* [bug#74259] [PATCH] gnu: Add python-harmonypy.
@ 2024-11-08 14:48 Navid Afkhami
2024-11-11 9:53 ` bug#74259: " Ricardo Wurmus
0 siblings, 1 reply; 2+ messages in thread
From: Navid Afkhami @ 2024-11-08 14:48 UTC (permalink / raw)
To: 74259; +Cc: Navid Afkhami
* gnu/packages/bioinformatics.scm (python-harmonypy): New variable.
Change-Id: Iad8be627099858776163fccfeb27c08129e6fb75
---
gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 35ff96ce42..3b393acce2 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2397,6 +2397,32 @@ (define-public python-doubletdetection
from single-cell RNA-sequencing.")
(license license:expat)))
+(define-public python-harmonypy
+ (package
+ (name "python-harmonypy")
+ (version "0.0.10")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/slowkow/harmonypy")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "15lxgncrnsx1hapfx78pvx4rjx5d48hqixdnacdy55d84myfmrym"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs (list python-hatchling
+ python-numpy
+ python-pandas
+ python-scikit-learn
+ python-scipy))
+ (native-inputs (list python-pytest))
+ (home-page "https://github.com/slowkow/harmonypy")
+ (synopsis "Data integration algorithm")
+ (description
+ "Harmony is an algorithm for integrating multiple high-dimensional datasets.")
+ (license license:gpl2)))
+
(define-public python-hclust2
(package
(name "python-hclust2")
base-commit: 2a6d96425eea57dc6dd48a2bec16743046e32e06
prerequisite-patch-id: 8f31c5ea3685b59fb6907a9582c0ca537c9c38bd
prerequisite-patch-id: e9f28e6ac20c9572b3cc53ab09c4083161bfdf8d
--
2.43.0
^ permalink raw reply related [flat|nested] 2+ messages in thread
* bug#74259: [PATCH] gnu: Add python-harmonypy.
2024-11-08 14:48 [bug#74259] [PATCH] gnu: Add python-harmonypy Navid Afkhami
@ 2024-11-11 9:53 ` Ricardo Wurmus
0 siblings, 0 replies; 2+ messages in thread
From: Ricardo Wurmus @ 2024-11-11 9:53 UTC (permalink / raw)
To: 74259-done
Thanks for the patch. I moved hatchling to the native inputs because
it's only needed at build time. I also extended the description a
little bit.
--
Ricardo
^ permalink raw reply [flat|nested] 2+ messages in thread
end of thread, other threads:[~2024-11-11 9:54 UTC | newest]
Thread overview: 2+ messages (download: mbox.gz follow: Atom feed
-- links below jump to the message on this page --
2024-11-08 14:48 [bug#74259] [PATCH] gnu: Add python-harmonypy Navid Afkhami
2024-11-11 9:53 ` bug#74259: " Ricardo Wurmus
Code repositories for project(s) associated with this public inbox
https://git.savannah.gnu.org/cgit/guix.git
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).