From 4b0d8e20915ee674054cb3bd1b3573a9f42bd08a Mon Sep 17 00:00:00 2001
From: Sharlatan Hellseher <sharlatanus@gmail.com>
Date: Sat, 22 May 2021 20:52:49 +0100
Subject: [PATCH] gnu: astropy: rc1

* gnu/packages/astronomy.scm (python-astropy)
 [inputs]: refactor inputs
 [package] Attemp to make test working no-successufl run, it failed with

starting phase `check'
/tmp/guix-build-python-astropy-4.2.1.drv-0/astropy-4.2.1/astropy/config/configuration.py:582: ConfigurationMissingWarning: Configuration defaults will be used due to FileNotFoundError:2 on None
  warn(ConfigurationMissingWarning(msg))
ImportError while loading conftest '/tmp/guix-build-python-astropy-4.2.1.drv-0/astropy-4.2.1/conftest.py'.
conftest.py:11: in <module>
    from astropy import __version__
astropy/__init__.py:248: in <module>
    _initialize_astropy()
astropy/__init__.py:203: in _initialize_astropy
    raise ImportError('You appear to be trying to import astropy from '
E   ImportError: You appear to be trying to import astropy from within a source checkout or from an editable installation without building the extension modules first. Either run:
E
E     pip install -e .
E
E   or
E
E     python setup.py build_ext --inplace
E
E   to make sure the extension modules are built
command "pytest" "-vv" failed with status 4
builder for `/gnu/store/syjzb0sjd01af6i13k5pa6snwxk1im3x-python-astropy-4.2.1.drv' failed with exit code 1
---
 gnu/packages/astronomy.scm | 71 +++++++++++++++++++++-----------------
 1 file changed, 40 insertions(+), 31 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index b607fbd3d7..8ea665380e 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1085,13 +1085,17 @@ orbit around the Earth.")
     (arguments
      ;; NOTE: (Sharlatan-20210426T204315+0100): Tests require build astropy
      ;; module, it needs a good review on how to enable them.
-     `(#:tests? #f
+     `(;#:tests? #f
        #:phases
        (modify-phases %standard-phases
          (add-before 'build 'setenv-astropy-system-all
            (lambda _
              (setenv "ASTROPY_USE_SYSTEM_ALL" "1")
              #t))
+         (replace 'check
+           (lambda* (#:key inputs outputs #:allow-other-keys)
+             (add-installed-pythonpath inputs outputs)
+             (invoke "pytest" "-vv")))
          ;; NOTE: (Sharlatan-20210426T200127+0100): it fails during install
          ;; phases without the file is removed
          ;;
@@ -1108,37 +1112,42 @@ orbit around the Earth.")
              #t)))))
     (native-inputs
      `(("cfitsio" ,cfitsio)
-       ("coverage" ,python-coverage)
-       ("cython" ,python-cython)
-       ("extension-helpers" ,python-extension-helpers)
-       ("ipython" ,python-ipython)
-       ("objgraph" ,python-objgraph)
-       ("pkg-config" ,pkg-config)
-       ("setuptools-scm" ,python-setuptools-scm)
-       ("sgp4" ,python-sgp4)
-       ("skyfield" ,python-skyfield)))
-    (inputs
-     `(("asdf" ,python-asdf)
-       ("beautifulsoup4" ,python-beautifulsoup4)
-       ("bleach" ,python-bleach)
-       ("bottleneck" ,python-bottleneck)
-       ("cfitsio" ,cfitsio)
-       ("dask" ,python-dask)
-       ("expat" ,expat)
-       ("graphviz" ,graphviz)
-       ("h5py" ,python-h5py)
-       ("html5lib" ,python-html5lib)
-       ("jplephem" ,python-jplephem)
-       ("matplotlib" ,python-matplotlib)
-       ("mpmath" ,python-mpmath)
-       ("numpy" ,python-numpy)
-       ("pandas" ,python-pandas)
-       ("pyerfa" ,python-pyerfa)
-       ("pytz" ,python-pytz)
-       ("pyyaml" ,python-pyyaml)
-       ("scipy" ,python-scipy)
-       ("sortedcontainers" ,python-sortedcontainers)
+       ("python-asdf" ,python-asdf)("expat" ,expat)
+       ("python-beautifulsoup4" ,python-beautifulsoup4)
+       ("python-bleach" ,python-bleach)
+       ("python-bottleneck" ,python-bottleneck)
+       ("python-coverage" ,python-coverage)
+       ("python-cython" ,python-cython)
+       ("python-dask" ,python-dask)
+       ("python-extension-helpers" ,python-extension-helpers)
+       ("python-graphviz" ,graphviz)
+       ("python-h5py" ,python-h5py)
+       ("python-html5lib" ,python-html5lib)
+       ("python-hypothesis" ,python-hypothesis)
+       ("python-ipython" ,python-ipython)
+       ("python-jplephem" ,python-jplephem)
+       ("python-matplotlib" ,python-matplotlib)
+       ("python-mpmath" ,python-mpmath)
+       ("python-objgraph" ,python-objgraph)
+       ("python-pandas" ,python-pandas)
+       ("python-pkg-config" ,pkg-config)
+       ("python-pytest" ,python-pytest)
+       ("python-pytest-astropy" ,python-pytest-astropy)
+       ("python-pytest-cov" ,python-pytest-cov)
+       ("python-pytest-xdist" ,python-pytest-xdist)
+       ("python-pytz" ,python-pytz)
+       ("python-pyyaml" ,python-pyyaml)
+       ("python-scipy" ,python-scipy)
+       ("python-setuptools" ,python-setuptools)
+       ("python-setuptools-scm" ,python-setuptools-scm)
+       ("python-sgp4" ,python-sgp4)
+       ("python-skyfield" ,python-skyfield)
+       ("python-sortedcontainers" ,python-sortedcontainers)
+       ("python-tox" ,python-tox)
        ("wcslib" ,wcslib)))
+    (propagated-inputs
+     `(("python-numpy" ,python-numpy)
+       ("python-pyerfa" ,python-pyerfa)))
     (home-page "https://astropy.org/")
     (synopsis "Astronomy and astrophysics core library")
     (description
-- 
2.31.1