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Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 16 Mar 2021 13:32:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 47171 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: Ricardo Wurmus Cc: 47171@debbugs.gnu.org, Leo Famulari Received: via spool by 47171-submit@debbugs.gnu.org id=B47171.161590147325662 (code B ref 47171); Tue, 16 Mar 2021 13:32:01 +0000 Received: (at 47171) by debbugs.gnu.org; 16 Mar 2021 13:31:13 +0000 Received: from localhost ([127.0.0.1]:38541 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lM9mz-0006fp-5H for submit@debbugs.gnu.org; Tue, 16 Mar 2021 09:31:13 -0400 Received: from mail-qt1-f174.google.com ([209.85.160.174]:41556) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lM9mx-0006fd-Na for 47171@debbugs.gnu.org; Tue, 16 Mar 2021 09:31:12 -0400 Received: by mail-qt1-f174.google.com with SMTP id x9so11590586qto.8 for <47171@debbugs.gnu.org>; 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Tue, 16 Mar 2021 06:31:04 -0700 (PDT) MIME-Version: 1.0 References: <20210315180714.8233-1-zimon.toutoune@gmail.com> <87pn00m4ig.fsf@elephly.net> <87h7lbme0c.fsf@elephly.net> In-Reply-To: <87h7lbme0c.fsf@elephly.net> From: zimoun Date: Tue, 16 Mar 2021 14:30:53 +0100 Message-ID: Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Migadu-Flow: FLOW_IN ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1615901543; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:cc:mime-version:mime-version: content-type:content-type: content-transfer-encoding:content-transfer-encoding:resent-cc: resent-from:resent-sender:resent-message-id:in-reply-to:in-reply-to: references:references:list-id:list-help:list-unsubscribe: list-subscribe:list-post:dkim-signature; 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spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Spam-Score: -1.30 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20161025 header.b=E27W73XQ; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Queue-Id: CAE9D1A0CB X-Spam-Score: -1.30 X-Migadu-Scanner: scn0.migadu.com X-TUID: vMgReBEkxD/p Hi, On Tue, 16 Mar 2021 at 14:20, Ricardo Wurmus wrote: > zimoun writes: > > > Well, thanks for the report and I confirm that adding the bioconductor > > import in cran fixes "guix pull". But in my memories, this import > > was adding circular dependency. Ricardo, WDYT? > > The point of having (gnu packages cran) and (gnu packages bioconductor) > be separate modules is to separate independent packages. > > I=E2=80=99d like to keep it that way and not let (gnu packages cran) depe= nd on > (gnu packages bioconductor). Therefore, the fix is to move the CRAN r-bisquerna and r-absfiltergsea packages from (gnu packages cran) to (gnu packages bioconductor) because they depend on the Bioconductor package r-biobase (and r-limma). Right? How do I proceed? Submit a patch moving these 2 packages and then another patch reverting the revert? Thanks, simon