From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp1 ([2001:41d0:2:bcc0::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id 4I4LOj2rUmBsFgAA0tVLHw (envelope-from ) for ; Thu, 18 Mar 2021 01:22:05 +0000 Received: from aspmx1.migadu.com ([2001:41d0:2:bcc0::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp1 with LMTPS id QIukNT2rUmBhegAAbx9fmQ (envelope-from ) for ; Thu, 18 Mar 2021 01:22:05 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id 463512339A for ; Thu, 18 Mar 2021 02:22:05 +0100 (CET) Received: from localhost ([::1]:49230 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lMhMS-0003WI-DO for larch@yhetil.org; Wed, 17 Mar 2021 21:22:04 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:59682) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lMgY8-0004eT-DB for guix-patches@gnu.org; Wed, 17 Mar 2021 20:30:04 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:32910) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1lMgY6-00035q-4S for guix-patches@gnu.org; Wed, 17 Mar 2021 20:30:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1lMgY6-0002yw-0s for guix-patches@gnu.org; Wed, 17 Mar 2021 20:30:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#47223] [PATCH] r-signac and r-chromstardata Resent-From: hong li Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Thu, 18 Mar 2021 00:30:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 47223 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 47223@debbugs.gnu.org X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.161602735911375 (code B ref -1); Thu, 18 Mar 2021 00:30:01 +0000 Received: (at submit) by debbugs.gnu.org; 18 Mar 2021 00:29:19 +0000 Received: from localhost ([127.0.0.1]:44454 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lMgXO-0002xO-4w for submit@debbugs.gnu.org; Wed, 17 Mar 2021 20:29:18 -0400 Received: from lists.gnu.org ([209.51.188.17]:37260) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lMgJJ-0002bA-Jb for submit@debbugs.gnu.org; Wed, 17 Mar 2021 20:14:46 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:56366) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lMgJJ-0001V3-AS for guix-patches@gnu.org; Wed, 17 Mar 2021 20:14:45 -0400 Received: from mail-lj1-x234.google.com ([2a00:1450:4864:20::234]:38732) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1lMgJE-0004N7-OZ for guix-patches@gnu.org; Wed, 17 Mar 2021 20:14:42 -0400 Received: by mail-lj1-x234.google.com with SMTP id s17so5374472ljc.5 for ; Wed, 17 Mar 2021 17:14:39 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=mime-version:from:date:message-id:subject:to; bh=2CsdfYvJ9AxLRZwjR8NBVv/VlmrLTZoD1cMOy8uDkPk=; b=HepRPxF8TeJ7rste+WVVNuB66RJrZeufXDKtMQ4NzjAdj2tcLGPp9an5uG8PUfdkKM br8FygcfM+mFJ+17KvfPSDyItPJm2J7AZKuBrIfww24ZIUZGS9+cC1MmVw3L+zOWDueX Jo0oYTmL7iMjLnvlpYgvtU/TVzXDpoA8HBb7P+g3E7FXEGfuJNKB87KCHoGE1rKt08JI ZtM7kVngw2ISIsb75StuTbWgicTKU5QcyIHeC7rAsuEsXTFgtXFjZLAXw2aI5s4n4SYl 3hhHX3UwfZy7L7KD2lWXY2sEOZ1GAiP4/3zN2Uf0efhnXEkcArDOObmYDHrTcD7DHgV9 gl9w== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:mime-version:from:date:message-id:subject:to; bh=2CsdfYvJ9AxLRZwjR8NBVv/VlmrLTZoD1cMOy8uDkPk=; b=ZRjYn9d26R+cCwyAL8MwP2yKTcXFtKjSTbkJfFzF8fFhq+LnUM+6rzf6iyeNkQ1ssH sz3UEoUveXbpqBgm0bES+U1fhF3wDG+MI/cC608uGXTrGYxpWOfULIHUsa0LrmeIIGmn ADBwnfD7GBt0RBinSvKWXovGLWnONPx8KYYCMsN7hSJRq8/4I7ssfOgzNRGf+GYEO3Vt lrcmZLnWFbVXa5Lb0j+NnctnQpPCfUZp4+kUQuI9+j6eI8ZWmb1vwcOA76WObHVYV9eD WwYLSQ4r7pLg/vkPOFtEieJRTORTv3110IHFwHARnhcVzpltAtBHv9GvLuQ/t3hNROXi E5RA== X-Gm-Message-State: AOAM5306Q0kEEpF2cEdTt1VVXuGmoC7DFTwVo34p6kbecy7QKykFQNon e4nOiLPdwReVfK0Nyo2xu6XlSpFE33zT+WovopwNi5qT8JY= X-Google-Smtp-Source: ABdhPJwKu/WXK3DAYgTmwdZjG9iOSTJwuDD1SZkBIPCpzG7JFgw7iGMY7mYfBt8sA0BWaIel56KUmclViumDtWwzdTE= X-Received: by 2002:a2e:9012:: with SMTP id h18mr3899870ljg.139.1616026477125; Wed, 17 Mar 2021 17:14:37 -0700 (PDT) MIME-Version: 1.0 From: hong li Date: Thu, 18 Mar 2021 01:14:25 +0100 Message-ID: Content-Type: multipart/alternative; boundary="0000000000001de91c05bdc47c1d" Received-SPF: pass client-ip=2a00:1450:4864:20::234; envelope-from=hongli520@gmail.com; helo=mail-lj1-x234.google.com X-Spam_score_int: -17 X-Spam_score: -1.8 X-Spam_bar: - X-Spam_report: (-1.8 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_ENVFROM_END_DIGIT=0.25, FREEMAIL_FROM=0.001, HTML_MESSAGE=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Mailman-Approved-At: Wed, 17 Mar 2021 20:29:16 -0400 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-Mailman-Approved-At: Wed, 17 Mar 2021 21:21:56 -0400 X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Migadu-Flow: FLOW_IN ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1616030525; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:mime-version:mime-version: content-type:content-type:resent-cc:resent-from:resent-sender: resent-message-id:list-id:list-help:list-unsubscribe:list-subscribe: list-post:dkim-signature; bh=2CsdfYvJ9AxLRZwjR8NBVv/VlmrLTZoD1cMOy8uDkPk=; b=a8+25n6zI2mKANGuH9gYXabbeaEjOQhZACzS73E9tSE5BcOfaFtjKj9NuuVpYwgmjnuXv2 Ff9K8pH5Wo8mPL5dGhmhZ04tqaZbQuZ5CBOwkyz1oEdRGkpIPT+JZSA/YL1B9dZRSCFjSz obO7YeT7psWQLhZOqaM9mne5YuABDhYJbgPHohnU0YimeOEaqQi83lrLQIZYB1juK3OYlz IQ4p/yE46QiG6FPAAxOBZkVerW9vUu6ctlu7kxmo4p8YoBBgzV0d9EhzP+/3dGkVV68WEC Q/NY+4efmvWVtOLz3CRYe4dIsd3EYqQXtOxaHPAszRsRNzsMax28JnHVQoQV/g== ARC-Seal: i=1; s=key1; d=yhetil.org; t=1616030525; a=rsa-sha256; cv=none; b=k7NW2xCcx20hO5szp2Ke93y9426yzzO8nOcpd5HxPPy0VwSXrp3xZxaaDD9/RyZ543IKMq alevUsIx16DUa/PGBmnkEiuQ4ycmYX3DPQxacuJQ+kzbxoPOYDYhwzGwqxfnQlXQQvRf4Y UbAAwAISpV+SM8IH3qo9BMot18Qivms0HwLk4jOrHnBrseDnmrYf+whvbxBdiaKrcoSHET C5q4w8K46RDMk6G2Ndw1tMqY/PQAaOEFWQQAli+kUJSbqQ9HVD8Pa/mk+DT8+20AKlqU9w yULMaS78HGs4jpvHBpV6mo/QdsMqOjVOVeC4zHb/zBxsohVtAWb7dmmJI47mcA== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20161025 header.b=HepRPxF8; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Spam-Score: -1.30 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20161025 header.b=HepRPxF8; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Queue-Id: 463512339A X-Spam-Score: -1.30 X-Migadu-Scanner: scn0.migadu.com X-TUID: H5wuYEhek7db --0000000000001de91c05bdc47c1d Content-Type: text/plain; charset="UTF-8" Dear Guixer, Can you please add these two r packages in guix? Thanks in advance. I am not sure how to create this patch, and this is what I did: guix import cran -a git -r 'https://github.com/timoast/signac/' (define-public r-signac (let ((commit "e0512d348adeda4a3f23a2e8f56d1fe09840e03c") (revision "1")) (package (name "r-signac") (version (git-version "1.1.1" revision commit)) (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/timoast/signac/") (commit commit))) (file-name (git-file-name name version)) (sha256 (base32 "1yihhrv7zs87ax61la1nb4y12lg3knraw4b20k5digbcwm8488lb")))) (properties `((upstream-name . "Signac"))) (build-system r-build-system) (inputs `(("zlib" ,zlib))) (propagated-inputs `(("r-annotationfilter" ,r-annotationfilter) ("r-biocgenerics" ,r-biocgenerics) ("r-biostrings" ,r-biostrings) ("r-biovizbase" ,r-biovizbase) ("r-data-table" ,r-data-table) ("r-dplyr" ,r-dplyr) ("r-fastmatch" ,r-fastmatch) ("r-future" ,r-future) ("r-future-apply" ,r-future-apply) ("r-genomeinfodb" ,r-genomeinfodb) ("r-genomicranges" ,r-genomicranges) ("r-ggbio" ,r-ggbio) ("r-ggforce" ,r-ggforce) ("r-ggplot2" ,r-ggplot2) ("r-ggrepel" ,r-ggrepel) ("r-ggseqlogo" ,r-ggseqlogo) ("r-iranges" ,r-iranges) ("r-irlba" ,r-irlba) ("r-lsa" ,r-lsa) ("r-matrix" ,r-matrix) ("r-patchwork" ,r-patchwork) ("r-pbapply" ,r-pbapply) ("r-rcpp" ,r-rcpp) ("r-rcpproll" ,r-rcpproll) ("r-rsamtools" ,r-rsamtools) ("r-s4vectors" ,r-s4vectors) ("r-scales" ,r-scales) ("r-seurat" ,r-seurat) ("r-seuratobject" ,r-seuratobject) ("r-stringi" ,r-stringi) ("r-tidyr" ,r-tidyr))) (home-page "https://github.com/timoast/signac/") (synopsis "Analysis of Single-Cell Chromatin Data") (description "This package provides a framework for the analysis and exploration of single-cell chromatin data. The 'Signac' package contains functions for quantifying single-cell chromatin data, computing per-cell quality control metrics, dimension reduction and normalization, visualization, and DNA sequence motif analysis. Reference: Stuart et al. (2020) .") (license expat)))) guix import cran -a git -r 'https://git.bioconductor.org/packages/chromstaR' (define-public r-chromstardata (package (name "r-chromstardata") (version "1.16.0") (source (origin (method url-fetch) (uri (bioconductor-uri "chromstaRData" version 'experiment)) (sha256 (base32 "0ph80d53598635bb8g61acg5rqwnj8644a0gh297r4hgbvwlflab")))) (properties `((upstream-name . "chromstaRData"))) (build-system r-build-system) (home-page "https://bioconductor.org/packages/chromstaRData") (synopsis "ChIP-seq data for Demonstration Purposes") (description "ChIP-seq data for demonstration purposes in the chromstaR package.") (license gpl3))) (define-public r-chromstar (let ((commit "16c0394a3a0857a050237d2b8b33cd02d92d6239") (revision "1")) (package (name "r-chromstar") (version (git-version "1.17.0" revision commit)) (source (origin (method git-fetch) (uri (git-reference (url "https://git.bioconductor.org/packages/chromstaR") (commit commit))) (file-name (git-file-name name version)) (sha256 (base32 "0wr6wlz3z3x21c25hgczalswicrqfhw00wmsa9jjd42w4hj5lkh9")))) (properties `((upstream-name . "chromstaR"))) (build-system r-build-system) (propagated-inputs `(("r-bamsignals" ,r-bamsignals) ("r-biocgenerics" ,r-biocgenerics) ("r-chromstardata" ,r-chromstardata) ("r-doparallel" ,r-doparallel) ("r-foreach" ,r-foreach) ("r-genomeinfodb" ,r-genomeinfodb) ("r-genomicalignments" ,r-genomicalignments) ("r-genomicranges" ,r-genomicranges) ("r-ggplot2" ,r-ggplot2) ("r-iranges" ,r-iranges) ("r-mvtnorm" ,r-mvtnorm) ("r-reshape2" ,r-reshape2) ("r-rsamtools" ,r-rsamtools) ("r-s4vectors" ,r-s4vectors))) (native-inputs `(("r-knitr" ,r-knitr))) (home-page "https://git.bioconductor.org/packages/chromstaR") (synopsis "Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data") (description "This package implements functions for combinatorial and differential analysis of ChIP-seq data. It includes uni- and multivariate peak-calling, export to genome browser viewable files, and functi ons for enrichment analyses.") (license artistic2.0)))) with best regards, Hong Li --0000000000001de91c05bdc47c1d Content-Type: text/html; charset="UTF-8" Content-Transfer-Encoding: quoted-printable
Dear Guixer,

Can you please add these two r pa= ckages in guix? Thanks in advance.
I am not sure how to create th= is patch, and this is what I did:

guix import cran -a git -r 'https://github.com/timoast/signac/'

(define-pu= blic r-signac
=C2=A0 (let ((commit
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0= "e0512d348adeda4a3f23a2e8f56d1fe09840e03c")
=C2=A0 =C2=A0 =C2= =A0 =C2=A0 (revision "1"))
=C2=A0 =C2=A0 (package
=C2=A0 = =C2=A0 =C2=A0 (name "r-signac")
=C2=A0 =C2=A0 =C2=A0 (version = (git-version "1.1.1" revision commit))
=C2=A0 =C2=A0 =C2=A0 (s= ource
=C2=A0 =C2=A0 =C2=A0 =C2=A0 (origin
=C2=A0 =C2=A0 =C2=A0 =C2=A0= =C2=A0 (method git-fetch)
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 (uri (git-= reference
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0= (url "https://github.co= m/timoast/signac/")
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 = =C2=A0 =C2=A0 =C2=A0(commit commit)))
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0= (file-name (git-file-name name version))
=C2=A0 =C2=A0 =C2=A0 =C2=A0 = =C2=A0 (sha256
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 (base32
=C2= =A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 "1yihhrv7zs87ax61la1nb4y= 12lg3knraw4b20k5digbcwm8488lb"))))
=C2=A0 =C2=A0 =C2=A0 (properties= `((upstream-name . "Signac")))
=C2=A0 =C2=A0 =C2=A0 (build-sy= stem r-build-system)
=C2=A0 =C2=A0 =C2=A0 (inputs `(("zlib" ,z= lib)))
=C2=A0 =C2=A0 =C2=A0 (propagated-inputs
=C2=A0 =C2=A0 =C2=A0 = =C2=A0 `(("r-annotationfilter" ,r-annotationfilter)
=C2=A0 =C2= =A0 =C2=A0 =C2=A0 =C2=A0 ("r-biocgenerics" ,r-biocgenerics)
= =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-biostrings" ,r-biostrings)=
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-biovizbase" ,r-biovizb= ase)
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-data-table" ,r-dat= a-table)
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-dplyr" ,r-dply= r)
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-fastmatch" ,r-fastma= tch)
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-future" ,r-future)=
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-future-apply" ,r-futur= e-apply)
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-genomeinfodb" = ,r-genomeinfodb)
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-genomicrang= es" ,r-genomicranges)
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-g= gbio" ,r-ggbio)
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-ggforce= " ,r-ggforce)
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-ggplot2&q= uot; ,r-ggplot2)
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-ggrepel&quo= t; ,r-ggrepel)
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-ggseqlogo&quo= t; ,r-ggseqlogo)
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-iranges&quo= t; ,r-iranges)
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-irlba" ,= r-irlba)
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-lsa" ,r-lsa)=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-matrix" ,r-matrix)
= =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-patchwork" ,r-patchwork)=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-pbapply" ,r-pbapply)
= =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-rcpp" ,r-rcpp)
=C2=A0 = =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-rcpproll" ,r-rcpproll)
=C2=A0 = =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-rsamtools" ,r-rsamtools)
=C2= =A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-s4vectors" ,r-s4vectors)
= =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-scales" ,r-scales)
=C2= =A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-seurat" ,r-seurat)
=C2=A0 = =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-seuratobject" ,r-seuratobject)=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-stringi" ,r-stringi)
= =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-tidyr" ,r-tidyr)))
=C2= =A0 =C2=A0 =C2=A0 (home-page "https://github.com/timoast/signac/")
=C2=A0 =C2=A0 =C2= =A0 (synopsis
=C2=A0 =C2=A0 =C2=A0 =C2=A0 "Analysis of Single-Cell = Chromatin Data")
=C2=A0 =C2=A0 =C2=A0 (description
=C2=A0 =C2=A0= =C2=A0 =C2=A0 "This package provides a framework for the analysis and= exploration of single-cell chromatin data.=C2=A0 The 'Signac' pack= age contains functions for quantifying single-cell chromatin data, computin= g per-cell quality control metrics, dimension reduction and normalization, = visualization, and DNA sequence motif analysis.=C2=A0 Reference: Stuart et = al. (2020) <doi:10.1101/2020.11.09.373613>.")
=C2=A0 =C2=A0 = =C2=A0 (license expat))))

guix im= port cran -a git -r 'https://git.bioconductor.org/packages/chromstaR'
(define-public r-chromstardata
=C2=A0 (package
=C2=A0 =C2=A0 (n= ame "r-chromstardata")
=C2=A0 =C2=A0 (version "1.16.0&quo= t;)
=C2=A0 =C2=A0 (source
=C2=A0 =C2=A0 =C2=A0 (origin
=C2=A0 =C2= =A0 =C2=A0 =C2=A0 (method url-fetch)
=C2=A0 =C2=A0 =C2=A0 =C2=A0 (uri (b= ioconductor-uri
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0&= quot;chromstaRData"
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 =C2=A0version
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0'experiment))
=C2=A0 =C2=A0 =C2=A0 =C2=A0 (sha256
=C2=A0 =C2= =A0 =C2=A0 =C2=A0 =C2=A0 (base32
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 "0ph80d53598635bb8g61acg5rqwnj8644a0gh297r4hgbvwlflab"))))=C2=A0 =C2=A0 (properties `((upstream-name . "chromstaRData")))<= br>=C2=A0 =C2=A0 (build-system r-build-system)
=C2=A0 =C2=A0 (home-page<= br>=C2=A0 =C2=A0 =C2=A0 "https://bioconductor.org/packages/chromstaRData")=C2=A0 =C2=A0 (synopsis
=C2=A0 =C2=A0 =C2=A0 "ChIP-seq data for D= emonstration Purposes")
=C2=A0 =C2=A0 (description
=C2=A0 =C2=A0= =C2=A0 "ChIP-seq data for demonstration purposes in the chromstaR pac= kage.")
=C2=A0 =C2=A0 (license gpl3)))

(define-public r-chro= mstar
=C2=A0 (let ((commit
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 "1= 6c0394a3a0857a050237d2b8b33cd02d92d6239")
=C2=A0 =C2=A0 =C2=A0 =C2= =A0 (revision "1"))
=C2=A0 =C2=A0 (package
=C2=A0 =C2=A0 = =C2=A0 (name "r-chromstar")
=C2=A0 =C2=A0 =C2=A0 (version (git= -version "1.17.0" revision commit))
=C2=A0 =C2=A0 =C2=A0 (sour= ce
=C2=A0 =C2=A0 =C2=A0 =C2=A0 (origin
=C2=A0 =C2=A0 =C2=A0 =C2=A0 = =C2=A0 (method git-fetch)
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 (uri (git-r= eference
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0(= url "https= ://git.bioconductor.org/packages/chromstaR")
=C2=A0 =C2=A0 =C2= =A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0(commit commit)))
=C2=A0 = =C2=A0 =C2=A0 =C2=A0 =C2=A0 (file-name (git-file-name name version))
=C2= =A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 (sha256
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 =C2=A0 (base32
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 &quo= t;0wr6wlz3z3x21c25hgczalswicrqfhw00wmsa9jjd42w4hj5lkh9"))))
=C2=A0 = =C2=A0 =C2=A0 (properties `((upstream-name . "chromstaR")))
= =C2=A0 =C2=A0 =C2=A0 (build-system r-build-system)
=C2=A0 =C2=A0 =C2=A0 = (propagated-inputs
=C2=A0 =C2=A0 =C2=A0 =C2=A0 `(("r-bamsignals&quo= t; ,r-bamsignals)
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-biocgeneri= cs" ,r-biocgenerics)
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-ch= romstardata" ,r-chromstardata)
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 (= "r-doparallel" ,r-doparallel)
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 ("r-foreach" ,r-foreach)
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2= =A0 ("r-genomeinfodb" ,r-genomeinfodb)
=C2=A0 =C2=A0 =C2=A0 = =C2=A0 =C2=A0 ("r-genomicalignments" ,r-genomicalignments)
=C2= =A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-genomicranges" ,r-genomicrang= es)
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-ggplot2" ,r-ggplot2= )
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-iranges" ,r-iranges)<= br>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-mvtnorm" ,r-mvtnorm)=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-reshape2" ,r-reshape2)=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-rsamtools" ,r-rsamtools)<= br>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ("r-s4vectors" ,r-s4vectors= )))
=C2=A0 =C2=A0 =C2=A0 (native-inputs `(("r-knitr" ,r-knitr)= ))
=C2=A0 =C2=A0 =C2=A0 (home-page
=C2=A0 =C2=A0 =C2=A0 =C2=A0 "= https://git.bio= conductor.org/packages/chromstaR")
=C2=A0 =C2=A0 =C2=A0 (synops= is
=C2=A0 =C2=A0 =C2=A0 =C2=A0 "Combinatorial and Differential Chro= matin State Analysis for ChIP-Seq Data")
=C2=A0 =C2=A0 =C2=A0 (desc= ription
=C2=A0 =C2=A0 =C2=A0 =C2=A0 "This package implements functi= ons for combinatorial and differential analysis of ChIP-seq data.=C2=A0 It = includes uni- and multivariate peak-calling, export to genome browser viewa= ble files, and functi
ons for enrichment analyses.")
=C2=A0= =C2=A0 =C2=A0 (license artistic2.0))))

with best = regards,
Hong Li
--0000000000001de91c05bdc47c1d--