutil
python-pyparsing
+ python-pysiaf
python-requests
python-scikit-image
python-scipy
@@ -4014,6 +4016,7 @@ (define-public python-jwst
python-stpipe
python-stsci-image
python-stsci-imagestats
+ python-synphot
python-tweakwcs
python-wiimatch))
(native-inputs (list python-colorama
@@ -4022,6 +4025,7 @@ (define-public python-jwst
python-pytest-doctestplus
python-pytest-openfiles
python-requests-mock
+ ;; python-ruff ; not packed yet in Guix
python-setuptools-scm))
(home-page "https://jwst-pipeline.readthedocs.io/en/latest/")
(synopsis
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 17/47] gnu: python-stcal: Update to 1.7.0.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (16 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 16/47] gnu: python-jwst: Update to 1.14.0 Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 18/47] gnu: python-stdatamodels: Update to 1.10.1 Sharlatan Hellseher
` (30 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-stcal): Update to 1.7.0.
[native-inputs]: Remove python-pytest-openfiles.
Change-Id: Ib33bb72ff73fcf569a2519b3353260461b63c143
---
gnu/packages/astronomy.scm | 5 ++---
1 file changed, 2 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 374229bcf4..cb5be9393d 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3229,13 +3229,13 @@ (define-public python-stsci-stimage
(define-public python-stcal
(package
(name "python-stcal")
- (version "1.6.1")
+ (version "1.7.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "stcal" version))
(sha256
- (base32 "1rwvzjpidz0sfp52mqgs25599hbvxyc4gdc1yk0kdm8aynhdwi82"))))
+ (base32 "04ippj90dn2671xg4rvncf7jsbpcflr7dr6jc2h52z7xfd1msb4d"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -3264,7 +3264,6 @@ (define-public python-stcal
python-pytest
python-pytest-cov
python-pytest-doctestplus
- python-pytest-openfiles
python-semantic-version
python-setuptools-scm))
(home-page "https://github.com/spacetelescope/stcal")
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 18/47] gnu: python-stdatamodels: Update to 1.10.1.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (17 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 17/47] gnu: python-stcal: Update to 1.7.0 Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 19/47] gnu: python-stsci-imagestats: Update to 1.8.2 Sharlatan Hellseher
` (29 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-stdatamodels): Update to 1.10.1.
Change-Id: Ib1626de00fbd060212b125c3a52e116aa126727e
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index cb5be9393d..32949d0a13 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3274,13 +3274,13 @@ (define-public python-stcal
(define-public python-stdatamodels
(package
(name "python-stdatamodels")
- (version "1.10.0")
+ (version "1.10.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "stdatamodels" version))
(sha256
- (base32 "00zc7z3f2fjvmms2h7176wnzjb025v0aasc6fiib9055sk34bc94"))))
+ (base32 "1h0imp6j9qrjadhvvqcgrx6dq94qhi0023c8c8r2wddhqrh0h5lg"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 19/47] gnu: python-stsci-imagestats: Update to 1.8.2.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (18 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 18/47] gnu: python-stdatamodels: Update to 1.10.1 Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 20/47] gnu: python-stsci-image: Refresh package style Sharlatan Hellseher
` (28 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-stsci-imagestats): Update to 1.8.2.
Change-Id: I13bb6eab789a8aa365f6bf0f0f892d8a17e3cc66
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 32949d0a13..b7f7127c24 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3162,13 +3162,13 @@ (define-public python-stsci-image
(define-public python-stsci-imagestats
(package
(name "python-stsci-imagestats")
- (version "1.8.0")
+ (version "1.8.2")
(source (origin
(method url-fetch)
(uri (pypi-uri "stsci.imagestats" version))
(sha256
(base32
- "01jqqrhcna0ghin48bbcza57d12371ny4l4pqws89irwdhd8xr0r"))))
+ "1nmya85bf2747c9ggya6my5b1slk6g2a7bk16rdv8r5a4ah9hda5"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 20/47] gnu: python-stsci-image: Refresh package style.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (19 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 19/47] gnu: python-stsci-imagestats: Update to 1.8.2 Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 21/47] gnu: python-synphot: Add custom check phase Sharlatan Hellseher
` (27 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-stsci-image): Adjust indentation.
[description]: Fix grammar.
Change-Id: I1f4bf751720a3be324644bf417104e36510c62a6
---
gnu/packages/astronomy.scm | 30 +++++++++++++++---------------
1 file changed, 15 insertions(+), 15 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index b7f7127c24..4fea09067c 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3135,28 +3135,28 @@ (define-public python-stsci-image
(package
(name "python-stsci-image")
(version "2.3.5")
- (source (origin
- (method url-fetch)
- (uri (pypi-uri "stsci.image" version))
- (sha256
- (base32
- "1vnp4256nbdvapa69cmm80sjz11ygxa49abr9nbvssj6nyyp5icb"))))
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "stsci.image" version))
+ (sha256
+ (base32 "1vnp4256nbdvapa69cmm80sjz11ygxa49abr9nbvssj6nyyp5icb"))))
(build-system pyproject-build-system)
(arguments
- (list #:phases #~(modify-phases %standard-phases
- (add-before 'check 'build-extensions
- (lambda _
- ;; Cython extensions have to be built before running
- ;; the tests.
- (invoke "python" "setup.py" "build_ext"
- "--inplace"))))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'check 'build-extensions
+ (lambda _
+ ;; Cython extensions have to be built before running the tests.
+ (invoke "python" "setup.py" "build_ext" "--inplace"))))))
(propagated-inputs (list python-numpy python-scipy))
(native-inputs (list python-pytest python-setuptools-scm))
(home-page "https://github.com/spacetelescope/stsci.image")
(synopsis "Image array manipulation functions")
(description
- "This package provides Python modules of @acronym{STScI, Space Telescope
-Science Institute} image array manipulation functions.")
+ "This package provides a Python module to various @acronym{STScI, Space
+Telescope Science Institute} image array manipulation functions.")
(license license:bsd-3)))
(define-public python-stsci-imagestats
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 21/47] gnu: python-synphot: Add custom check phase.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (20 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 20/47] gnu: python-stsci-image: Refresh package style Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 22/47] gnu: python-synphot: Update to 1.4.0 Sharlatan Hellseher
` (26 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-synphot): [arguments] <#:phases>:
Remove 'prepare-test-environment phase; add custom 'check phase.
Change-Id: I9cb6d65c226a555ccd62a3a6c08d00868a66f109
---
gnu/packages/astronomy.scm | 21 ++++++++-------------
1 file changed, 8 insertions(+), 13 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 4fea09067c..7ca051aa79 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4348,19 +4348,14 @@ (define-public python-synphot
(list
#:phases
#~(modify-phases %standard-phases
- (add-before 'check 'prepare-test-environment
- (lambda _
- (invoke "python" "setup.py" "build_ext" "--inplace")
- ;; To solve pytest/conftest issue. Pytest tries to load all
- ;; files with word 'test' in them.
- ;;
- ;; ImportError while loading conftest ...
- ;; _pytest.pathlib.ImportPathMismatchError: ...
- ;;
- (call-with-output-file "pytest.ini"
- (lambda (port)
- (format port "[pytest]
-python_files = test_*.py"))))))))
+ (replace 'check
+ (lambda* (#:key tests? test-flags #:allow-other-keys)
+ (when tests?
+ (invoke "python" "setup.py" "build_ext" "--inplace")
+ ;; Step out of the source directory to avoid interference; we
+ ;; want to run the installed code with extensions etc.
+ (with-directory-excursion "/tmp"
+ (apply invoke "pytest" "-v" test-flags))))))))
(propagated-inputs
(list python-astropy
python-dust-extinction
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 22/47] gnu: python-synphot: Update to 1.4.0.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (21 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 21/47] gnu: python-synphot: Add custom check phase Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 23/47] gnu: python-tweakwcs: Adjust indentation Sharlatan Hellseher
` (25 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-synphot): Update to 1.4.0.
Change-Id: I070381de76cfe1bf057d1c8032d2145d5c346fa2
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 7ca051aa79..c868cd824e 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4336,13 +4336,13 @@ (define-public python-suntime
(define-public python-synphot
(package
(name "python-synphot")
- (version "1.3.0")
+ (version "1.4.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "synphot" version))
(sha256
- (base32 "0a54bfrx9aar66040324sw9qdjz5lg67y28sjsxhyv9h3gppc7c0"))))
+ (base32 "0fk860bxaqbamrq15pkqlbvhbf70y50cra2mgvv9r0cxq37isbi6"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 23/47] gnu: python-tweakwcs: Adjust indentation.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (22 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 22/47] gnu: python-synphot: Update to 1.4.0 Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 24/47] gnu: python-tweakwcs: Update to 0.8.7 Sharlatan Hellseher
` (24 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-tweakwcs): Adjust indentation.
Change-Id: Ic8c79addbd0253c2364382e6a0e632945eafb05a
---
gnu/packages/astronomy.scm | 40 ++++++++++++++++++++------------------
1 file changed, 21 insertions(+), 19 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index c868cd824e..a43f21f0b1 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4379,26 +4379,28 @@ (define-public python-tweakwcs
(package
(name "python-tweakwcs")
(version "0.8.6")
- (source (origin
- (method url-fetch)
- (uri (pypi-uri "tweakwcs" version))
- (sha256
- (base32
- "1j75i02xzd36gp7pf6gks6nmp4ivi9cbphya4l69py5p62iaab99"))))
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "tweakwcs" version))
+ (sha256
+ (base32 "1j75i02xzd36gp7pf6gks6nmp4ivi9cbphya4l69py5p62iaab99"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-astropy
- python-gwcs
- python-numpy
- python-packaging
- python-spherical-geometry
- python-stsci-imagestats
- python-stsci-stimage))
- (native-inputs (list python-codecov
- python-pytest
- python-pytest-cov
- python-scipy
- python-semantic-version
- python-setuptools-scm))
+ (propagated-inputs
+ (list python-astropy
+ python-gwcs
+ python-numpy
+ python-packaging
+ python-spherical-geometry
+ python-stsci-imagestats
+ python-stsci-stimage))
+ (native-inputs
+ (list python-codecov
+ python-pytest
+ python-pytest-cov
+ python-scipy
+ python-semantic-version
+ python-setuptools-scm))
(home-page "https://tweakwcs.readthedocs.io/en/latest/")
(synopsis
"Algorithms for matching and aligning catalogs and for tweaking the WCS")
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 24/47] gnu: python-tweakwcs: Update to 0.8.7.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (23 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 23/47] gnu: python-tweakwcs: Adjust indentation Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 25/47] gnu: python-ginga: Update to 5.0.1 Sharlatan Hellseher
` (23 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-tweakwcs): Update to 0.8.7.
Change-Id: I2ef8f29839a99ec3b40efc34a61f57bc32216c8e
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index a43f21f0b1..f57165050f 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4378,13 +4378,13 @@ (define-public python-synphot
(define-public python-tweakwcs
(package
(name "python-tweakwcs")
- (version "0.8.6")
+ (version "0.8.7")
(source
(origin
(method url-fetch)
(uri (pypi-uri "tweakwcs" version))
(sha256
- (base32 "1j75i02xzd36gp7pf6gks6nmp4ivi9cbphya4l69py5p62iaab99"))))
+ (base32 "0cch4z5zmmi1s02n1wdwss8p7qhrzyiajkaik0gga510kgdsvx48"))))
(build-system pyproject-build-system)
(propagated-inputs
(list python-astropy
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 25/47] gnu: python-ginga: Update to 5.0.1.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (24 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 24/47] gnu: python-tweakwcs: Update to 0.8.7 Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 26/47] gnu: python-ginga: Set HOME for sanity check Sharlatan Hellseher
` (22 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-ginga): Update to 5.0.1.
[arguments] <#:phases>: Add 'relax-requirements phase.
[propagated-inputs]: Add opencv, python-exif-read python-packaging,
python-pyyaml, and python-tomli.
[native-inputs]: Add python-pytest-astropy-header.
Change-Id: I314bbd9a037b134a03f5a4a174ab878e9523e4b6
---
gnu/packages/astronomy.scm | 24 +++++++++++++++++++-----
1 file changed, 19 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index f57165050f..70e3daa501 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -707,31 +707,45 @@ (define-public python-gatspy
(define-public python-ginga
(package
(name "python-ginga")
- (version "5.0.0")
+ (version "5.0.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "ginga" version))
(sha256
- (base32 "1kydi6qqsscgsa55fa2za35vr5j8xjn09lfbnb5ajr8yxdgm4n3y"))))
+ (base32 "1zw93487a0ilkb5w5qjgrdnavxlmdmjp6c2wyc1wp8qahby9c0xa"))))
(build-system pyproject-build-system)
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'relax-requirements
+ (lambda _
+ (substitute* "setup.cfg"
+ ;; packaging>=23.1
+ ((">=23.1") ">=21.3")))))))
(propagated-inputs
- (list ;;python-exifread ; optional, not packed yet in Guix
+ (list opencv
python-astropy
python-astroquery
python-dateutil
+ python-exif-read
+ python-fitsio
python-magic
python-matplotlib
- python-fitsio
python-numpy
+ python-packaging
python-photutils
python-pillow
+ python-pyyaml
python-qtpy
- python-scipy))
+ python-scipy
+ python-tomli))
(native-inputs
(list python-attrs
python-docutils
python-pytest-astropy
+ python-pytest-astropy-header
python-semantic-version
python-tornado))
(home-page "https://ejeschke.github.io/ginga/")
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 26/47] gnu: python-ginga: Set HOME for sanity check.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (25 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 25/47] gnu: python-ginga: Update to 5.0.1 Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 27/47] gnu: python-gatspy: Refresh package style Sharlatan Hellseher
` (21 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-ginga) [arguments] <#:phases>: Add
'set-home phase.
Change-Id: I7fc9b043ae8ac465645215dabc9d8643b8e08fe2
---
gnu/packages/astronomy.scm | 8 +++++++-
1 file changed, 7 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 70e3daa501..d183a968ed 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -723,7 +723,13 @@ (define-public python-ginga
(lambda _
(substitute* "setup.cfg"
;; packaging>=23.1
- ((">=23.1") ">=21.3")))))))
+ ((">=23.1") ">=21.3"))))
+ (add-before 'check 'set-home
+ (lambda _
+ ;; Relax matplotlib warning: ... because the default path
+ ;; (/homeless-shelter/.config/matplotlib) is not a writable
+ ;; directory ...
+ (setenv "HOME" "/tmp"))))))
(propagated-inputs
(list opencv
python-astropy
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 27/47] gnu: python-gatspy: Refresh package style.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (26 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 26/47] gnu: python-ginga: Set HOME for sanity check Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 28/47] gnu: python-bayesicfitting: " Sharlatan Hellseher
` (20 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-gatspy): Adjust indentetion.
[arguments]: Use #~ qutation style.
<#:test-flags>: Activate tests for supersmoother.
[propagated-inputs]: Add python-supersmoother.
Change-Id: Ibbaae0f87693f5f4aa6e3f92d567881ad58dbfba
---
gnu/packages/astronomy.scm | 41 +++++++++++++++++++-------------------
1 file changed, 21 insertions(+), 20 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index d183a968ed..bf71843e05 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -675,33 +675,34 @@ (define-public python-gatspy
(package
(name "python-gatspy")
(version "0.3")
- (source (origin
- (method url-fetch)
- (uri (pypi-uri "gatspy" version))
- (sha256
- (base32
- "1gw2z6x8nikvnw2gkdl70gr81cwczd1pd7v8ry2kjn6k4kssrfav"))))
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "gatspy" version))
+ (sha256
+ (base32 "1gw2z6x8nikvnw2gkdl70gr81cwczd1pd7v8ry2kjn6k4kssrfav"))))
(build-system pyproject-build-system)
(arguments
(list
- #:phases
- '(modify-phases %standard-phases
- ;; Tests need this
- (add-before 'check 'set-HOME
- (lambda _ (setenv "HOME" "/tmp"))))
#:test-flags
- '(list "-k"
- (string-append
- ;; These tests require internet access
- "not test_download_data.py"
- ;; XXX: we don't have supersmoother
- " and not test_supersmoother.py"))))
- (propagated-inputs (list python-astroml python-numpy python-scipy))
+ ;; These tests require internet access
+ #~(list "-k" "not test_download_data.py")
+ #:phases
+ #~(modify-phases %standard-phases
+ ;; Tests need this
+ (add-before 'check 'set-HOME
+ (lambda _ (setenv "HOME" "/tmp"))))))
+ (propagated-inputs
+ (list python-astroml
+ python-numpy
+ python-scipy
+ python-supersmoother))
(native-inputs (list python-pytest python-nose python-setuptools-scm))
(home-page "https://github.com/astroml/gatspy")
(synopsis "General tools for astronomical time series in Python")
- (description "This package provides general tools for astronomical time
-series in Python.")
+ (description
+ "This package provides general tools for astronomical time series in
+Python.")
(license license:bsd-2)))
(define-public python-ginga
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 28/47] gnu: python-bayesicfitting: Refresh package style.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (27 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 27/47] gnu: python-gatspy: Refresh package style Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 29/47] gnu: python-bayesicfitting: Update to 3.2.1 Sharlatan Hellseher
` (19 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-bayesicfitting): Adjust
indentation.
[build-system]: Swap to pyproject-build-system.
[arguments] <#:test-flags>: Add them.
<#:phases>: Use test flags in 'check phase.
Change-Id: Iffc8591199bbaf2a0da95b6b22476e34121dbe79
---
gnu/packages/astronomy.scm | 42 ++++++++++++++++++++++----------------
1 file changed, 24 insertions(+), 18 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index bf71843e05..618d0e78bf 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1934,25 +1934,31 @@ (define-public python-bayesicfitting
(package
(name "python-bayesicfitting")
(version "3.2.0")
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/dokester/BayesicFitting")
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "0q6v7w9b1xzam0qn5vsl5wrdp1fkfpsn411pzd8wyy9giznpajxi"))))
- (build-system python-build-system)
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/dokester/BayesicFitting")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0q6v7w9b1xzam0qn5vsl5wrdp1fkfpsn411pzd8wyy9giznpajxi"))))
+ (build-system pyproject-build-system)
(arguments
- (list #:phases #~(modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (invoke "python" "-m" "unittest" "discover"
- "test")))))))
- (propagated-inputs (list python-astropy python-future python-matplotlib
- python-numpy python-scipy))
+ (list
+ #:test-flags #~(list "-m" "unittest" "discover" "test")
+ #:phases
+ #~(modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key tests? test-flags #:allow-other-keys)
+ (when tests?
+ (apply invoke "python" test-flags)))))))
+ (propagated-inputs
+ (list python-astropy
+ python-future
+ python-matplotlib
+ python-numpy
+ python-scipy))
(home-page "https://www.bayesicfitting.nl")
(synopsis "Python Toolbox for Astronimical Bayesian fitting")
(description
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 29/47] gnu: python-bayesicfitting: Update to 3.2.1.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (28 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 28/47] gnu: python-bayesicfitting: " Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 30/47] gnu: Add python-assay Sharlatan Hellseher
` (18 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-bayesicfitting): Update to 3.2.1.
Change-Id: I97bfc44920a3e8f7c2040088f284a38e0a66aa88
---
gnu/packages/astronomy.scm | 8 +++++---
1 file changed, 5 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 618d0e78bf..15aa313c41 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1933,16 +1933,18 @@ (define-public python-astroscrappy
(define-public python-bayesicfitting
(package
(name "python-bayesicfitting")
- (version "3.2.0")
+ (version "3.2.1")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/dokester/BayesicFitting")
- (commit (string-append "v" version))))
+ ;; Tag style has been changed, see
+ ;; <https://github.com/dokester/BayesicFitting/issues/23>.
+ (commit (string-append "v." version))))
(file-name (git-file-name name version))
(sha256
- (base32 "0q6v7w9b1xzam0qn5vsl5wrdp1fkfpsn411pzd8wyy9giznpajxi"))))
+ (base32 "0brqvy4r75vh93lj4jwv8wcrc96ka1v44f5ckjvr65y30plnfwg2"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 30/47] gnu: Add python-assay.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (29 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 29/47] gnu: python-bayesicfitting: Update to 3.2.1 Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 31/47] gnu: python-skyfield: Enable tests Sharlatan Hellseher
` (17 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489
Cc: Sharlatan Hellseher, Lars-Dominik Braun, Marius Bakke,
Munyoki Kilyungi, Sharlatan Hellseher, Tanguy Le Carrour, jgart
* gnu/packages/python-check.scm (python-assay): New variable.
Change-Id: I0ec910d8c37000ff08119a33e3f42af2269fa494
---
gnu/packages/python-check.scm | 34 +++++++++++++++++++++++++++++++++-
1 file changed, 33 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index 777791cb6c..6fdfaad6fb 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -9,7 +9,7 @@
;;; Copyright © 2020 Edouard Klein <edk@beaver-labs.com>
;;; Copyright © 2020, 2021 Vinicius Monego <monego@posteo.net>
;;; Copyright © 2020 Tanguy Le Carrour <tanguy@bioneland.org>
-;;; Copyright © 2021-2023 Sharlatan Hellseher <sharlatanus@gmail.com>
+;;; Copyright © 2021-2024 Sharlatan Hellseher <sharlatanus@gmail.com>
;;; Copyright © 2021 Brendan Tildesley <mail@brendan.scot>
;;; Copyright © 2021, 2022 Guillaume Le Vaillant <glv@posteo.net>
;;; Copyright © 2021 Bonface Munyoki Kilyungi <me@bonfacemunyoki.com>
@@ -61,6 +61,38 @@ (define-module (gnu packages python-check)
#:use-module (guix packages)
#:use-module (guix utils))
+(define-public python-assay
+ ;; No release yet.
+ (let ((commit "74617d70e77afa09f58b3169cf496679ac5d5621")
+ (revision "0"))
+ (package
+ (name "python-assay")
+ (version (git-version "0.0.0" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/brandon-rhodes/assay")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "1klxmamj88mn0q348r08zksccgsbch8sp0m4b04s3myrqnslp2nd"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags #~(list "-m" "assay.tests")
+ #:phases
+ #~(modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key tests? test-flags #:allow-other-keys)
+ (when tests?
+ (apply invoke "python" test-flags)))))))
+ (home-page "https://github.com/brandon-rhodes/assay")
+ (synopsis "Python testing framework")
+ (description
+ "This package provides opiniotated Python test framework prototype.")
+ (license license:expat))))
+
(define-public python-assertpy
(package
(name "python-assertpy")
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 31/47] gnu: python-skyfield: Enable tests.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (30 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 30/47] gnu: Add python-assay Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 32/47] gnu: python-sunpy: Update to 5.1.2 Sharlatan Hellseher
` (16 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-skyfield): Enable tests.
[source]: Swap to git checkout containing test data.
[build-system]: Swap to pyproject-build-system.
[native-inputs]: Add python-assay and python-pandas.
Change-Id: Ia4604ab2e44860dcf1294688639d3c54881f8d8c
---
gnu/packages/astronomy.scm | 26 +++++++++++++++++++-------
1 file changed, 19 insertions(+), 7 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 15aa313c41..dbe589ee1a 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -5048,15 +5048,27 @@ (define-public python-skyfield
(version "1.48")
(source
(origin
- (method url-fetch)
- (uri (pypi-uri "skyfield" version))
+ (method git-fetch) ; PyPI tarball lacks test data
+ (uri (git-reference
+ (url "https://github.com/skyfielders/python-skyfield")
+ (commit version)))
+ (file-name (git-file-name name version))
(sha256
- (base32 "1qaz0k0lkni3y423r66mkvj99bx08qa9xgqp3cs2df70cmdz30cb"))))
- (build-system python-build-system)
+ (base32 "0l324r4pz7d5w72c7c5akvjx40287hl7sl0qv7swvn2da53vmq0r"))))
+ (build-system pyproject-build-system)
(arguments
- ;; XXX: Tests depend on custom test framework
- ;; https://github.com/brandon-rhodes/assay
- `(#:tests? #f))
+ (list
+ #:test-flags
+ #~(list "-m" "assay" "--batch" "skyfield.tests")
+ #:phases
+ #~(modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key tests? test-flags #:allow-other-keys)
+ (when tests?
+ (with-directory-excursion "ci"
+ (apply invoke "python" test-flags))))))))
+ (native-inputs
+ (list python-assay python-pandas))
(propagated-inputs
(list python-certifi
python-jplephem
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 32/47] gnu: python-sunpy: Update to 5.1.2.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (31 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 31/47] gnu: python-skyfield: Enable tests Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 33/47] gnu: python-astroplan: Update to 0.10 Sharlatan Hellseher
` (15 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-sunpy): Update to 5.1.2.
Change-Id: I275445d688dfb3c3c3da18a37d7d21d79814f8ef
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index dbe589ee1a..0371ed6522 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2806,13 +2806,13 @@ (define-public python-sgp4
(define-public python-sunpy
(package
(name "python-sunpy")
- (version "5.1.1")
+ (version "5.1.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "sunpy" version))
(sha256
- (base32 "07rfdj4v29kcb718sgjfsagazvnl11r01ciqjvazr5x3yadfqrwk"))))
+ (base32 "0h62qh74xanj2drikjch7h0a5g4dsaf3v4qxx38vjazmibc37ynp"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 33/47] gnu: python-astroplan: Update to 0.10.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (32 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 32/47] gnu: python-sunpy: Update to 5.1.2 Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 34/47] gnu: python-rad: Update to 0.19.2 Sharlatan Hellseher
` (14 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-astroplan): Update to 0.10.
Change-Id: I80a988262e417f8a5501d02db5e16a93b5d037b4
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 0371ed6522..52f908611b 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1754,13 +1754,13 @@ (define-public python-astropy-iers-data
(define-public python-astroplan
(package
(name "python-astroplan")
- (version "0.9.1")
+ (version "0.10")
(source
(origin
(method url-fetch)
(uri (pypi-uri "astroplan" version))
(sha256
- (base32 "0jrgii0f11ckxvywinr9kcsljxnpnkh7hv5638wxwcb1iyjmx36r"))))
+ (base32 "0nl7yi0h5nn4id1jifd8hpwzqdarq9z2iq56x0j2kmj3472cjw0n"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 34/47] gnu: python-rad: Update to 0.19.2.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (33 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 33/47] gnu: python-astroplan: Update to 0.10 Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 35/47] gnu: python-regions: Update to 0.9 Sharlatan Hellseher
` (13 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-rad): Update to 0.19.2.
Change-Id: I4de8e8228f6d7ae1ae28cac726fcce5f2058f928
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 52f908611b..10eb640e56 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4862,13 +4862,13 @@ (define-public python-gwcs
(define-public python-rad
(package
(name "python-rad")
- (version "0.19.0")
+ (version "0.19.2")
(source (origin
(method url-fetch)
(uri (pypi-uri "rad" version))
(sha256
(base32
- "0cp3nrv1vq3g61zx6dq36vdlxd5i8g52vg4hwpxakmwvqvc8p3gd"))))
+ "08dh9asdjgfmczmqyjplgdvbk3n68qw6akd8h953wq6v3yr4k4rq"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 35/47] gnu: python-regions: Update to 0.9.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (34 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 34/47] gnu: python-rad: Update to 0.19.2 Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 36/47] gnu: python-roman-datamodels: Update to 0.19.1 Sharlatan Hellseher
` (12 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-regions): Update to 0.9.
[arguments] <#:phases>: Add 'create-setup.py phase, rename
'prepare-test-environment to 'build-extensions to reflect purpose.
[native-inputs]: Remove python-cython; add python-cython-3.
Change-Id: Ia634f93336eb7658c4eaeeb7ddb6539c2e0adee3
---
gnu/packages/astronomy.scm | 21 ++++++++++++++-------
1 file changed, 14 insertions(+), 7 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 10eb640e56..fe1bc54157 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2667,13 +2667,13 @@ (define-public python-pyvo
(define-public python-regions
(package
(name "python-regions")
- (version "0.8")
+ (version "0.9")
(source
(origin
(method url-fetch)
(uri (pypi-uri "regions" version))
(sha256
- (base32 "09401pz7926zlci7cznd78hmv9947f6jxyy2afqdqc1xaccpzcq2"))))
+ (base32 "0kvfdzqry3vcvphd7ldmppbgn3ab97hbfzwxfrlxls92yi41h3i6"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -2681,14 +2681,21 @@ (define-public python-regions
#~(list "-n" "auto")
#:phases
#~(modify-phases %standard-phases
+ ;; setup.py was removed in 84c80a280431adda00641cda5264c7de18b43b2f
+ ;; for some unknown reason, which caused the package to fail to
+ ;; build. It is being recreated based on that commit.
+ (add-after 'unpack 'create-setup.py
+ (lambda _
+ (call-with-output-file "setup.py"
+ (lambda (port)
+ (format port "from setuptools import setup
+from extension_helpers import get_extensions
+setup(ext_modules=get_extensions())")))))
;; This file is opened in both install and check phases.
- ;; XXX: Check if it is still required.
(add-before 'install 'writable-compiler
(lambda _ (make-file-writable "regions/_compiler.c")))
- (add-before 'check 'prepare-test-environment
+ (add-before 'check 'build-extensions
(lambda _
- (setenv "HOME" "/tmp")
- (make-file-writable "regions/_compiler.c")
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
(propagated-inputs
(list python-astropy
@@ -2698,7 +2705,7 @@ (define-public python-regions
python-scipy
python-shapely))
(native-inputs
- (list python-cython
+ (list python-cython-3
python-extension-helpers
python-pytest-arraydiff
python-pytest-astropy
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 36/47] gnu: python-roman-datamodels: Update to 0.19.1.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (35 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 35/47] gnu: python-regions: Update to 0.9 Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 37/47] gnu: python-casa-formats-io: Update to 0.3.0 Sharlatan Hellseher
` (11 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-roman-datamodels): Update to 0.19.1.
[propagated-inputs]: Remove python-asdf-standard.
Change-Id: I30e2adef137bb95f37dd7651ebf8c5e6f9e6155f
---
gnu/packages/astronomy.scm | 5 ++---
1 file changed, 2 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index fe1bc54157..14520b0596 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4971,13 +4971,13 @@ (define-public python-radiospectra
(define-public python-roman-datamodels
(package
(name "python-roman-datamodels")
- (version "0.19.0")
+ (version "0.19.1")
(source (origin
(method url-fetch)
(uri (pypi-uri "roman_datamodels" version))
(sha256
(base32
- "1ym06rj637fq9gxncdrn3phplk5djrzdwqghszis0di1dvsrif4j"))))
+ "1fp9rwzm5kzm0hjwwmlx7kym7yriyhxbfg2zr3y625pyvwpnl0a8"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -4990,7 +4990,6 @@ (define-public python-roman-datamodels
(setenv "HOME" "/tmp"))))))
(propagated-inputs (list python-asdf
python-asdf-astropy
- python-asdf-standard
python-astropy
python-gwcs
python-numpy
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 37/47] gnu: python-casa-formats-io: Update to 0.3.0.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (36 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 36/47] gnu: python-roman-datamodels: Update to 0.19.1 Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 38/47] gnu: python-specutils: Update to 1.14.0 Sharlatan Hellseher
` (10 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-casa-formats-io): Update to 0.3.0.
Change-Id: I3f8ca4c981ac31cc955d374b4e4735e53af4c868
---
gnu/packages/astronomy.scm | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 14520b0596..c5243dc6e9 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1973,7 +1973,7 @@ (define-public python-bayesicfitting
(define-public python-casa-formats-io
(package
(name "python-casa-formats-io")
- (version "0.2.2")
+ (version "0.3.0")
(source (origin
(method url-fetch)
(uri (pypi-uri "casa-formats-io" version))
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 38/47] gnu: python-specutils: Update to 1.14.0.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (37 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 37/47] gnu: python-casa-formats-io: Update to 0.3.0 Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 39/47] gnu: python-photutils: Update to 1.12 Sharlatan Hellseher
` (9 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-specutils): Update to 1.14.0.
Change-Id: Ied7078bc28d7b995574fb228797f1d046ea52feb
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index c5243dc6e9..ab5ea7394e 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3070,13 +3070,13 @@ (define-public python-spectral-cube
(define-public python-specutils
(package
(name "python-specutils")
- (version "1.13.0")
+ (version "1.14.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "specutils" version))
(sha256
- (base32 "0cfsigvsa0i7z2nq9ci9gxccp074kqsgr01xi2npk8xf7cjisrfq"))))
+ (base32 "06l0k8hi4hbfs825cnw948nnkl627g3w48n2pf9rspbvd3vbs2qf"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 39/47] gnu: python-photutils: Update to 1.12.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (38 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 38/47] gnu: python-specutils: Update to 1.14.0 Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 40/47] gnu: python-reproject: Update to 0.13.1 Sharlatan Hellseher
` (8 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-photutils): Update to 1.12.
[arguments]: <#:phases>: Add 'create-setup.py phase.
Change-Id: I94908eda0eb7741cb23d2d4dc969c91cdbd08fa2
---
gnu/packages/astronomy.scm | 16 ++++++++++++++--
1 file changed, 14 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index ab5ea7394e..dd5864a582 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2426,13 +2426,15 @@ (define-public python-ndcube
(define-public python-photutils
(package
(name "python-photutils")
- (version "1.10.0")
+ ;; PyPI version for source archive is missing minor 0, See
+ ;; <https://github.com/astropy/photutils/issues/1727>
+ (version "1.12")
(source
(origin
(method url-fetch)
(uri (pypi-uri "photutils" version))
(sha256
- (base32 "148zhdxhlcgj6dxyzaz78bzxw1q44qa9q9sfdqbfbla0s0w2jaay"))))
+ (base32 "0y4kcj6qjnzwjswc0c2iimh11b0jz6b9ianbh58w4gnb4y71lr6r"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -2440,6 +2442,16 @@ (define-public python-photutils
#~(list "-n" "auto")
#:phases
#~(modify-phases %standard-phases
+ ;; setup.py was removed in 36c3231ce5b80ad470fa78be2e96df859d2daf41
+ ;; for some unknown reason, which caused the package to fail to
+ ;; build. It is being recreated based on that commit.
+ (add-after 'unpack 'create-setup.py
+ (lambda _
+ (call-with-output-file "setup.py"
+ (lambda (port)
+ (format port "from setuptools import setup
+from extension_helpers import get_extensions
+setup(ext_modules=get_extensions())")))))
;; This file is opened in both install and check phases.
(add-before 'install 'writable-compiler
(lambda _ (make-file-writable "photutils/_compiler.c")))
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 40/47] gnu: python-reproject: Update to 0.13.1.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (39 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 39/47] gnu: python-photutils: Update to 1.12 Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 41/47] gnu: python-reproject: Enable tests Sharlatan Hellseher
` (7 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-reproject): Update to 0.13.1.
[arguments]: <#:phases>: Add 'create-setup.py phase.
[native-inputs]: Remove python-cython; add python-cython-3.
Change-Id: I77845fa1a9748901bc08235ba95060d39b64e467
---
gnu/packages/astronomy.scm | 17 ++++++++++++++---
1 file changed, 14 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index dd5864a582..32c70b9bdf 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2732,13 +2732,13 @@ (define-public python-regions
(define-public python-reproject
(package
(name "python-reproject")
- (version "0.13.0")
+ (version "0.13.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "reproject" version))
(sha256
- (base32 "1qkjbx8xsawhi1gjzqimais3crvkwgbzy1pr51x6anjjln88rgll"))))
+ (base32 "1xk809h2j3zj37l5lx4l87zanf9zxbxajcrff2b2f2i0jpnmxqv3"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -2754,6 +2754,17 @@ (define-public python-reproject
#:tests? #f
#:phases
#~(modify-phases %standard-phases
+ ;; setup.py was removed in a659a260bdd7635cddc8f33c4ea04a3b6d8c1f84
+ ;; for some unknown reason, which caused the package to fail to
+ ;; build. It is being recreated based on that commit.
+ ;; TODO: Check how to implement it in python-build-system.
+ (add-after 'unpack 'create-setup.py
+ (lambda _
+ (call-with-output-file "setup.py"
+ (lambda (port)
+ (format port "from setuptools import setup
+from extension_helpers import get_extensions
+setup(ext_modules=get_extensions())")))))
(add-before 'install 'writable-compiler
(lambda _
(make-file-writable "reproject/_compiler.c")))
@@ -2778,7 +2789,7 @@ (define-public python-reproject
python-shapely
python-zarr))
(native-inputs
- (list python-cython
+ (list python-cython-3
python-extension-helpers
python-pytest-astropy
python-semantic-version
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 41/47] gnu: python-reproject: Enable tests.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (40 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 40/47] gnu: python-reproject: Update to 0.13.1 Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 42/47] gnu: python-asdf: Adjust inputs Sharlatan Hellseher
` (6 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-reproject): Enable tests.
[arguments]: <#:tests-flags>: Add them as seen in tox.ini.
<#:phases>: Rename 'writable-home to 'prepare-test-environment to reflect
purpose and build extension before tests.
[native-inputs]: Add python-xdist.
Change-Id: I7a5454e3ce241b7a54626f8aba27602b4965c25b
---
gnu/packages/astronomy.scm | 25 ++++++++++++-------------
1 file changed, 12 insertions(+), 13 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 32c70b9bdf..58bf607059 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2742,16 +2742,11 @@ (define-public python-reproject
(build-system pyproject-build-system)
(arguments
(list
- ;; FIXME: Failing tests
- ;;
- ;; reproject/adaptive/core.py:7: in <module>
- ;; from .deforest import map_coordinates
- ;; E ModuleNotFoundError: No module named 'reproject.adaptive.deforest'
- ;;
- ;; Project removed setup.py and there is no alternative to `python
- ;; setup.py build_ext'
- ;; See: https://github.com/pypa/setuptools/discussions/3388
- #:tests? #f
+ #:test-flags
+ #~(list "--arraydiff"
+ "--arraydiff-default-format=fits"
+ "--numprocesses" "auto"
+ "--pyargs" "reproject")
#:phases
#~(modify-phases %standard-phases
;; setup.py was removed in a659a260bdd7635cddc8f33c4ea04a3b6d8c1f84
@@ -2771,9 +2766,11 @@ (define-public python-reproject
(add-before 'check 'writable-compiler
(lambda _
(make-file-writable "reproject/_compiler.c")))
- (add-before 'check 'writable-home
+ (add-before 'check 'prepare-test-environment
(lambda _
- (setenv "HOME" (getcwd)))))))
+ (setenv "HOME" "/tmp")
+ ;; Cython extensions have to be built before running the tests.
+ (invoke "python" "setup.py" "build_ext" "--inplace"))))))
(propagated-inputs
(list python-asdf
python-astropy
@@ -2791,9 +2788,11 @@ (define-public python-reproject
(native-inputs
(list python-cython-3
python-extension-helpers
+ python-pytest
python-pytest-astropy
+ python-pytest-xdist
+ ;; python-sunpy ; circular dependencies, test optional
python-semantic-version
- python-pytest
python-setuptools-scm))
(home-page "https://reproject.readthedocs.io")
(synopsis "Astronomical image reprojection in Python")
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 42/47] gnu: python-asdf: Adjust inputs.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (41 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 41/47] gnu: python-reproject: Enable tests Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 43/47] gnu: python-crds: Update to 11.17.20 Sharlatan Hellseher
` (5 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489
Cc: Sharlatan Hellseher, Iliya Tikhonenko, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
python-asdf requires python-semantic-version during runtime which may be
reproduced by:
guix shell python-asdf python -- python3 -c 'import asdf'
<...>
ModuleNotFoundError: No module named 'semantic_version'
* gnu/packages/astronomy.scm (python-asdf): Adjust inputs.
[native-inputs]: Remove python-semantic-version.
[propagated-inputs]: Add python-semantic-version.
(python-asdf-astropy, python-asdf-compression, python-asdf-coordinates-schemas,
python-asdf-wcs-schemas, python-asdf-zarr, python-astroalignn, python-ccdproc,
python-crds, python-ginga, python-gwcs, python-photutils, python-rad,
python-reproject, python-roman-datamodels, python-spectral-cube,
python-specutils, python-stcal, python-stdatamodels, python-stpipe,
python-stsynphot, python-sunpy, python-synphot, python-tweakwcs): Remove
python-semantic-version from native or propagated inputs.
Change-Id: I96bf57f77c327f4ff208e0b173e84bcdd4c287da
Reported-by: Iliya Tikhonenko <tikhonenko@mpe.mpg.de>
---
gnu/packages/astronomy.scm | 41 +++++++++-----------------------------
1 file changed, 9 insertions(+), 32 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 58bf607059..5cb62466cb 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -522,8 +522,7 @@ (define-public python-aplpy
python-shapely))
(native-inputs
(list python-pytest-astropy
- python-pytest-mpl
- python-semantic-version))
+ python-pytest-mpl))
(home-page "http://aplpy.github.io")
(synopsis "Astronomical Plotting Library in Python")
(description
@@ -753,7 +752,6 @@ (define-public python-ginga
python-docutils
python-pytest-astropy
python-pytest-astropy-header
- python-semantic-version
python-tornado))
(home-page "https://ejeschke.github.io/ginga/")
(synopsis "Scientific image viewer and toolkit for FITS files")
@@ -2014,8 +2012,7 @@ (define-public python-ccdproc
(build-system pyproject-build-system)
(native-inputs
(list python-memory-profiler
- python-pytest-astropy
- python-semantic-version))
+ python-pytest-astropy))
(propagated-inputs
(list python-astropy
python-astroscrappy
@@ -2138,7 +2135,6 @@ (define-public python-crds
python-nose
python-pylint
python-pytest
- python-semantic-version
python-setuptools-scm))
(home-page "https://hst-crds.stsci.edu")
(synopsis "Calibration Reference Data System for HST and JWST")
@@ -2481,7 +2477,6 @@ (define-public python-photutils
python-extension-helpers
python-pytest-astropy
python-pytest-xdist
- python-semantic-version
python-setuptools-scm))
(home-page "https://github.com/astropy/photutils")
(synopsis "Source detection and photometry")
@@ -2792,7 +2787,6 @@ (define-public python-reproject
python-pytest-astropy
python-pytest-xdist
;; python-sunpy ; circular dependencies, test optional
- python-semantic-version
python-setuptools-scm))
(home-page "https://reproject.readthedocs.io")
(synopsis "Astronomical image reprojection in Python")
@@ -2909,7 +2903,6 @@ (define-public python-sunpy
python-reproject
python-scikit-image
python-scipy
- python-semantic-version
;; python-spiceypy ; Not packed yet in Guix, long jorney.
python-sqlalchemy
python-tqdm
@@ -3069,7 +3062,6 @@ (define-public python-spectral-cube
python-pytest-astropy
python-pytest-xdist
python-regions
- python-semantic-version
python-setuptools-scm))
(home-page "https://spectral-cube.readthedocs.io/en/latest/")
(synopsis "Library for reading and analyzing astrophysical spectral data cubes")
@@ -3124,7 +3116,6 @@ (define-public python-specutils
(native-inputs
(list python-matplotlib
python-pytest-astropy
- python-semantic-version
python-setuptools-scm
python-spectral-cube))
(home-page "https://specutils.readthedocs.io/")
@@ -3322,7 +3313,6 @@ (define-public python-stcal
python-pytest
python-pytest-cov
python-pytest-doctestplus
- python-semantic-version
python-setuptools-scm))
(home-page "https://github.com/spacetelescope/stcal")
(synopsis "STScI tools and algorithms used in calibration pipelines")
@@ -3364,7 +3354,6 @@ (define-public python-stdatamodels
python-pytest-doctestplus
python-pytest-xdist
python-scipy
- python-semantic-version
python-setuptools-scm))
(home-page "https://github.com/spacetelescope/stdatamodels")
(synopsis
@@ -3390,8 +3379,8 @@ (define-public python-stpipe
;; See https://github.com/spacetelescope/stpipe/issues/114
#:test-flags #~(list "-k" "not test_roman_datamodel")))
(build-system pyproject-build-system)
- (propagated-inputs (list python-asdf python-astropy python-crds
- python-semantic-version python-stdatamodels))
+ (propagated-inputs
+ (list python-asdf python-astropy python-crds python-stdatamodels))
(native-inputs (list python-pytest python-pytest-doctestplus
python-pytest-openfiles python-setuptools-scm))
(home-page "https://github.com/spacetelescope/stpipe")
@@ -3429,7 +3418,6 @@ (define-public python-stsynphot
(native-inputs (list python-pytest
python-pytest-astropy
python-pytest-astropy-header
- python-semantic-version
python-setuptools-scm))
(home-page "https://github.com/spacetelescope/stsynphot_refactor")
(synopsis "Synthetic photometry using Astropy for HST and JWST")
@@ -4423,7 +4411,6 @@ (define-public python-synphot
(native-inputs
(list python-pytest
python-pytest-astropy
- python-semantic-version
python-setuptools-scm))
(home-page "https://github.com/spacetelescope/synphot_refactor")
(synopsis "Synthetic photometry using Astropy")
@@ -4457,7 +4444,6 @@ (define-public python-tweakwcs
python-pytest
python-pytest-cov
python-scipy
- python-semantic-version
python-setuptools-scm))
(home-page "https://tweakwcs.readthedocs.io/en/latest/")
(synopsis
@@ -4503,7 +4489,6 @@ (define-public python-asdf
python-pytest-doctestplus
python-pytest-remotedata
python-pytest-xdist
- python-semantic-version
python-setuptools-scm))
(propagated-inputs
(list python-asdf-standard
@@ -4513,7 +4498,8 @@ (define-public python-asdf
python-jmespath
python-lz4
python-numpy
- python-pyyaml))
+ python-pyyaml
+ python-semantic-version))
(home-page "https://github.com/asdf-format/asdf")
(synopsis "Python tools to handle ASDF files")
(description
@@ -4549,7 +4535,6 @@ (define-public python-asdf-compression
(native-inputs
(list python-numpy
python-pytest
- python-semantic-version
python-setuptools-scm))
(propagated-inputs
(list python-asdf
@@ -4648,7 +4633,6 @@ (define python-asdf-coordinates-schemas
(native-inputs
(list python-pytest
python-pytest-xdist
- python-semantic-version
python-setuptools-scm))
(propagated-inputs
(list python-asdf))
@@ -4767,7 +4751,7 @@ (define-public python-asdf-zarr
(propagated-inputs
(list python-asdf python-fsspec python-zarr))
(native-inputs
- (list python-pytest python-semantic-version python-setuptools-scm))
+ (list python-pytest python-setuptools-scm))
(home-page "https://github.com/asdf-format/asdf-zarr")
(synopsis "Asdf extension to support Zarr arrays")
(description
@@ -4802,7 +4786,6 @@ (define-public python-asdf-astropy
python-pandas
python-pytest-astropy
python-scipy
- python-semantic-version
python-setuptools-scm))
(propagated-inputs
(list python-asdf
@@ -4836,7 +4819,6 @@ (define python-asdf-wcs-schemas
(list python-asdf
python-pytest
python-pytest-openfiles
- python-semantic-version
python-setuptools-scm))
(propagated-inputs
(list python-asdf-coordinates-schemas
@@ -4867,7 +4849,6 @@ (define-public python-gwcs
python-pytest
python-pytest-doctestplus
python-pyyaml
- python-semantic-version
python-setuptools-scm))
(propagated-inputs
(list python-asdf
@@ -4905,9 +4886,7 @@ (define-public python-rad
;; python-rad -> python-roman-datamodels -> python-crds -> python-rad
#:test-flags #~(list "--ignore=tests/test_schemas.py")))
(native-inputs
- (list python-pytest
- python-semantic-version
- python-setuptools-scm))
+ (list python-pytest python-setuptools-scm))
(propagated-inputs (list python-asdf python-asdf-astropy))
(home-page "https://github.com/spacetelescope/rad")
(synopsis "Roman Attribute Dictionary")
@@ -5021,7 +5000,6 @@ (define-public python-roman-datamodels
python-pytest-doctestplus
python-pytest-env
python-pytest-xdist
- python-semantic-version
python-setuptools-scm))
(home-page "https://github.com/spacetelescope/roman_datamodels")
(synopsis "Roman Datamodels Support")
@@ -5055,8 +5033,7 @@ (define-public python-astroalign
(list python-astropy
python-ccdproc
python-pillow
- python-pytest
- python-semantic-version))
+ python-pytest))
(propagated-inputs
(list python-bottleneck
python-numpy
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 43/47] gnu: python-crds: Update to 11.17.20.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (42 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 42/47] gnu: python-asdf: Adjust inputs Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 44/47] gnu: python-stsci-stimage: Update to 0.2.8 Sharlatan Hellseher
` (4 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-crds): Update to 11.17.20.
Change-Id: I426241c2e216b0261787117a10ceab36197dff12
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 5cb62466cb..ee9a35fbc9 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2104,13 +2104,13 @@ (define-public python-cmyt
(define-public python-crds
(package
(name "python-crds")
- (version "11.17.19")
+ (version "11.17.20")
(source (origin
(method url-fetch)
(uri (pypi-uri "crds" version))
(sha256
(base32
- "1x48yw6jnz7dw0myc86ds0qaki6v1anqaihd5qzrxwrrl61kyp6x"))))
+ "0480jjklv2p60fp892dr4qglwv44k86hx29y8q1c967l9k53wc9f"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 44/47] gnu: python-stsci-stimage: Update to 0.2.8.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (43 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 43/47] gnu: python-crds: Update to 11.17.20 Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 45/47] gnu: python-stsci-stimage: Adjust test steps Sharlatan Hellseher
` (3 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-stsci-stimage): Update to 0.2.8.
Change-Id: Ib2f8b9544bc732959d87527d2c55f274dab4393b
---
gnu/packages/astronomy.scm | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index ee9a35fbc9..b4a82f6353 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3242,13 +3242,13 @@ (define-public python-stsci-imagestats
(define-public python-stsci-stimage
(package
(name "python-stsci-stimage")
- (version "0.2.6")
+ (version "0.2.8")
(source (origin
(method url-fetch)
- (uri (pypi-uri "stsci.stimage" version))
+ (uri (pypi-uri "stsci_stimage" version))
(sha256
(base32
- "0i7xby1gaiplvbqqv8a4f4cw1is8fwj89mix1z3bqrykqi3n24g0"))))
+ "0p188my6djy65a8j6qsc3v0dpr2svqqv90n0pxxzy52vdjiz3w0w"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 45/47] gnu: python-stsci-stimage: Adjust test steps.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (44 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 44/47] gnu: python-stsci-stimage: Update to 0.2.8 Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 46/47] gnu: Add scamp Sharlatan Hellseher
` (2 subsequent siblings)
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-stsci-stimage):
[arguments]: <#:test-flags>: Add them. <#:phases>: Fail over to default
'check phase and add 'waf-configure-build phase before check.
[native-inputs]: Remove python-codecov and, python-pytest-cov.
[description]: Fix indentation.
Change-Id: I350c4ced2cb4afaff72d4d4941d198932cd888f5
---
gnu/packages/astronomy.scm | 29 +++++++++++++++--------------
1 file changed, 15 insertions(+), 14 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index b4a82f6353..9d82bd4c89 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3242,6 +3242,8 @@ (define-public python-stsci-imagestats
(define-public python-stsci-stimage
(package
(name "python-stsci-stimage")
+ ;; PyPI version was 0.2.8 but the latest version tag on GiHub was 0.2.7,
+ ;; see <https://github.com/spacetelescope/stsci.stimage/issues/38>
(version "0.2.8")
(source (origin
(method url-fetch)
@@ -3252,27 +3254,26 @@ (define-public python-stsci-stimage
(build-system pyproject-build-system)
(arguments
(list
+ #:test-flags #~(list "test_c")
#:phases
#~(modify-phases %standard-phases
- ;; Test steps are taken from GitHub Actions.
- ;; See https://github.com/spacetelescope/stsci.stimage/issues/27
- (replace 'check
+ ;; Test steps are taken from GitHub Actions, see
+ ;; <https://github.com/spacetelescope/stsci.stimage/issues/27>
+ (add-before 'check 'waf-configure-build
(lambda _
(copy-file (string-append
- #$(this-package-native-input "python-waf") "/bin/waf")
- "waf")
- (invoke "python" "waf" "configure" "build" "do_tests"))))))
- (propagated-inputs (list python-numpy))
+ #$(this-package-native-input "python-waf") "/bin/waf")
+ "waf")
+ (invoke "python" "waf" "configure" "build"))))))
+ (propagated-inputs
+ (list python-numpy))
(native-inputs
- (list python-codecov
- python-pytest
- python-pytest-cov
- python-setuptools-scm
- python-waf))
+ (list python-pytest python-setuptools-scm python-waf))
(home-page "https://stscistimage.readthedocs.io/en/latest/")
(synopsis "STScI image processing")
- (description "This package provides an astronomical Python package with
-image processing functions: @code{xyxymatch}, @code{geomap}.")
+ (description
+ "This package provides an astronomical Python package with image
+processing functions: @code{xyxymatch}, @code{geomap}.")
(license license:bsd-3)))
(define-public python-stcal
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 46/47] gnu: Add scamp.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (45 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 45/47] gnu: python-stsci-stimage: Adjust test steps Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-04-20 23:22 ` [bug#70489] [PATCH 47/47] gnu: Add psfex Sharlatan Hellseher
2024-05-01 7:06 ` bug#70489: [PATCH 00/47] Astronomy 2024/04 updates Sharlatan Hellseher
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (scamp): New variable.
Change-Id: If32adb281017858b0e7d5816cecb509af3cec835
---
gnu/packages/astronomy.scm | 80 ++++++++++++++++++++++++++++++++++++++
1 file changed, 80 insertions(+)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 9d82bd4c89..a9e0583f39 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -69,6 +69,7 @@ (define-module (gnu packages astronomy)
#:use-module (gnu packages perl)
#:use-module (gnu packages photo)
#:use-module (gnu packages pkg-config)
+ #:use-module (gnu packages plotutils)
#:use-module (gnu packages pretty-print)
#:use-module (gnu packages python)
#:use-module (gnu packages python-build)
@@ -3771,6 +3772,85 @@ (define-public gpredict
@end itemize")
(license license:gpl2+)))
+(define-public scamp
+ (package
+ (name "scamp")
+ (version "2.10.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/astromatic/scamp")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0qic52mzw9avf1a1fsr85mlh63b7hq6d4wj2d00zgdllmclj5l9q"))))
+ (build-system gnu-build-system)
+ (arguments
+ (list
+ #:configure-flags
+ #~(list "CPPFLAGS=-fcommon"
+ "--enable-openblas"
+ "--enable-plplot"
+ (string-append "--with-curl-incdir="
+ #$(this-package-input "curl") "/include")
+ (string-append "--with-curl-libdir="
+ #$(this-package-input "curl") "/lib")
+ (string-append "--with-fftw-incdir="
+ #$(this-package-input "fftwf") "/include")
+ (string-append "--with-fftw-libdir="
+ #$(this-package-input "fftwf") "/lib")
+ (string-append "--with-openblas-incdir="
+ #$(this-package-input "openblas") "/include")
+ (string-append "--with-openblas-libdir="
+ #$(this-package-input "openblas") "/lib")
+ (string-append "--with-plplot-incdir="
+ #$(this-package-input "plplot") "/include")
+ (string-append "--with-plplot-libdir="
+ #$(this-package-input "plplot") "/lib"))))
+ (native-inputs
+ (list autoconf
+ automake
+ libtool
+ pkg-config
+ python-astropy
+ python-numpy
+ python-wrapper))
+ (inputs
+ (list curl fftwf openblas plplot))
+ (home-page "https://www.astromatic.net/software/scamp/")
+ (synopsis "Compute astrometric solutions")
+ (description
+ "@acronym{Software for Calibrating AstroMetry and Photometry,SCAMP} is a
+software that computes astrometric projection parameters from source catalogues
+derived from @url{http://fits.gsfc.nasa.gov/,FITS} images. The computed solution
+is expressed according to the
+@url{http://www.atnf.csiro.au/people/mcalabre/WCS/index.html,WCS} standard. The
+main features of SCAMP are:
+
+@itemize
+@item compatibility with @code{SExtractor} FITS or Multi-Extension FITS
+catalogue format in input
+@item generation of WCS-compliant and @code{SWarp}-compatible FITS image headers
+in output
+@item automatic grouping of catalogues on the sky
+@item selectable on-line astrometric reference catalogue
+@item automatic determination of scale, position angle, flipping and coordinate
+shift using fast pattern-matching
+@item various astrometric calibration modes for single detectors and detector
+arrays
+@item combined astrometric solutions for multi-channel/instrument surveys
+@item highly configurable astrometric distortion polynomials
+@item correction for differential chromatic refraction
+@item proper motion measurements
+@item multi-threaded code that takes advantage of multiple processors
+@item @url{http://www.ivoa.net/documents/VOTable,VOTable}-compliant XML output
+of meta-data
+@item @url{http://en.wikipedia.org/wiki/XSLT,XSLT} filter sheet provided for
+convenient access to metadata from a regular web browser
+@end itemize")
+ (license license:gpl3+)))
+
(define-public sgp4
;; Version tag v1.0 is dated to <2021-01-11>, use the lates commit instead.
(let ((commit "6a448b4850e5fbf8c1ca03bb5f6013a9fdc1fd91")
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* [bug#70489] [PATCH 47/47] gnu: Add psfex.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (46 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 46/47] gnu: Add scamp Sharlatan Hellseher
@ 2024-04-20 23:22 ` Sharlatan Hellseher
2024-05-01 7:06 ` bug#70489: [PATCH 00/47] Astronomy 2024/04 updates Sharlatan Hellseher
48 siblings, 0 replies; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-04-20 23:22 UTC (permalink / raw)
To: 70489; +Cc: Sharlatan Hellseher, Andreas Enge, Eric Bavier,
Sharlatan Hellseher
* gnu/packages/astronomy.scm (psfex): New variable.
Change-Id: I073df933b244811cd09343ea4951f481ad76b075
---
gnu/packages/astronomy.scm | 45 ++++++++++++++++++++++++++++++++++++++
1 file changed, 45 insertions(+)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index a9e0583f39..2afcee9aa0 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1131,6 +1131,51 @@ (define-public phd2
from Stark Labs.")
(license license:bsd-3)))
+(define-public psfex
+ (package
+ (name "psfex")
+ (version "3.24.2")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/astromatic/psfex")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0ykgzyxnxjxqk6b8jng006wjilg4fqaxclpfn8plg6brk1qf39sn"))))
+ (build-system gnu-build-system)
+ (arguments
+ (list
+ #:configure-flags
+ #~(list "CPPFLAGS=-fcommon"
+ "--enable-openblas"
+ "--enable-plplot"
+ (string-append "--with-fftw-libdir="
+ #$(this-package-input "fftw") "/lib")
+ (string-append "--with-fftw-incdir="
+ #$(this-package-input "fftw") "/include")
+ (string-append "--with-openblas-libdir="
+ #$(this-package-input "openblas") "/lib")
+ (string-append "--with-openblas-incdir="
+ #$(this-package-input "openblas") "/include")
+ (string-append "--with-plplot-libdir="
+ #$(this-package-input "plplot") "/lib")
+ (string-append "--with-plplot-incdir="
+ #$(this-package-input "plplot") "/include"))))
+ (native-inputs
+ (list autoconf automake libtool pkg-config))
+ (inputs
+ (list openblas fftw fftwf plplot))
+ (home-page "https://www.astromatic.net/software/psfex/")
+ (synopsis "Astronomical PSF modelling and quality assessment")
+ (description
+ "@acronym{PSFEx, PSF Extractor} extracts models of the @acronym{PSF,
+Point Spread Function} from FITS images processed with SExtractor, and
+measures the quality of images. The generated PSF models can be used for
+model-fitting photometry or morphological analyses.")
+ (license license:gpl3+)))
+
(define-public sextractor
(package
(name "sextractor")
--
2.41.0
^ permalink raw reply related [flat|nested] 51+ messages in thread* bug#70489: [PATCH 00/47] Astronomy 2024/04 updates.
2024-04-20 23:15 [bug#70488] [PATCH 00/47] Astronomy 2024/02 updates Sharlatan Hellseher
` (47 preceding siblings ...)
2024-04-20 23:22 ` [bug#70489] [PATCH 47/47] gnu: Add psfex Sharlatan Hellseher
@ 2024-05-01 7:06 ` Sharlatan Hellseher
2024-05-04 4:29 ` [bug#70489] " Leo Famulari
48 siblings, 1 reply; 51+ messages in thread
From: Sharlatan Hellseher @ 2024-05-01 7:06 UTC (permalink / raw)
To: 70489-done
[-- Attachment #1: Type: text/plain, Size: 54 bytes --]
Pushed as 3067eb8d60..147f1f2e0d to master.
--
Oleg
[-- Attachment #2: signature.asc --]
[-- Type: application/pgp-signature, Size: 832 bytes --]
^ permalink raw reply [flat|nested] 51+ messages in thread