From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp0 ([2001:41d0:8:6d80::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id wE0AODfiUGBHUwAA0tVLHw (envelope-from ) for ; Tue, 16 Mar 2021 16:52:07 +0000 Received: from aspmx1.migadu.com ([2001:41d0:8:6d80::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp0 with LMTPS id iADaMzfiUGApPwAA1q6Kng (envelope-from ) for ; Tue, 16 Mar 2021 16:52:07 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id 85F4D2DB86 for ; Tue, 16 Mar 2021 17:52:07 +0100 (CET) Received: from localhost ([::1]:60378 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lMCvO-0004um-NS for larch@yhetil.org; Tue, 16 Mar 2021 12:52:06 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:45632) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lMCgp-0004PO-Aj for guix-patches@gnu.org; Tue, 16 Mar 2021 12:37:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:57566) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1lMCgo-0001CU-Gv for guix-patches@gnu.org; Tue, 16 Mar 2021 12:37:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1lMCgo-0003QO-El for guix-patches@gnu.org; Tue, 16 Mar 2021 12:37:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#47171] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor). Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 16 Mar 2021 16:37:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 47171 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: Ricardo Wurmus Cc: 47171@debbugs.gnu.org, Leo Famulari Received: via spool by 47171-submit@debbugs.gnu.org id=B47171.161591258413111 (code B ref 47171); Tue, 16 Mar 2021 16:37:02 +0000 Received: (at 47171) by debbugs.gnu.org; 16 Mar 2021 16:36:24 +0000 Received: from localhost ([127.0.0.1]:40879 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lMCgB-0003PP-Oo for submit@debbugs.gnu.org; Tue, 16 Mar 2021 12:36:24 -0400 Received: from mail-qk1-f180.google.com ([209.85.222.180]:46086) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lMCg9-0003P9-MH for 47171@debbugs.gnu.org; Tue, 16 Mar 2021 12:36:23 -0400 Received: by mail-qk1-f180.google.com with SMTP id a9so35815027qkn.13 for <47171@debbugs.gnu.org>; 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Tue, 16 Mar 2021 09:36:16 -0700 (PDT) MIME-Version: 1.0 References: <20210315180714.8233-1-zimon.toutoune@gmail.com> <87pn00m4ig.fsf@elephly.net> <87h7lbme0c.fsf@elephly.net> <87eegfm689.fsf@elephly.net> In-Reply-To: <87eegfm689.fsf@elephly.net> From: zimoun Date: Tue, 16 Mar 2021 17:36:04 +0100 Message-ID: Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Migadu-Flow: FLOW_IN ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1615913527; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:cc:mime-version:mime-version: content-type:content-type: content-transfer-encoding:content-transfer-encoding:resent-cc: resent-from:resent-sender:resent-message-id:in-reply-to:in-reply-to: references:references:list-id:list-help:list-unsubscribe: list-subscribe:list-post:dkim-signature; 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dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20161025 header.b=Yi27XlV6; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Queue-Id: 85F4D2DB86 X-Spam-Score: 0.20 X-Migadu-Scanner: scn0.migadu.com X-TUID: 2bmbxEPKpcxK On Tue, 16 Mar 2021 at 17:08, Ricardo Wurmus wrote: > > Therefore, the fix is to move the CRAN r-bisquerna and r-absfiltergsea > > packages from (gnu packages cran) to (gnu packages bioconductor) > > because they depend on the Bioconductor package r-biobase (and > > r-limma). Right? > > Correct. We don=E2=80=99t want any CRAN packages to depend on Bioconduct= or > things. When this is unavoidable, though, we move them to (gnu packages > bioconductor) with a comment. Ok. > > How do I proceed? Submit a patch moving these 2 packages and then > > another patch reverting the revert? > > Sounds good. (You could do this all in the same issue.) By the same issue, do you mean the same guix-patches number? Or the same commit? Cheers, simon