* [bug#58624] [PATCH] guix gc: Add '--vacuum-store'.
@ 2022-10-19 9:26 Efraim Flashner
2022-10-20 18:51 ` Liliana Marie Prikler
2022-10-20 19:27 ` [bug#58624] [PATCH v2] guix gc: Add '--vacuum-database' Efraim Flashner
0 siblings, 2 replies; 6+ messages in thread
From: Efraim Flashner @ 2022-10-19 9:26 UTC (permalink / raw)
To: 58624; +Cc: Efraim Flashner
* guix/scripts/gc.scm (show-help, %options): Add '--vacuum-store'.
* guix/store/database.scm (vacuum-database): New procedure.
* doc/guix.texi (Invoking guix gc): Document the option.
---
doc/guix.texi | 11 +++++++++++
guix/scripts/gc.scm | 11 +++++++++++
guix/store/database.scm | 9 ++++++++-
3 files changed, 30 insertions(+), 1 deletion(-)
diff --git a/doc/guix.texi b/doc/guix.texi
index 3bf2dee752..89fd04415a 100644
--- a/doc/guix.texi
+++ b/doc/guix.texi
@@ -4531,6 +4531,17 @@ Invoking guix gc
this option is primarily useful when the daemon was running with
@option{--disable-deduplication}.
+@item --vacuum-store
+@cindex vacuum the store database
+@comment Avoid words like 'repair,' 'compress,' and 'optimize.'
+Guix uses an sqlite database to keep track of the items in (@pxref{The Store}).
+Overtime it is possible that the database may grow to a large size and become
+fragmented. As a result, one may wish to clear the freed space and join the
+partially used pages in the database left behind from removed packages or after
+running the garbage collector. Running @command{sudo guix gc --vacuum-store}
+will lock the database and @code{VACUUM} the store, defragmenting the database
+and purging freed pages, unlocking the database when it finishes..
+
@end table
@node Invoking guix pull
diff --git a/guix/scripts/gc.scm b/guix/scripts/gc.scm
index 65cd4bdf8b..5e775c5cdb 100644
--- a/guix/scripts/gc.scm
+++ b/guix/scripts/gc.scm
@@ -1,5 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2012-2013, 2015-2020, 2022 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2022 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -27,6 +28,7 @@ (define-module (guix scripts gc)
generation-number)
#:autoload (guix scripts package) (delete-generations)
#:autoload (gnu home) (home-generation-base)
+ #:autoload (guix store database) (vacuum-database)
#:use-module (ice-9 match)
#:use-module (ice-9 regex)
#:use-module (srfi srfi-1)
@@ -86,6 +88,10 @@ (define (show-help)
(display (G_ "
--clear-failures remove PATHS from the set of cached failures"))
(newline)
+ (display (G_ "
+ --vacuum-database repack the sqlite database tracking the store
+ using less space"))
+ (newline)
(display (G_ "
-h, --help display this help and exit"))
(display (G_ "
@@ -131,6 +137,11 @@ (define %options
(lambda args
(show-version-and-exit "guix gc")))
+ (option '("vacuum-database") #f #f
+ (lambda args
+ (vacuum-database)
+ (exit 0)))
+
(option '(#\C "collect-garbage") #f #t
(lambda (opt name arg result)
(let ((result (alist-cons 'action 'collect-garbage
diff --git a/guix/store/database.scm b/guix/store/database.scm
index 8d08def833..e664015673 100644
--- a/guix/store/database.scm
+++ b/guix/store/database.scm
@@ -2,6 +2,7 @@
;;; Copyright © 2017, 2019 Caleb Ristvedt <caleb.ristvedt@cune.org>
;;; Copyright © 2018, 2020, 2021 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2020 Jan (janneke) Nieuwenhuizen <janneke@gnu.org>
+;;; Copyright © 2022 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -45,7 +46,8 @@ (define-module (guix store database)
sqlite-register
register-items
%epoch
- reset-timestamps))
+ reset-timestamps
+ vacuum-database))
;;; Code for working with the store database directly.
@@ -438,3 +440,8 @@ (define* (register-items db items
(register db item)
(report))
items)))))
+
+(define (vacuum-database)
+ (let ((db (sqlite-open (store-database-file))))
+ (sqlite-exec db "VACUUM;")
+ (sqlite-close db)))
base-commit: 3bb145b6e2a8c84e7739ead9ae76dc4d42bb9850
--
2.38.0
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [bug#58624] [PATCH] guix gc: Add '--vacuum-store'.
2022-10-19 9:26 [bug#58624] [PATCH] guix gc: Add '--vacuum-store' Efraim Flashner
@ 2022-10-20 18:51 ` Liliana Marie Prikler
2022-10-20 19:22 ` Efraim Flashner
2022-10-20 19:27 ` [bug#58624] [PATCH v2] guix gc: Add '--vacuum-database' Efraim Flashner
1 sibling, 1 reply; 6+ messages in thread
From: Liliana Marie Prikler @ 2022-10-20 18:51 UTC (permalink / raw)
To: Efraim Flashner, 58624
Am Mittwoch, dem 19.10.2022 um 12:26 +0300 schrieb Efraim Flashner:
> * guix/scripts/gc.scm (show-help, %options): Add '--vacuum-store'.
> * guix/store/database.scm (vacuum-database): New procedure.
> * doc/guix.texi (Invoking guix gc): Document the option.
> ---
> doc/guix.texi | 11 +++++++++++
> guix/scripts/gc.scm | 11 +++++++++++
> guix/store/database.scm | 9 ++++++++-
> 3 files changed, 30 insertions(+), 1 deletion(-)
>
> diff --git a/doc/guix.texi b/doc/guix.texi
> index 3bf2dee752..89fd04415a 100644
> --- a/doc/guix.texi
> +++ b/doc/guix.texi
> @@ -4531,6 +4531,17 @@ Invoking guix gc
> this option is primarily useful when the daemon was running with
> @option{--disable-deduplication}.
>
> +@item --vacuum-store
> +@cindex vacuum the store database
> +@comment Avoid words like 'repair,' 'compress,' and 'optimize.'
> +Guix uses an sqlite database to keep track of the items in
> (@pxref{The Store}).
> +Overtime it is possible that the database may grow to a large size
> and become
> +fragmented. As a result, one may wish to clear the freed space and
> join the
> +partially used pages in the database left behind from removed
> packages or after
> +running the garbage collector. Running @command{sudo guix gc --
> vacuum-store}
> +will lock the database and @code{VACUUM} the store, defragmenting
> the database
> +and purging freed pages, unlocking the database when it finishes..
You're using vacuum-store here...
> @end table
>
> @node Invoking guix pull
> diff --git a/guix/scripts/gc.scm b/guix/scripts/gc.scm
> index 65cd4bdf8b..5e775c5cdb 100644
> --- a/guix/scripts/gc.scm
> +++ b/guix/scripts/gc.scm
> @@ -1,5 +1,6 @@
> ;;; GNU Guix --- Functional package management for GNU
> ;;; Copyright © 2012-2013, 2015-2020, 2022 Ludovic Courtès
> <ludo@gnu.org>
> +;;; Copyright © 2022 Efraim Flashner <efraim@flashner.co.il>
> ;;;
> ;;; This file is part of GNU Guix.
> ;;;
> @@ -27,6 +28,7 @@ (define-module (guix scripts gc)
> generation-number)
> #:autoload (guix scripts package) (delete-generations)
> #:autoload (gnu home) (home-generation-base)
> + #:autoload (guix store database) (vacuum-database)
> #:use-module (ice-9 match)
> #:use-module (ice-9 regex)
> #:use-module (srfi srfi-1)
> @@ -86,6 +88,10 @@ (define (show-help)
> (display (G_ "
> --clear-failures remove PATHS from the set of cached
> failures"))
> (newline)
> + (display (G_ "
> + --vacuum-database repack the sqlite database tracking the
> store
> + using less space"))
> + (newline)
> (display (G_ "
> -h, --help display this help and exit"))
> (display (G_ "
> @@ -131,6 +137,11 @@ (define %options
> (lambda args
> (show-version-and-exit "guix gc")))
>
> + (option '("vacuum-database") #f #f
> + (lambda args
> + (vacuum-database)
> + (exit 0)))
> +
> (option '(#\C "collect-garbage") #f #t
> (lambda (opt name arg result)
> (let ((result (alist-cons 'action 'collect-garbage
> diff --git a/guix/store/database.scm b/guix/store/database.scm
> index 8d08def833..e664015673 100644
> --- a/guix/store/database.scm
> +++ b/guix/store/database.scm
> @@ -2,6 +2,7 @@
> ;;; Copyright © 2017, 2019 Caleb Ristvedt <caleb.ristvedt@cune.org>
> ;;; Copyright © 2018, 2020, 2021 Ludovic Courtès <ludo@gnu.org>
> ;;; Copyright © 2020 Jan (janneke) Nieuwenhuizen <janneke@gnu.org>
> +;;; Copyright © 2022 Efraim Flashner <efraim@flashner.co.il>
> ;;;
> ;;; This file is part of GNU Guix.
> ;;;
> @@ -45,7 +46,8 @@ (define-module (guix store database)
> sqlite-register
> register-items
> %epoch
> - reset-timestamps))
> + reset-timestamps
> + vacuum-database))
>
> ;;; Code for working with the store database directly.
>
> @@ -438,3 +440,8 @@ (define* (register-items db items
> (register db item)
> (report))
> items)))))
> +
> +(define (vacuum-database)
> + (let ((db (sqlite-open (store-database-file))))
> + (sqlite-exec db "VACUUM;")
> + (sqlite-close db)))
... but vacuum-database here.
Since the database is just a part of the store, I think making it
"vacuum-database" everywhere ought to make it both more consistent and
more correct.
Cheers
^ permalink raw reply [flat|nested] 6+ messages in thread
* [bug#58624] [PATCH] guix gc: Add '--vacuum-store'.
2022-10-20 18:51 ` Liliana Marie Prikler
@ 2022-10-20 19:22 ` Efraim Flashner
0 siblings, 0 replies; 6+ messages in thread
From: Efraim Flashner @ 2022-10-20 19:22 UTC (permalink / raw)
To: Liliana Marie Prikler; +Cc: 58624
[-- Attachment #1: Type: text/plain, Size: 5763 bytes --]
On Thu, Oct 20, 2022 at 08:51:04PM +0200, Liliana Marie Prikler wrote:
> Am Mittwoch, dem 19.10.2022 um 12:26 +0300 schrieb Efraim Flashner:
> > * guix/scripts/gc.scm (show-help, %options): Add '--vacuum-store'.
> > * guix/store/database.scm (vacuum-database): New procedure.
> > * doc/guix.texi (Invoking guix gc): Document the option.
> > ---
> > doc/guix.texi | 11 +++++++++++
> > guix/scripts/gc.scm | 11 +++++++++++
> > guix/store/database.scm | 9 ++++++++-
> > 3 files changed, 30 insertions(+), 1 deletion(-)
> >
> > diff --git a/doc/guix.texi b/doc/guix.texi
> > index 3bf2dee752..89fd04415a 100644
> > --- a/doc/guix.texi
> > +++ b/doc/guix.texi
> > @@ -4531,6 +4531,17 @@ Invoking guix gc
> > this option is primarily useful when the daemon was running with
> > @option{--disable-deduplication}.
> >
> > +@item --vacuum-store
> > +@cindex vacuum the store database
> > +@comment Avoid words like 'repair,' 'compress,' and 'optimize.'
> > +Guix uses an sqlite database to keep track of the items in
> > (@pxref{The Store}).
> > +Overtime it is possible that the database may grow to a large size
> > and become
> > +fragmented. As a result, one may wish to clear the freed space and
> > join the
> > +partially used pages in the database left behind from removed
> > packages or after
> > +running the garbage collector. Running @command{sudo guix gc --
> > vacuum-store}
> > +will lock the database and @code{VACUUM} the store, defragmenting
> > the database
> > +and purging freed pages, unlocking the database when it finishes..
> You're using vacuum-store here...
>
> > @end table
> >
> > @node Invoking guix pull
> > diff --git a/guix/scripts/gc.scm b/guix/scripts/gc.scm
> > index 65cd4bdf8b..5e775c5cdb 100644
> > --- a/guix/scripts/gc.scm
> > +++ b/guix/scripts/gc.scm
> > @@ -1,5 +1,6 @@
> > ;;; GNU Guix --- Functional package management for GNU
> > ;;; Copyright © 2012-2013, 2015-2020, 2022 Ludovic Courtès
> > <ludo@gnu.org>
> > +;;; Copyright © 2022 Efraim Flashner <efraim@flashner.co.il>
> > ;;;
> > ;;; This file is part of GNU Guix.
> > ;;;
> > @@ -27,6 +28,7 @@ (define-module (guix scripts gc)
> > generation-number)
> > #:autoload (guix scripts package) (delete-generations)
> > #:autoload (gnu home) (home-generation-base)
> > + #:autoload (guix store database) (vacuum-database)
> > #:use-module (ice-9 match)
> > #:use-module (ice-9 regex)
> > #:use-module (srfi srfi-1)
> > @@ -86,6 +88,10 @@ (define (show-help)
> > (display (G_ "
> > --clear-failures remove PATHS from the set of cached
> > failures"))
> > (newline)
> > + (display (G_ "
> > + --vacuum-database repack the sqlite database tracking the
> > store
> > + using less space"))
> > + (newline)
> > (display (G_ "
> > -h, --help display this help and exit"))
> > (display (G_ "
> > @@ -131,6 +137,11 @@ (define %options
> > (lambda args
> > (show-version-and-exit "guix gc")))
> >
> > + (option '("vacuum-database") #f #f
> > + (lambda args
> > + (vacuum-database)
> > + (exit 0)))
> > +
> > (option '(#\C "collect-garbage") #f #t
> > (lambda (opt name arg result)
> > (let ((result (alist-cons 'action 'collect-garbage
> > diff --git a/guix/store/database.scm b/guix/store/database.scm
> > index 8d08def833..e664015673 100644
> > --- a/guix/store/database.scm
> > +++ b/guix/store/database.scm
> > @@ -2,6 +2,7 @@
> > ;;; Copyright © 2017, 2019 Caleb Ristvedt <caleb.ristvedt@cune.org>
> > ;;; Copyright © 2018, 2020, 2021 Ludovic Courtès <ludo@gnu.org>
> > ;;; Copyright © 2020 Jan (janneke) Nieuwenhuizen <janneke@gnu.org>
> > +;;; Copyright © 2022 Efraim Flashner <efraim@flashner.co.il>
> > ;;;
> > ;;; This file is part of GNU Guix.
> > ;;;
> > @@ -45,7 +46,8 @@ (define-module (guix store database)
> > sqlite-register
> > register-items
> > %epoch
> > - reset-timestamps))
> > + reset-timestamps
> > + vacuum-database))
> >
> > ;;; Code for working with the store database directly.
> >
> > @@ -438,3 +440,8 @@ (define* (register-items db items
> > (register db item)
> > (report))
> > items)))))
> > +
> > +(define (vacuum-database)
> > + (let ((db (sqlite-open (store-database-file))))
> > + (sqlite-exec db "VACUUM;")
> > + (sqlite-close db)))
> ... but vacuum-database here.
>
> Since the database is just a part of the store, I think making it
> "vacuum-database" everywhere ought to make it both more consistent and
> more correct.
Agreed. I even made sure it was --vacuum-database in the help menu from
'guix gc --help'. Truth is I wrote the code and then the next day I
wrote the documentation, so figures I would document it wrong ...
--
Efraim Flashner <efraim@flashner.co.il> אפרים פלשנר
GPG key = A28B F40C 3E55 1372 662D 14F7 41AA E7DC CA3D 8351
Confidentiality cannot be guaranteed on emails sent or received unencrypted
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^ permalink raw reply [flat|nested] 6+ messages in thread
* [bug#58624] [PATCH v2] guix gc: Add '--vacuum-database'.
2022-10-19 9:26 [bug#58624] [PATCH] guix gc: Add '--vacuum-store' Efraim Flashner
2022-10-20 18:51 ` Liliana Marie Prikler
@ 2022-10-20 19:27 ` Efraim Flashner
2022-11-03 16:20 ` Christopher Baines
1 sibling, 1 reply; 6+ messages in thread
From: Efraim Flashner @ 2022-10-20 19:27 UTC (permalink / raw)
To: 58624; +Cc: Efraim Flashner
* guix/scripts/gc.scm (show-help, %options): Add '--vacuum-database'.
* guix/store/database.scm (vacuum-database): New procedure.
* doc/guix.texi (Invoking guix gc): Document the option.
---
doc/guix.texi | 12 ++++++++++++
guix/scripts/gc.scm | 11 +++++++++++
guix/store/database.scm | 9 ++++++++-
3 files changed, 31 insertions(+), 1 deletion(-)
diff --git a/doc/guix.texi b/doc/guix.texi
index fd8b19fe46..1c13480cbc 100644
--- a/doc/guix.texi
+++ b/doc/guix.texi
@@ -4531,6 +4531,18 @@ Invoking guix gc
this option is primarily useful when the daemon was running with
@option{--disable-deduplication}.
+@item --vacuum-database
+@cindex vacuum the store database
+@comment Avoid words like 'repair,' 'compress,' and 'optimize.'
+Guix uses an sqlite database to keep track of the items in (@pxref{The Store}).
+Overtime it is possible that the database may grow to a large size and become
+fragmented. As a result, one may wish to clear the freed space and join the
+partially used pages in the database left behind from removed packages or after
+running the garbage collector. Running @command{sudo guix gc
+--vacuum-database} will lock the database and @code{VACUUM} the store,
+defragmenting the database and purging freed pages, unlocking the database when
+it finishes..
+
@end table
@node Invoking guix pull
diff --git a/guix/scripts/gc.scm b/guix/scripts/gc.scm
index 65cd4bdf8b..5e775c5cdb 100644
--- a/guix/scripts/gc.scm
+++ b/guix/scripts/gc.scm
@@ -1,5 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2012-2013, 2015-2020, 2022 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2022 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -27,6 +28,7 @@ (define-module (guix scripts gc)
generation-number)
#:autoload (guix scripts package) (delete-generations)
#:autoload (gnu home) (home-generation-base)
+ #:autoload (guix store database) (vacuum-database)
#:use-module (ice-9 match)
#:use-module (ice-9 regex)
#:use-module (srfi srfi-1)
@@ -86,6 +88,10 @@ (define (show-help)
(display (G_ "
--clear-failures remove PATHS from the set of cached failures"))
(newline)
+ (display (G_ "
+ --vacuum-database repack the sqlite database tracking the store
+ using less space"))
+ (newline)
(display (G_ "
-h, --help display this help and exit"))
(display (G_ "
@@ -131,6 +137,11 @@ (define %options
(lambda args
(show-version-and-exit "guix gc")))
+ (option '("vacuum-database") #f #f
+ (lambda args
+ (vacuum-database)
+ (exit 0)))
+
(option '(#\C "collect-garbage") #f #t
(lambda (opt name arg result)
(let ((result (alist-cons 'action 'collect-garbage
diff --git a/guix/store/database.scm b/guix/store/database.scm
index 8d08def833..e664015673 100644
--- a/guix/store/database.scm
+++ b/guix/store/database.scm
@@ -2,6 +2,7 @@
;;; Copyright © 2017, 2019 Caleb Ristvedt <caleb.ristvedt@cune.org>
;;; Copyright © 2018, 2020, 2021 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2020 Jan (janneke) Nieuwenhuizen <janneke@gnu.org>
+;;; Copyright © 2022 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -45,7 +46,8 @@ (define-module (guix store database)
sqlite-register
register-items
%epoch
- reset-timestamps))
+ reset-timestamps
+ vacuum-database))
;;; Code for working with the store database directly.
@@ -438,3 +440,8 @@ (define* (register-items db items
(register db item)
(report))
items)))))
+
+(define (vacuum-database)
+ (let ((db (sqlite-open (store-database-file))))
+ (sqlite-exec db "VACUUM;")
+ (sqlite-close db)))
base-commit: 00ff6f7c399670a76efffb91276dea2633cc130c
--
2.38.0
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [bug#58624] [PATCH v2] guix gc: Add '--vacuum-database'.
2022-10-20 19:27 ` [bug#58624] [PATCH v2] guix gc: Add '--vacuum-database' Efraim Flashner
@ 2022-11-03 16:20 ` Christopher Baines
2022-11-06 12:04 ` bug#58624: " Efraim Flashner
0 siblings, 1 reply; 6+ messages in thread
From: Christopher Baines @ 2022-11-03 16:20 UTC (permalink / raw)
To: Efraim Flashner; +Cc: 58624
[-- Attachment #1: Type: text/plain, Size: 495 bytes --]
Efraim Flashner <efraim@flashner.co.il> writes:
> * guix/scripts/gc.scm (show-help, %options): Add '--vacuum-database'.
> * guix/store/database.scm (vacuum-database): New procedure.
> * doc/guix.texi (Invoking guix gc): Document the option.
> ---
> doc/guix.texi | 12 ++++++++++++
> guix/scripts/gc.scm | 11 +++++++++++
> guix/store/database.scm | 9 ++++++++-
> 3 files changed, 31 insertions(+), 1 deletion(-)
I haven't tried this out, but it sounds good to me +1.
Chris
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^ permalink raw reply [flat|nested] 6+ messages in thread
* bug#58624: [PATCH v2] guix gc: Add '--vacuum-database'.
2022-11-03 16:20 ` Christopher Baines
@ 2022-11-06 12:04 ` Efraim Flashner
0 siblings, 0 replies; 6+ messages in thread
From: Efraim Flashner @ 2022-11-06 12:04 UTC (permalink / raw)
To: Christopher Baines; +Cc: 58624-done
[-- Attachment #1: Type: text/plain, Size: 970 bytes --]
On Thu, Nov 03, 2022 at 05:20:24PM +0100, Christopher Baines wrote:
>
> Efraim Flashner <efraim@flashner.co.il> writes:
>
> > * guix/scripts/gc.scm (show-help, %options): Add '--vacuum-database'.
> > * guix/store/database.scm (vacuum-database): New procedure.
> > * doc/guix.texi (Invoking guix gc): Document the option.
> > ---
> > doc/guix.texi | 12 ++++++++++++
> > guix/scripts/gc.scm | 11 +++++++++++
> > guix/store/database.scm | 9 ++++++++-
> > 3 files changed, 31 insertions(+), 1 deletion(-)
>
> I haven't tried this out, but it sounds good to me +1.
Thanks. In the documentation I used overtime vs 'over time' and I had a
double period at the end of the last sentence, which I cleaned up before
pushing.
--
Efraim Flashner <efraim@flashner.co.il> אפרים פלשנר
GPG key = A28B F40C 3E55 1372 662D 14F7 41AA E7DC CA3D 8351
Confidentiality cannot be guaranteed on emails sent or received unencrypted
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2022-10-19 9:26 [bug#58624] [PATCH] guix gc: Add '--vacuum-store' Efraim Flashner
2022-10-20 18:51 ` Liliana Marie Prikler
2022-10-20 19:22 ` Efraim Flashner
2022-10-20 19:27 ` [bug#58624] [PATCH v2] guix gc: Add '--vacuum-database' Efraim Flashner
2022-11-03 16:20 ` Christopher Baines
2022-11-06 12:04 ` bug#58624: " Efraim Flashner
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