[bug#67237] [PATCH 00/32] gnu: Astronomy 2023/11 updates.

[bug#67237] [PATCH 00/32] gnu: Astronomy 2023/11 updates.

[Sharlatan Hellseher]

Hi Guix!

Please review November's patch series updating and improving packages related
to (gnu packages astronomy).

To Update python-spherical-geometry there is pending QD update in
https://issues.guix.gnu.org/66896 which needs to be placed first reported
upstream https://github.com/spacetelescope/spherical_geometry/issues/227 and
solved with new QD

Tested on x86_64-linux system, and they do not introduce any regressions.

> ./pre-inst-env guix build --rounds=2 python-stsci-stimage python-synphot python-memory-profiler python-pytest-socket parfive python-poliastro python-extension-helpers python-astroquery python-stsci-imagestats python-drms splash python-wiimatch python-sgp4 python-roman-datamodels python-rad python-pynbody python-posix-ipc python-jplephem python-fitsio python-crds python-casa-formats-io python-astroalign python-asdf libpasastro gpredict celestia
/gnu/store/h3fg00sdrqyipx92jjq260xbjfqy5vzj-celestia-1.6.4
/gnu/store/1m28grg2cmhx16bfkgm62nxpkfj5mabm-gpredict-2.2.1
/gnu/store/7n7piap15awvdflqba5dnw670z8bk74z-libpasastro-1.4.1
/gnu/store/inq664xkx31v4pwhaqd25h94jqhyjy7j-python-asdf-3.0.1
/gnu/store/5fl0byrld8wkxz2r3d72yrywm3iy6lya-python-astroalign-2.5.1
/gnu/store/6ik6bzmy91l56gbxscxlrls7nfs4l031-python-casa-formats-io-0.2.2
/gnu/store/vh8a6aakb679zs2n4asmgr7g0rkk8r9x-python-crds-11.17.9
/gnu/store/3pfhsdbm79ra4ipvml2wzlmgn971qjas-python-fitsio-1.2.1
/gnu/store/dlfyxnr2g720ghl5g9ginvrjh0spiqgc-python-jplephem-2.20
/gnu/store/59sa9gj5s1mr3jawiax7vz6y6wplylaq-python-posix-ipc-1.1.1
/gnu/store/v212kaws8m4s5r8l23qvfcwjzc713v6v-python-pynbody-1.4.2
/gnu/store/g0g67cfihrf1vnhrazrh9g48xlyavbph-python-rad-0.18.0
/gnu/store/cg50p4yh0nxxy0ng9i9gw3hramn20l2q-python-roman-datamodels-0.18.0
/gnu/store/w0w81qy9j3fl66w4mifrqm4bdf4x8vbd-python-sgp4-2.23
/gnu/store/b59mr6y67xcg4xzysj8fbj7k1b2rsd77-python-wiimatch-0.3.2
/gnu/store/g716pwqcq9wnwgzxd8lp1gcjci16d59r-splash-3.9.0
/gnu/store/3xvl3byxy3a1hr0bnhddig0zkdl2vyxy-python-drms-0.6.4
/gnu/store/acpfhn8d14rhnha50vg67n1d1xrski88-python-stsci-imagestats-1.6.3
/gnu/store/ibshda7w2bs3cl6vixrpzazbh30fhb1j-python-astroquery-0.4.6
/gnu/store/b5nr8hkxf5fvyjaaabnajiwz58zpv9fl-python-extension-helpers-1.1.0
/gnu/store/5764g4i2wvyfqm15kz38gnsdsvwwgpl0-python-poliastro-0.17.0
/gnu/store/s1b603437aph8jawhcajrk9qgqbkl13m-parfive-2.0.2
/gnu/store/8yf8102qkrxy2lznx1xscxdxhkv3gd0h-python-pytest-socket-0.6.0
/gnu/store/2b4d4kv8ilrjgd7apr0nb3yx8z12v15f-python-memory-profiler-0.61
/gnu/store/n6fd3b4lskfsgnfxc4kisrkp0cv73jc6-python-synphot-1.2.1
/gnu/store/0i341ilw7x4mvshlhbxdc8ks1417sd70-python-stsci-stimage-0.2.6

Building the following 8 packages would ensure 53 dependent packages are
rebuilt: python-pynbody@1.4.2 python-asdf@3.0.1 python-poliastro@0.17.0
python-astroalign@2.5.1 python-tslearn@0.6.2 python-sunpy@5.0.1
python-jwst@1.12.5 python-spectral-cube@0.6.3

./pre-inst-env guix build python-pynbody@1.4.2 python-asdf@3.0.1 python-poliastro@0.17.0 python-astroalign@2.5.1 python-tslearn@0.6.2 python-sunpy@5.0.1 python-jwst@1.12.5 python-spectral-cube@0.6.3
/gnu/store/9xvnxvsf3w8n5wbymmdxx1v54bfqllhh-python-spectral-cube-0.6.3
/gnu/store/nkq1sppm8j5gdhxl6x34mia105zs7gkg-python-jwst-1.12.5
/gnu/store/vpkbyzd2q1klxmh3mf196mii3svnz1wn-python-sunpy-5.0.1
/gnu/store/mbbdr29ag8djlpp7g8q1cxbdgjr51ncc-python-tslearn-0.6.2
/gnu/store/5fl0byrld8wkxz2r3d72yrywm3iy6lya-python-astroalign-2.5.1
/gnu/store/5764g4i2wvyfqm15kz38gnsdsvwwgpl0-python-poliastro-0.17.0
/gnu/store/inq664xkx31v4pwhaqd25h94jqhyjy7j-python-asdf-3.0.1
/gnu/store/v212kaws8m4s5r8l23qvfcwjzc713v6v-python-pynbody-1.4.2

Sharlatan Hellseher (32):
  gnu: celestia: Update to 1.6.4.
  gnu: gpredict: Improve package style.
  gnu: libpasastro: Update to 1.4.1.
  gnu: python-asdf-3.0: Update to 3.0.1.
  gnu: python-astroalign: Update to 2.5.1.
  gnu: python-casa-formats-io: Update to 0.2.2.
  gnu: python-crds: Update to 11.17.9.
  gnu: python-fitsio: Update to 1.2.1.
  gnu: python-jplephem: Update to 2.20.
  gnu: python-posix-ipc: Update to 1.1.1.
  gnu: python-pynbody: Update to 1.4.2.
  gnu: python-pynbody: Prepare for cross compilation.
  gnu: python-rad: Update to 0.18.0.
  gnu: python-roman-datamodels: Update to 0.18.0.
  gnu: python-sgp4: Update to 2.23.
  gnu: python-wiimatch: Update to 0.3.2.
  gnu: splash: Update to 3.9.0.
  gnu: python-drms: Simplify package.
  gnu: python-stsci-imagestats: Swap to pyproject-build-system.
  gnu: python-astroquery: Improve package style.
  gnu: python-extension-helpers: Enable tests.
  gnu: python-extension-helpers: Improve style.
  gnu: python-extension-helpers: Update to 1.1.0.
  gnu: python-poliastro: Improve package style.
  gnu: parfive: Update to 2.0.2.
  gnu: parfive: Improve package style.
  gnu: python-pytest-socket: Update to 0.6.0.
  gnu: python-pytest-socket: Enable tests.
  gnu: python-memory-profiler: Enable all tests.
  gnu: python-synphot: Enable tests.
  gnu: python-stsci-stimage: Enable tests.
  gnu: python-posix-ipc: Limit tests to target-x86.

 gnu/packages/astronomy.scm    | 281 ++++++++++++++++++----------------
 gnu/packages/python-check.scm |  70 +++------
 gnu/packages/python-web.scm   |  23 ++-
 gnu/packages/python-xyz.scm   |  72 +++++----
 4 files changed, 224 insertions(+), 222 deletions(-)


base-commit: a0d337e79c87d7c38c79d0291974f490cb137a52
-- 
2.41.0

[bug#67237] [PATCH 01/32] gnu: celestia: Update to 1.6.4.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (celestia): Update to 1.6.4.

Change-Id: I581bb402e78584b526d83050cfedb4e8d26a6115
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 47913a1282..386a5302d6 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1385,7 +1385,7 @@ (define-public swarp
 (define-public celestia
   (package
     (name "celestia")
-    (version "1.6.3")
+    (version "1.6.4")
     (source
      (origin
        (method git-fetch)
@@ -1394,7 +1394,7 @@ (define-public celestia
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0dzci5n7gcnm1vq916gsn9zddkhbzhbsakqxrpnmvzibsqznn6c8"))))
+        (base32 "0nz9k5nd2zmrbwj1qhsfwmvqymqk8c4yjxpybck44isrild2ah9j"))))
     (build-system gnu-build-system)
     (arguments
      (list
-- 
2.41.0

[bug#67237] [PATCH 02/32] gnu: gpredict: Improve package style.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (gpredict): Improve package style. Reorder
fields to be similar with others to ease review.
[native-inputs]: Remove labels.
[arguments]: Use G-expressions. Drop trailing #t in phases.

Change-Id: I0e0216825ce2c9e77632a43dd604ab4abbdf3e83
---
 gnu/packages/astronomy.scm | 27 ++++++++++++---------------
 1 file changed, 12 insertions(+), 15 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 386a5302d6..e03660969b 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3153,23 +3153,21 @@ (define-public gpredict
        (sha256
         (base32 "0hwf97kng1zy8rxyglw04x89p0bg07zq30hgghm20yxiw2xc8ng7"))))
     (build-system gnu-build-system)
+    (arguments
+     (list
+      #:configure-flags #~(list "CFLAGS=-O2 -g -fcommon")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'fix-tests
+            (lambda _
+              ;; Remove reference to non-existent file.
+              (substitute* "po/POTFILES.in"
+                (("src/gtk-sat-tree\\.c") "")))))))
     (native-inputs
-     `(("intltool" ,intltool)
-       ("gettext" ,gettext-minimal)
-       ("pkg-config" ,pkg-config)))
+     (list gettext-minimal intltool pkg-config))
     (inputs
      (list curl glib goocanvas gtk+))
-    (arguments
-     `(#:configure-flags '("CFLAGS=-O2 -g -fcommon")
-       #:phases
-       (modify-phases %standard-phases
-         (add-after 'unpack 'fix-tests
-           (lambda _
-             ;; Remove reference to non-existent file.
-             (substitute* "po/POTFILES.in"
-               (("src/gtk-sat-tree\\.c")
-                ""))
-             #t)))))
+    (home-page "http://gpredict.oz9aec.net/index.php")
     (synopsis "Satellite tracking and orbit prediction application")
     (description
      "Gpredict is a real-time satellite tracking and orbit prediction
@@ -3177,7 +3175,6 @@ (define-public gpredict
 position and other data in lists, tables, maps, and polar plots (radar view).
 Gpredict can also predict the time of future passes for a satellite, and
 provide you with detailed information about each pass.")
-    (home-page "http://gpredict.oz9aec.net/index.php")
     (license license:gpl2+)))
 
 (define-public sgp4
-- 
2.41.0

[bug#67237] [PATCH 03/32] gnu: libpasastro: Update to 1.4.1.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (libpasastro): Update to 1.4.1.

Change-Id: I8ad8e9c23c08897f84cbf0b35c1197320bbdeb86
---
 gnu/packages/astronomy.scm | 74 ++++++++++++++++++--------------------
 1 file changed, 35 insertions(+), 39 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index e03660969b..ed68bd483a 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2974,44 +2974,40 @@ (define-public libskry
     (license license:gpl3+)))
 
 (define-public libpasastro
-  ;; NOTE: (Sharlatan-20210122T215921+0000): the version tag has a build
-  ;; error on spice which is resolved with the latest commit.
-  (let ((commit "e3c218d1502a18cae858c83a9a8812ab197fcb60")
-        (revision "1"))
-    (package
-      (name "libpasastro")
-      (version (git-version "1.4.0" revision commit))
-      (source (origin
-                (method git-fetch)
-                (uri (git-reference
-                      (url "https://github.com/pchev/libpasastro")
-                      (commit commit)))
-                (file-name (git-file-name name version))
-                (sha256
-                 (base32
-                  "0asp2sn34nds5va2ghppwc41vb6j3d1mf049j949rgrll817kx47"))))
-      (build-system gnu-build-system)
-      (arguments
-       `(#:tests? #f
-         #:make-flags
-         (list
-          ,(match (or (%current-target-system) (%current-system))
-             ((or "aarch64-linux" "armhf-linux" "i686-linux" "x86_64-linux")
-              "OS_TARGET=linux")
-             (_ #f))
-          ,(match (or (%current-target-system) (%current-system))
-             ("i686-linux" "CPU_TARGET=i386")
-             ("x86_64-linux" "CPU_TARGET=x86_64")
-             ((or "armhf-linux" "aarch64-linux") "CPU_TARGET=armv7l")
-             (_ #f))
-          (string-append "PREFIX=" (assoc-ref %outputs "out")))
-         #:phases
-         (modify-phases %standard-phases
-           (delete 'configure))))
-      (home-page "https://github.com/pchev/libpasastro")
-      (synopsis "Interface to astronomy library for use from Pascal program")
-      (description
-       "This package provides shared libraries to interface Pascal program with
+  (package
+    (name "libpasastro")
+    (version "1.4.1")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/pchev/libpasastro")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1h92p9ph3zi4w8krny1azd9wgwna2nf07ims983jcky1chkfm0is"))))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:tests? #f
+       #:make-flags
+       (list
+        ,(match (or (%current-target-system) (%current-system))
+           ((or "aarch64-linux" "armhf-linux" "i686-linux" "x86_64-linux")
+            "OS_TARGET=linux")
+           (_ #f))
+        ,(match (or (%current-target-system) (%current-system))
+           ("i686-linux" "CPU_TARGET=i386")
+           ("x86_64-linux" "CPU_TARGET=x86_64")
+           ((or "armhf-linux" "aarch64-linux") "CPU_TARGET=armv7l")
+           (_ #f))
+        (string-append "PREFIX=" (assoc-ref %outputs "out")))
+       #:phases
+       (modify-phases %standard-phases
+         (delete 'configure))))
+    (home-page "https://github.com/pchev/libpasastro")
+    (synopsis "Interface to astronomy library for use from Pascal program")
+    (description
+     "This package provides shared libraries to interface Pascal program with
 standard astronomy libraries:
 
 @itemize
@@ -3020,7 +3016,7 @@ (define-public libpasastro
 @item @code{libpaswcs.so}: Interface with libwcs to work with FITS WCS.
 @item @code{libpasspice.so}: To work with NAIF/SPICE kernel.
 @end itemize\n")
-      (license license:gpl2+))))
+      (license license:gpl2+)))
 
 (define-public libxisf
   (package
-- 
2.41.0

[bug#67237] [PATCH 04/32] gnu: python-asdf-3.0: Update to 3.0.1.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-asdf-3.0): Update to 3.0.1.

Change-Id: Icd6e1c048cad82d5cad25c5638b8300f438116b0
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index ed68bd483a..522d62a05e 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3765,13 +3765,13 @@ (define-public python-tweakwcs
 (define-public python-asdf-3.0
   (package
     (name "python-asdf")
-    (version "3.0.0")
+    (version "3.0.1")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "asdf" version))
        (sha256
-        (base32 "1a6lf75q9w8fsyq3hn6a7fyldkkyqxddlq21fwdfjwij40dzh3s8"))))
+        (base32 "1jsk7b4mx04l0a08j832vnl309dba3gjnha9mbd61dzs9ridrfna"))))
     (build-system pyproject-build-system)
     (native-inputs
      (list python-fsspec
-- 
2.41.0

[bug#67237] [PATCH 05/32] gnu: python-astroalign: Update to 2.5.1.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-astroalign): Update to 2.5.1.

Change-Id: If850a659270c8a3640bd20382f5b5fb05b998594
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 522d62a05e..5dfdd6f0d8 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4216,7 +4216,7 @@ (define-public python-roman-datamodels
 (define-public python-astroalign
   (package
     (name "python-astroalign")
-    (version "2.5.0")
+    (version "2.5.1")
     (source
      (origin
        ;; There are no tests in the PyPI tarball.
@@ -4226,7 +4226,7 @@ (define-public python-astroalign
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0br1v2l48jx214a1bcdr8wz1wggcswcbz4cqv8d19fd46fc4qlhy"))))
+        (base32 "1kr5cszcxvrdbksy7mvv3ps1h1jzrn4yamfr6x7whkbi6bpqf7xp"))))
     (build-system pyproject-build-system)
     (native-inputs
      (list python-astropy
-- 
2.41.0

[bug#67237] [PATCH 06/32] gnu: python-casa-formats-io: Update to 0.2.2.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-casa-formats-io): Update to 0.2.2.

Change-Id: I1a95f2e09fff36e1488302e5929fc405837f4cde
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 5dfdd6f0d8..cafb0d826a 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1726,13 +1726,13 @@ (define-public python-bayesicfitting
 (define-public python-casa-formats-io
   (package
     (name "python-casa-formats-io")
-    (version "0.2.1")
+    (version "0.2.2")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "casa-formats-io" version))
               (sha256
                (base32
-                "07cchih2ws6jf6q1a4xhkv0jk96s3w08kzxx9l1911wzqk0pw9pj"))))
+                "16qwr6yq86qgdb0lvnmfm5mn6g2d29b1vrmfv26v77kxm6szxr8h"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.41.0

[bug#67237] [PATCH 07/32] gnu: python-crds: Update to 11.17.9.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-crds): Update to 11.17.9.

Change-Id: Id493858c82ee6b52cb0a7f15a918349f305f9ad3
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index cafb0d826a..8519cfb6ac 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1835,13 +1835,13 @@ (define-public python-cdflib
 (define-public python-crds
   (package
     (name "python-crds")
-    (version "11.17.7")
+    (version "11.17.9")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "crds" version))
               (sha256
                (base32
-                "10cxhb1xss21p992bfd5jm8bix1n12h0fd8m5sp6bcsgn6zs94v0"))))
+                "0ha7ibs5lmqs9pcr546jyxzgrmx1xyqps7fsp220rvlsbsisdgm0"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.41.0

[bug#67237] [PATCH 08/32] gnu: python-fitsio: Update to 1.2.1.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-fitsio): Update to 1.2.1.

Change-Id: Icc28cc340bcd23958f17bb437a76c5cdc8e58383
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 8519cfb6ac..325eee6fc0 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -589,13 +589,13 @@ (define-public python-astroml
 (define-public python-fitsio
   (package
     (name "python-fitsio")
-    (version "1.2.0")
+    (version "1.2.1")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "fitsio" version))
        (sha256
-        (base32 "04fbg1ffj7qrlzw50xzzkfnlk6qjjqq96j0im7phprmwb1rbvzzh"))
+        (base32 "19him5rcpjyz14ghkmifnd1xl3ivlyy84h45k6j2pyr5ixc60ky6"))
        (modules '((guix build utils)))
        (snippet
         ;; Remove the bundled cfitsio. When update the package check the
-- 
2.41.0

[bug#67237] [PATCH 09/32] gnu: python-jplephem: Update to 2.20.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-jplephem): Update to 2.20.

Change-Id: Ie5100d1d6f790a15d5fef2f63f916c0e7063aa89
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 325eee6fc0..23a4d50df5 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3386,13 +3386,13 @@ (define-public sunclock
 (define-public python-jplephem
   (package
     (name "python-jplephem")
-    (version "2.19")
+    (version "2.20")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "jplephem" version))
        (sha256
-        (base32 "1kvdzwyh0invinvcnwfr14r9zbqzcwkdh0cpzw1m4vkdcm64aqn1"))))
+        (base32 "1yp1l3n07849411099f976ps0pyv8jk8k5l9da9nhv54ir86v65v"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.41.0

[bug#67237] [PATCH 10/32] gnu: python-posix-ipc: Update to 1.1.1.

[Sharlatan Hellseher]

* gnu/packages/python-xyz.scm (python-posix-ipc): Update to 1.1.1.

Change-Id: I3519bc025425ce6d5b15a830d6915d7322e54a1c
---
 gnu/packages/python-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index e521c1580d..318ce539db 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -32988,7 +32988,7 @@ (define-public python-queuelib
 (define-public python-posix-ipc
   (package
     (name "python-posix-ipc")
-    (version "1.0.5")
+    (version "1.1.1")
     (source
      (origin
        ;; The source distributed on PyPI is prebuild.
@@ -32998,7 +32998,7 @@ (define-public python-posix-ipc
              (commit (string-append "rel" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "17y4d0pmvp199c5hbs602ailhlh9f9zv89kmpbd8jhyl6rgaxsvs"))))
+        (base32 "1wwp0ys8640nb31syabic1z524r1qx3q2v8h4d65am3a728l5bn4"))))
     (build-system python-build-system)
     (arguments
      (list #:phases
-- 
2.41.0

[bug#67237] [PATCH 11/32] gnu: python-pynbody: Update to 1.4.2.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-pynbody): Update to 1.4.2.

Change-Id: I1ccfa506b3e1fc57b547ffc21059ee3f5547ce04
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 23a4d50df5..85180e40ad 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3530,7 +3530,7 @@ (define-public python-pyerfa
 (define-public python-pynbody
   (package
     (name "python-pynbody")
-    (version "1.4.1")
+    (version "1.4.2")
     (source
      (origin
        (method git-fetch) ;PyPi doesn't have not prebuit version.
@@ -3539,7 +3539,7 @@ (define-public python-pynbody
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1vl1yif3bsazcil6saghrpa4qsg47fnr7xnkjpqnp44b7ipww27r"))
+        (base32 "1lwjs8vf3pc4a64c93fa5k6r276g1c60722swns2r10ig1s4wk0a"))
        (modules '((guix build utils)))
        (snippet
         ;; Symlink goes to not existing directory.
-- 
2.41.0

[bug#67237] [PATCH 12/32] gnu: python-pynbody: Prepare for cross compilation.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-pynbody)[arguments]{phases}: Add
'set-compiler phase.

Change-Id: I64feabbdd76679d5a86a85a9f50cd0be90f60c1c
---
 gnu/packages/astronomy.scm | 7 ++++++-
 1 file changed, 6 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 85180e40ad..e42b87144c 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3575,7 +3575,12 @@ (define-public python-pynbody
                            "--ignore=tests/sph_smooth_test.py"
                            "--ignore=tests/subfind_test.py"
                            "--ignore=tests/subfindhdf_gadget4_test.py"
-                           "--ignore=tests/tipsy_test.py")))
+                           "--ignore=tests/tipsy_test.py")
+           #:phases
+           #~(modify-phases %standard-phases
+               (add-before 'build 'set-compiler
+                 (lambda _
+                   (setenv "CC" #$(cc-for-target)))))))
     (native-inputs
      (list python-cython
            python-pandas
-- 
2.41.0

[bug#67237] [PATCH 13/32] gnu: python-rad: Update to 0.18.0.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-rad): Update to 0.18.0.

Change-Id: I1e7ba8f99bce25ab5c719e82755505e32d0acf66
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index e42b87144c..edb3e33c19 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4115,13 +4115,13 @@ (define-public python-gwcs
 (define-public python-rad
   (package
     (name "python-rad")
-    (version "0.17.1")
+    (version "0.18.0")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "rad" version))
               (sha256
                (base32
-                "11jhh3qmd00g8sn6hcfshbpb2qy1rfj0xkxn30pd63lqazg4ra3p"))))
+                "1wgnbhldgq0j55yzg33y11vd5k5nzwckiccxywvmq518qh19pky5"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.41.0

[bug#67237] [PATCH 14/32] gnu: python-roman-datamodels: Update to 0.18.0.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-roman-datamodels): Update to 0.18.0.

Change-Id: Ic60c1cd7574cba42bfb29069283d90804775f583
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index edb3e33c19..136c9bb2f6 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4177,13 +4177,13 @@ (define-public python-radio-beam
 (define-public python-roman-datamodels
   (package
     (name "python-roman-datamodels")
-    (version "0.17.1")
+    (version "0.18.0")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "roman_datamodels" version))
               (sha256
                (base32
-                "1y12cp8172i4a314gmhpi86jw6pfylz1adh0rzr5zqmvd3mrjqlj"))))
+                "0crlmd99p2nyqmrbykdqqng7v8zb4sibm8j9aqrq3ppak3r3r7q1"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.41.0

[bug#67237] [PATCH 15/32] gnu: python-sgp4: Update to 2.23.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-sgp4): Update to 2.23.

Change-Id: I135ef49c969e3bbc1635f9df966953fbc9bb0c67
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 136c9bb2f6..28fdf66855 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2373,13 +2373,13 @@ (define-public python-reproject
 (define-public python-sgp4
   (package
     (name "python-sgp4")
-    (version "2.22")
+    (version "2.23")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "sgp4" version))
        (sha256
-        (base32 "1yc6gcbhz80i875j0wf6ikx7rzs0m7m1qp72dmdhdjidmpma5w0p"))))
+        (base32 "0aalbmldks6ykgkcxwkvnp04q0avhv903m5zwvg8i7zvl99xrbfq"))))
     (build-system python-build-system)
     (propagated-inputs
      (list python-numpy))
-- 
2.41.0

[bug#67237] [PATCH 16/32] gnu: python-wiimatch: Update to 0.3.2.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-wiimatch): Update to 0.3.2.

Change-Id: I2344c4b7e90e2652393b89c8e2bdf83644d0c711
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 28fdf66855..a5f1e99262 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4279,13 +4279,13 @@ (define-public python-skyfield
 (define-public python-wiimatch
   (package
     (name "python-wiimatch")
-    (version "0.3.1")
+    (version "0.3.2")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "wiimatch" version))
               (sha256
                (base32
-                "0x6p5z6a2cqinckwlpinjxagvmswl149s1jn6ihmdxk4k0h8rrz0"))))
+                "15kq7z30m9i286ncs9xvpaq3dq1p5fa47jz21prq146qwr7j6dm8"))))
     (build-system pyproject-build-system)
     (propagated-inputs (list python-numpy python-scipy))
     (native-inputs (list python-codecov python-pytest python-pytest-cov
-- 
2.41.0

[bug#67237] [PATCH 17/32] gnu: splash: Update to 3.9.0.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (splash): Update to 3.9.0.

Change-Id: Ic7fdf1cd8aacfec00777075440b4f53adfe37d22
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index a5f1e99262..fa3ad52350 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1121,7 +1121,7 @@ (define-public siril
 (define-public splash
   (package
     (name "splash")
-    (version "3.8.4")
+    (version "3.9.0")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -1129,7 +1129,7 @@ (define-public splash
                     (commit (string-append "v" version))))
               (sha256
                (base32
-                "1l18sqz5mpab9wb5hlbfy18wfwq6fpijc3p9wa5bv6lrcymvpirp"))
+                "19r5j4jrxhp3gf865ns59vvfnn5a303dqgmb8y2kgcsx26fci1hs"))
               (file-name (git-file-name name version))))
     (build-system gnu-build-system)
     (arguments
-- 
2.41.0

[bug#67237] [PATCH 18/32] gnu: python-drms: Simplify package.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-drms): Simplify package.
[build-system]: Swap to pyproject-build-system.
[arguments]: Drop them.

Change-Id: I9d8e82e63b850b220489454ba984f22f4cad3ad3
---
 gnu/packages/astronomy.scm | 13 +------------
 1 file changed, 1 insertion(+), 12 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index fa3ad52350..523030a0f7 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1924,18 +1924,7 @@ (define-public python-drms
        (uri (pypi-uri "drms" version))
        (sha256
         (base32 "0mkrmr55fgca441z7hvsyri6x9cjsh0sfas3hrj0k1k10k8vszbw"))))
-    (build-system python-build-system)
-    (arguments
-     (list
-      #:phases
-      #~(modify-phases %standard-phases
-          (replace 'check
-            (lambda* (#:key inputs outputs tests?
-                      #:allow-other-keys)
-              (when tests?
-                (add-installed-pythonpath inputs outputs)
-                (setenv "JSOC_EMAIL" "jsoc@sunpy.org")
-                (invoke "python" "-m" "pytest" "-vv")))))))
+    (build-system pyproject-build-system)
     (native-inputs
      (list python-astropy
            python-pytest-astropy
-- 
2.41.0

[bug#67237] [PATCH 19/32] gnu: python-stsci-imagestats: Swap to pyproject-build-system.

[Sharlatan Hellseher]

The next release of the package will include test suite based on
python-pytest, prepare for that.

* gnu/packages/astronomy.scm (python-stsci-imagestats)[build-system]:
Swap to python-stsci-imagestats.

Change-Id: I5a70ef744ac7ad46f9e4474d84661b6b15028c9b
---
 gnu/packages/astronomy.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 523030a0f7..e9caced125 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2663,7 +2663,7 @@ (define-public python-stsci-imagestats
               (sha256
                (base32
                 "14457izlbnks84dyza75ib3nvx2w8nhlqm9vc1zb7hbhknb5gjvw"))))
-    (build-system python-build-system)
+    (build-system pyproject-build-system)
     (arguments
      (list #:tests? #f)) ;No tests
     (propagated-inputs (list python-numpy))
-- 
2.41.0

[bug#67237] [PATCH 20/32] gnu: python-astroquery: Improve package style.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-astroquery): Improve package style.
[build-system]: Swap to pyproject-build-system.
[arguments]{phases}: Rename 'writable-home phase to
'prepare-test-environment to reflect the purpose, Add extra step
configuring Pytest.
[native-inputs]: Remove python-flask, python-jinja2. Add
python-astropy-healpix, python-regions.

Change-Id: Id3909a13e451a2f9d5f4f28511e9f04c6bceb738
---
 gnu/packages/astronomy.scm | 41 +++++++++++++++++++++++---------------
 1 file changed, 25 insertions(+), 16 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index e9caced125..d12dccc208 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1614,19 +1614,27 @@ (define-public python-astroquery
        (uri (pypi-uri "astroquery" version))
        (sha256
         (base32 "1vhkzsqlgn3ji5by2rdf2gwklhbyzvpzb1iglalhqjkkrdaaaz1h"))))
-    (build-system python-build-system)
+    (build-system pyproject-build-system)
     (arguments
-     (list #:phases
-           #~(modify-phases %standard-phases
-               (add-before 'check 'writable-home
-                 (lambda _              ; some tests need a writable home
-                   (setenv "HOME" (getcwd))))
-               (replace 'check
-                 (lambda* (#:key tests? #:allow-other-keys)
-                   (when tests?
-                     (invoke "python" "-m" "pytest" "--pyargs" "astroquery"
-                             ;; Skip tests that require online data.
-                             "-m" "not remote_data")))))))
+     (list
+      #:test-flags
+      #~(list "--pyargs" "astroquery"
+              "-m" "not remote_data")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'check 'prepare-test-environment
+            (lambda _
+              (setenv "HOME" (getcwd)) ; some tests need a writable home
+              ;; To solve pytest/conftest issue. Pytest tries to load all
+              ;; files with word 'test' in them.
+              ;;
+              ;; ImportError while loading conftest ...
+              ;; _pytest.pathlib.ImportPathMismatchError: ...
+              ;;
+              (call-with-output-file "pytest.ini"
+                (lambda (port)
+                  (format port "[pytest]
+python_files = test_*.py"))))))))
     (propagated-inputs
      (list python-astropy
            python-beautifulsoup4
@@ -1636,12 +1644,13 @@ (define-public python-astroquery
            python-pyvo
            python-requests))
     (native-inputs
-     (list python-flask
-           python-jinja2
+     (list python-astropy-healpix
            python-matplotlib
+           ;; python-mocpy : Not packed yet, optional
            python-pytest-astropy
-           python-pytest-dependency))
-    (home-page "https://www.astropy.org/astroquery/")
+           python-pytest-dependency
+           python-regions))
+    (home-page "https://astroquery.readthedocs.io/en/latest/index.html")
     (synopsis "Access online astronomical data resources")
     (description "Astroquery is a package that contains a collection of tools
 to access online Astronomical data.  Each web service has its own sub-package.")
-- 
2.41.0

[bug#67237] [PATCH 21/32] gnu: python-extension-helpers: Enable tests.

[Sharlatan Hellseher]

* gnu/packages/python-xyz.scm (python-extension-helpers): Enable tests.
[arguments]{phases}: Add 'prepare-test-environment phase.

Change-Id: I6effa60f3ccd334d11b5f86162742f2272f737b1
---
 gnu/packages/python-xyz.scm | 19 ++++++++++++++++---
 1 file changed, 16 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 318ce539db..6d3e30a91e 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -4254,9 +4254,22 @@ (define-public python-extension-helpers
       (sha256
         (base32 "1rjha07ds633fb81hn3i2yzk3v2flbi6qa091ix4mkvrgk3gl6ya"))))
   (build-system pyproject-build-system)
-  ;; FIXME: pytest failed to load test suit, find out why.
-  ;;  - _pytest.pathlib.ImportPathMismatchError: ('extension_helpers.conftes
-  (arguments (list #:tests? #f))
+  (arguments
+   (list
+    #:phases
+    #~(modify-phases %standard-phases
+        (add-before 'check 'prepare-test-environment
+          (lambda _
+            ;; To solve pytest/conftest issue. Pytest tries to load all
+            ;; files with word 'test' in them.
+            ;;
+            ;; ImportError while loading conftest ...
+            ;; _pytest.pathlib.ImportPathMismatchError: ...
+            ;;
+            (call-with-output-file "pytest.ini"
+              (lambda (port)
+                (format port "[pytest]
+python_files = test_*.py"))))))))
   (native-inputs
     (list python-coverage
           python-pytest
-- 
2.41.0

[bug#67237] [PATCH 22/32] gnu: python-extension-helpers: Improve style.

[Sharlatan Hellseher]

* gnu/packages/python-xyz.scm (python-extension-helpers): Improve
package style by applying indentation.

Change-Id: Icf337ea724244448a3aac8ecec8033ae3cd958e3
---
 gnu/packages/python-xyz.scm | 70 ++++++++++++++++++-------------------
 1 file changed, 35 insertions(+), 35 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 6d3e30a91e..3f9019d248 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -4244,46 +4244,46 @@ (define-public python-exceptiongroup
     (license license:expat)))
 
 (define-public python-extension-helpers
-(package
-  (name "python-extension-helpers")
-  (version "1.0.0")
-  (source
-    (origin
-      (method url-fetch)
-      (uri (pypi-uri "extension-helpers" version))
-      (sha256
+  (package
+    (name "python-extension-helpers")
+    (version "1.0.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "extension-helpers" version))
+       (sha256
         (base32 "1rjha07ds633fb81hn3i2yzk3v2flbi6qa091ix4mkvrgk3gl6ya"))))
-  (build-system pyproject-build-system)
-  (arguments
-   (list
-    #:phases
-    #~(modify-phases %standard-phases
-        (add-before 'check 'prepare-test-environment
-          (lambda _
-            ;; To solve pytest/conftest issue. Pytest tries to load all
-            ;; files with word 'test' in them.
-            ;;
-            ;; ImportError while loading conftest ...
-            ;; _pytest.pathlib.ImportPathMismatchError: ...
-            ;;
-            (call-with-output-file "pytest.ini"
-              (lambda (port)
-                (format port "[pytest]
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'check 'prepare-test-environment
+            (lambda _
+              ;; To solve pytest/conftest issue. Pytest tries to load all
+              ;; files with word 'test' in them.
+              ;;
+              ;; ImportError while loading conftest ...
+              ;; _pytest.pathlib.ImportPathMismatchError: ...
+              ;;
+              (call-with-output-file "pytest.ini"
+                (lambda (port)
+                  (format port "[pytest]
 python_files = test_*.py"))))))))
-  (native-inputs
-    (list python-coverage
-          python-pytest
-          python-pytest-astropy
-          python-pytest-cov
-          python-setuptools-scm))
-  (home-page "https://extension-helpers.readthedocs.io")
-  (synopsis "Astropy ecosystem utilities for building and installing packages")
-  (description
-    "The extension-helpers package includes convenience helpers to assist with
+    (native-inputs
+     (list python-coverage
+           python-pytest
+           python-pytest-astropy
+           python-pytest-cov
+           python-setuptools-scm))
+    (home-page "https://extension-helpers.readthedocs.io")
+    (synopsis "Astropy ecosystem utilities for building and installing packages")
+    (description
+     "The extension-helpers package includes convenience helpers to assist with
 building Python packages with compiled C/Cython extensions.  It is developed by
 the Astropy project but is intended to be general and usable by any Python
 package.")
-  (license license:bsd-3)))
+    (license license:bsd-3)))
 
 (define-public python-extras
   (package
-- 
2.41.0

[bug#67237] [PATCH 23/32] gnu: python-extension-helpers: Update to 1.1.0.

[Sharlatan Hellseher]

* gnu/packages/python-xyz.scm (python-extension-helpers): Update to 1.1.0.

Change-Id: Ic6f8f5b5b293697cf949a5944d9e2303bcb2733e
---
 gnu/packages/python-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 3f9019d248..73a5f2d5ad 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -4246,13 +4246,13 @@ (define-public python-exceptiongroup
 (define-public python-extension-helpers
   (package
     (name "python-extension-helpers")
-    (version "1.0.0")
+    (version "1.1.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "extension-helpers" version))
        (sha256
-        (base32 "1rjha07ds633fb81hn3i2yzk3v2flbi6qa091ix4mkvrgk3gl6ya"))))
+        (base32 "0a82qprdvrm3b8y065n4ri45ji5dhmg9yivlq77gilgqldw0qij9"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.41.0

[bug#67237] [PATCH 24/32] gnu: python-poliastro: Improve package style.

[Sharlatan Hellseher]

* gnu/package/astronomy.scm (python-poliastro): Improve package style.
[arguments]: Swap to use {test-flags} and standard {check} phase.

Change-Id: I0dde01af97adc883e8a3ce82a8448f4d10fdab64
---
 gnu/packages/astronomy.scm | 27 +++++++++++----------------
 1 file changed, 11 insertions(+), 16 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index d12dccc208..f19f40a69d 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2118,27 +2118,22 @@ (define-public python-poliastro
     (build-system pyproject-build-system)
     (arguments
      (list
+      #:test-flags
+      #~(list "-m" "not remote_data"
+              ;; TODO: Review failing tests later when any upstream
+              ;; suggestions are provided:
+              ;; https://github.com/poliastro/poliastro/issues/1618
+              "-k" (string-append "not test_czml_add_trajectory"
+                                  " and not test_czml_custom_packet"
+                                  " and not test_czml_ground_station"
+                                  " and not test_czml_groundtrack"
+                                  " and not test_czml_preamble"))
       #:phases
       #~(modify-phases %standard-phases
           ;; NOTE: Tests take about 7-10 minutes to pass.
           (add-before 'check 'prepare-test-environment
             (lambda _
-              (setenv "HOME" "/tmp")
-              ;; TODO: Review failing tests later when any upstream
-              ;; suggestions are provided:
-              ;; https://github.com/poliastro/poliastro/issues/1618
-              (substitute* "tests/test_czml.py"
-              (("def test_czml_add_trajectory") "def __off_test_czml_add_trajectory")
-              (("def test_czml_custom_packet") "def __off_test_czml_custom_packet")
-              (("def test_czml_ground_station") "def __off_test_czml_ground_station")
-              (("def test_czml_groundtrack") "def __off_test_czml_groundtrack")
-              (("def test_czml_preamble") "def __off_test_czml_preamble"))))
-          (replace 'check
-            (lambda* (#:key tests? #:allow-other-keys)
-              (when tests?
-                (invoke "python" "-m" "pytest"
-                        ;; Skip tests that need remote data.
-                        "-m" "not remote_data")))))))
+              (setenv "HOME" "/tmp"))))))
     (native-inputs
      (list python-coverage
            python-hypothesis
-- 
2.41.0

[bug#67237] [PATCH 25/32] gnu: parfive: Update to 2.0.2.

[Sharlatan Hellseher]

* gnu/packages/python-web.scm (parfive): Update to 2.0.2.

Change-Id: Ie06cf90d17b419f22dea7e312eb1124c679bdfdd
---
 gnu/packages/python-web.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 8d5af5bd46..4b6f20745c 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -1197,13 +1197,13 @@ (define-public httpie
 (define-public parfive
   (package
     (name "parfive")
-    (version "2.0.1")
+    (version "2.0.2")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "parfive" version))
               (sha256
                (base32
-                "19dcbb6g56l5s3ih0bhs3p4acgc0gf4zdzpj4w87m69li2nhmgpx"))))
+                "0pf8rzfwxpkn84xzb4v8m1fy3k7kjlh8f9ln4y5xqlnbqpwi30lh"))))
     (build-system python-build-system)
     (arguments
      (list #:phases #~(modify-phases %standard-phases
-- 
2.41.0

[bug#67237] [PATCH 26/32] gnu: parfive: Improve package style.

[Sharlatan Hellseher]

* gnu/packages/python-web.scm (parfive): Update package style.
[build-system]: Swap to python-build-system.
[arguments]{phases}: Remove 'disable-test-requiring-network phase.  Use
standard 'check phase.  {test-flags}: Disable tests requiring network
access.

Change-Id: I5d233079f629398232f134c41fad6ea516c44c7f
---
 gnu/packages/python-web.scm | 19 ++++++++-----------
 1 file changed, 8 insertions(+), 11 deletions(-)

diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 4b6f20745c..cc95643f07 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -1204,18 +1204,15 @@ (define-public parfive
               (sha256
                (base32
                 "0pf8rzfwxpkn84xzb4v8m1fy3k7kjlh8f9ln4y5xqlnbqpwi30lh"))))
-    (build-system python-build-system)
+    (build-system pyproject-build-system)
     (arguments
-     (list #:phases #~(modify-phases %standard-phases
-                        (add-before 'check 'disable-test-requiring-network
-                          (lambda _
-                            (substitute* "parfive/tests/test_downloader.py"
-                              (("def test_ftp")
-                               "def __off_test_ftp"))))
-                        (replace 'check
-                          (lambda* (#:key tests? #:allow-other-keys)
-                            (when tests?
-                              (invoke "python" "-m" "pytest" "-vvv" "parfive")))))))
+     (list
+      #:test-flags
+      ;; Disable tests requiring network access.
+      #~(list "-k" (string-append "not test_ftp"
+                                  " and not test_download_unique"
+                                  " and not test_custom_user_agent"
+                                  " and not test_multipart"))))
     (propagated-inputs (list python-aiofiles python-aioftp python-aiohttp
                              python-tqdm))
     (native-inputs (list python-pytest
-- 
2.41.0

[bug#67237] [PATCH 27/32] gnu: python-pytest-socket: Update to 0.6.0.

[Sharlatan Hellseher]

* gnu/packages/python-check.scm (python-pytest-socket): Update to 0.6.0.
[source]: File name changed in PyPI repository.

Change-Id: I3dd984c6f752377b43decd201d184fc2da8daf60
---
 gnu/packages/python-check.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index ea74472270..e7de83539d 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -422,13 +422,13 @@ (define-public python-vcrpy
 (define-public python-pytest-socket
   (package
     (name "python-pytest-socket")
-    (version "0.5.1")
+    (version "0.6.0")
     (source (origin
               (method url-fetch)
-              (uri (pypi-uri "pytest-socket" version))
+              (uri (pypi-uri "pytest_socket" version))
               (sha256
                (base32
-                "1dkr86nxkxc0ka3rdnpmk335m8gl1zh1sy8i7w4w1jsidbf82jvw"))))
+                "0f3irpd8lwmm3pb1fqnvwg82kpkhsnzsmw8jg7yd85c349kisg1n"))))
     (build-system python-build-system)
     (arguments
      ;; FIXME: Tests fail a lot, probably requiring Internet access.
-- 
2.41.0

[bug#67237] [PATCH 28/32] gnu: python-pytest-socket: Enable tests.

[Sharlatan Hellseher]

* gnu/packages/python-check.scm (python-pytest-socket): Improve package
style, enable tests.
[build-system]: Swap to pyproject-build-system.
[arguments]{tests-flags}: Disable test requiring network access.
{phases}: Swap to use standard phases.

Change-Id: I7cdd98bc501caddc982bb5ffa21354e3987242f9
---
 gnu/packages/python-check.scm | 38 +++++++++++++----------------------
 1 file changed, 14 insertions(+), 24 deletions(-)

diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index e7de83539d..7412c04ce0 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -429,31 +429,21 @@ (define-public python-pytest-socket
               (sha256
                (base32
                 "0f3irpd8lwmm3pb1fqnvwg82kpkhsnzsmw8jg7yd85c349kisg1n"))))
-    (build-system python-build-system)
+    (build-system pyproject-build-system)
     (arguments
-     ;; FIXME: Tests fail a lot, probably requiring Internet access.
-     (list #:tests? #f
-           #:phases #~(modify-phases %standard-phases
-                        (replace 'build
-                          (lambda _
-                            (setenv "SETUPTOOLS_SCM_PRETEND_VERSION"
-                                    #$version)
-                            (setenv "SOURCE_DATE_EPOCH" "315532800")
-                            (invoke "python"
-                                    "-m"
-                                    "build"
-                                    "--wheel"
-                                    "--no-isolation"
-                                    ".")))
-                        (add-before 'check 'disable-unsupported-test
-                          (lambda _
-                            (substitute* "tests/test_async.py"
-                              (("def test_asynctest")
-                               "def __off_test_asynctest"))))
-                        (replace 'check
-                          (lambda* (#:key tests? #:allow-other-keys)
-                            (when tests?
-                              (invoke "python" "-m" "pytest" "-vvv")))))))
+     (list
+      #:test-flags
+      #~(list "-k"
+              (string-append
+               ;; Disable tests requiring network access.
+               "not test_urlopen_disabled"
+               " and not test_parametrize_with_socket_enabled_and_allow_hosts"
+               " and not test_enabled_urllib_succeeds"
+               " and not test_urllib_succeeds_by_default"
+               " and not test_disabled_urllib_fails"
+               " and not test_httpx_fails"
+               " and not test_asynctest"
+               " and not test_global_disable_and_allow_host"))))
     (native-inputs (list python-httpx
                          python-poetry-core
                          python-pypa-build
-- 
2.41.0

[bug#67237] [PATCH 29/32] gnu: python-memory-profiler: Enable all tests.

[Sharlatan Hellseher]

* gnu/packages/python-check.scm (python-memory-profiler): Enable all
available tests.
[arguments]{phases}: Remove 'disable-failing-tests phase. Use custom
'check phase.

Change-Id: Icce21131d9526c81a4cdfa7aa43be85c8f981065
---
 gnu/packages/python-check.scm | 26 ++++----------------------
 1 file changed, 4 insertions(+), 22 deletions(-)

diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index 7412c04ce0..c98a1f4dd9 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -1755,28 +1755,10 @@ (define-public python-memory-profiler
      (list
       #:phases
       #~(modify-phases %standard-phases
-          ;; XXX: @profile is not loaded in some test files and there are 3
-          ;; tests fail, disable them for now.
-          (add-after 'unpack 'disable-failing-tests
-            (lambda _
-              (with-directory-excursion "test"
-                (for-each delete-file
-                          '("test_as.py"
-                            "test_func.py"
-                            "test_gen.py"
-                            "test_loop.py"
-                            "test_loop_decorated.py"
-                            "test_mprofile.py"
-                            "test_nested.py"
-                            "test_precision_command_line.py"
-                            "test_unicode.py")))
-              (substitute* "test/test_attributes.py"
-                (("def test_with_profile") "def __off_test_with_profile"))
-              (substitute* "test/test_stream_unicode.py"
-                (("def test_unicode") "def __off_test_unicode"))
-              (substitute* "test/test_tracemalloc.py"
-                (("def test_memory_profiler")
-                 "def __off_test_memory_profiler")))))))
+          (replace 'check
+            (lambda* (#:key tests? #:allow-other-keys)
+              (when tests?
+                (invoke "make" "test")))))))
     (native-inputs
      (list python-pytest python-pytest-fixture-config python-safety))
     (propagated-inputs (list python-psutil))
-- 
2.41.0

[bug#67237] [PATCH 30/32] gnu: python-synphot: Enable tests.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-synphot): Enable tests.
[arguments]{phases}: Add 'prepare-test-environment phase.

Change-Id: Ie577ef16794fbd99ec73e39bdc8d8e1645e35532
---
 gnu/packages/astronomy.scm | 18 +++++++++++++++---
 1 file changed, 15 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index f19f40a69d..bf419ae526 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3712,9 +3712,21 @@ (define-public python-synphot
     (build-system pyproject-build-system)
     (arguments
      (list
-      ;; XXX: Test needs more love to pass.
-      ;; ERROR collecting synphot/tests/test_utils.py
-      #:tests? #f))
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'check 'prepare-test-environment
+            (lambda _
+              (invoke "python" "setup.py" "build_ext" "--inplace")
+              ;; To solve pytest/conftest issue. Pytest tries to load all
+              ;; files with word 'test' in them.
+              ;;
+              ;; ImportError while loading conftest ...
+              ;; _pytest.pathlib.ImportPathMismatchError: ...
+              ;;
+              (call-with-output-file "pytest.ini"
+                (lambda (port)
+                  (format port "[pytest]
+python_files = test_*.py"))))))))
     (propagated-inputs (list python-astropy python-numpy python-scipy))
     (native-inputs (list python-pytest python-pytest-astropy
                          python-setuptools-scm))
-- 
2.41.0

[bug#67237] [PATCH 31/32] gnu: python-stsci-stimage: Enable tests.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-stsci-stimage): Enable tests.
[arguments]{phases}: Add custom 'check phase.
[native-inputs]: Add python-waf and indent list.

Change-Id: Ifceace1d89aff97e938c4fb95f33525477499949
---
 gnu/packages/astronomy.scm | 20 ++++++++++++++++----
 1 file changed, 16 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index bf419ae526..c063285b52 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2695,11 +2695,23 @@ (define-public python-stsci-stimage
     (build-system pyproject-build-system)
     (arguments
      (list
-      ;; XXX: Fix failing tests. There are errors to load test files.
-      #:tests? #f))
+      #:phases
+      #~(modify-phases %standard-phases
+          ;; Test steps are taken from GitHub Actions.
+          ;; See https://github.com/spacetelescope/stsci.stimage/issues/27
+          (replace 'check
+            (lambda _
+              (copy-file (string-append
+                #$(this-package-native-input "python-waf") "/bin/waf")
+               "waf")
+              (invoke "python" "waf" "configure" "build" "do_tests"))))))
     (propagated-inputs (list python-numpy))
-    (native-inputs (list python-codecov python-pytest python-pytest-cov
-                         python-setuptools-scm))
+    (native-inputs
+     (list python-codecov
+           python-pytest
+           python-pytest-cov
+           python-setuptools-scm
+           python-waf))
     (home-page "https://stscistimage.readthedocs.io/en/latest/")
     (synopsis "STScI image processing")
     (description "This package provides an astronomical Python package with
-- 
2.41.0

[bug#67237] [PATCH 32/32] gnu: python-posix-ipc: Limit tests to target-x86.

[Sharlatan Hellseher]

* gnu/packages/python-xyz.scm (python-posix-ipc): Fix build on not X86
platform by disabling unit tests.
[arguments]{tests?}: Only run unit tests on target-x86.

Change-Id: I96a1fbd4e732135c9e2f26c547248f057c7778bf
---
 gnu/packages/python-xyz.scm | 7 ++++++-
 1 file changed, 6 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 73a5f2d5ad..805bd2b54d 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -33014,7 +33014,12 @@ (define-public python-posix-ipc
         (base32 "1wwp0ys8640nb31syabic1z524r1qx3q2v8h4d65am3a728l5bn4"))))
     (build-system python-build-system)
     (arguments
-     (list #:phases
+     ;; XXX: Disable failing tests on not x86_64-linux systems:
+     ;; - OSError: [Errno 38] Function not implemented
+     ;; - Test simple threaded notification
+     ;; https://github.com/osvenskan/posix_ipc/issues/35
+     (list #:tests? (target-x86?)
+           #:phases
            #~(modify-phases %standard-phases
                (add-after 'unpack 'patch-cc-path
                  (lambda _
-- 
2.41.0

bug#67237: [PATCH 01/32] gnu: celestia: Update to 1.6.4.

[Eric Bavier]

Thanks for all the updates!

I've pushed this series in commits 1d43cd5818..b7abea0fd6

Cheers,
`~Eric

On Fri, 2023-11-17 at 12:15 +0000, Sharlatan Hellseher wrote:
> * gnu/packages/astronomy.scm (celestia): Update to 1.6.4.
> 
> Change-Id: I581bb402e78584b526d83050cfedb4e8d26a6115