From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp2 ([2001:41d0:2:bcc0::]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) by ms0.migadu.com with LMTPS id IBTYKjlfeWDybwAAgWs5BA (envelope-from ) for ; Fri, 16 Apr 2021 11:56:09 +0200 Received: from aspmx1.migadu.com ([2001:41d0:2:bcc0::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp2 with LMTPS id GP2JJDlfeWANUgAAB5/wlQ (envelope-from ) for ; Fri, 16 Apr 2021 09:56:09 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id 3472F14C0E for ; Fri, 16 Apr 2021 11:56:09 +0200 (CEST) Received: from localhost ([::1]:46962 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lXLCq-0006xB-9e for larch@yhetil.org; Fri, 16 Apr 2021 05:56:08 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:49200) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lXLCk-0006wq-Ra for guix-patches@gnu.org; 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Fri, 16 Apr 2021 05:55:44 -0400 Message-ID: <9345d6a11fd99f1a8eefeb3664508938255e1287.camel@gnu.org> From: Roel Janssen Date: Fri, 16 Apr 2021 11:55:39 +0200 Content-Type: multipart/mixed; boundary="=-oNWaDSLvzxxygzL4N0vk" User-Agent: Evolution 3.38.4 (3.38.4-1.fc33) MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Migadu-Flow: FLOW_IN ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1618566969; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:mime-version:mime-version: content-type:content-type:resent-cc:resent-from:resent-sender: resent-message-id:list-id:list-help:list-unsubscribe:list-subscribe: list-post; bh=/eUyOg1F+9oUVKYcxXezFzbA+hDTJjD+bzYxtyp/QfM=; b=GAndauk8X+1SXYVSdlPkzicmTjLcNraEJ4H3a3JR9I2RwnXAKmvmpGpdZ1yROFyxXnn7oc dnq0axzbTIVIROoztBe7pqfx3QCYko0Rsiz8MyzQSk2QQeO4wQ5OWfXauEihFMNDoSYAYf 44hqG+MRgqJnJFqBMha+/s3R9OAo/gQxf1H9rHlZJLSBWeEd2KX16suiROjeLeQFIY2nUP HizSMhlDaYEfjdqwkvvQlsDkEcJtImVUIcmQ9NQ26CzhTCxGVt0YPSWdPOBLrinuoObUba ntuxflp1vqD+dkwJ6SDxKkEDmBheFP+cua70Pd+enlRkll1d15LHib1og41Faw== ARC-Seal: i=1; s=key1; d=yhetil.org; t=1618566969; a=rsa-sha256; cv=none; b=kwyO2PNtd7JMXOxb0DDnIhcg5fDD//QFEDPdKe5y0c1WrWdI9a47YDm8QYdBXMdnzmARVn +azyTcm1N28dLQ7e0+DWnYu8M4O2FZ9gawhi5PXrCh7/+BFOUwElV6xpSmPb4EpuJOtqcP PnFDDBqAG+WwLMyoNBumqoBm0p+q+svhsQ6wSRvX7C05kMNUrM+esHIQvxHKfncxIqx6xp ZtvLZjmJRS7MZVJ6Lwp+WIZ7mwUnOhUq+PCCqrIvJSEwDm9Fyrqax4k/s3TMVCmGTlfyaW CApwgKtN97jGoKqN7ALwONJcUbONhLpnPIXoXcnZpWLaF+/ow7uWQ3Cd81I+DA== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=none; spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Spam-Score: -1.84 Authentication-Results: aspmx1.migadu.com; dkim=none; dmarc=pass (policy=none) header.from=gnu.org; spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Queue-Id: 3472F14C0E X-Spam-Score: -1.84 X-Migadu-Scanner: scn0.migadu.com X-TUID: pOgmqY+zhtMY --=-oNWaDSLvzxxygzL4N0vk Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: 7bit Hi Guix, The following patches update htslib, bcftools, samtools, and bedtools. I've succesfully built bedtools with the latest samtools instead of the 1.9 version. Kind regards, Roel Janssen --=-oNWaDSLvzxxygzL4N0vk Content-Disposition: attachment; filename="0004-gnu-Update-bedtools-to-2.30.0.patch" Content-Type: text/x-patch; name="0004-gnu-Update-bedtools-to-2.30.0.patch"; charset="UTF-8" Content-Transfer-Encoding: base64 RnJvbSA0NTQ5ZjYyMjA0MmNiOGMwNDE2NWQ4NWZmOTIyZDEyOWY3YzEwNTUzIE1vbiBTZXAgMTcg MDA6MDA6MDAgMjAwMQpGcm9tOiBSb2VsIEphbnNzZW4gPHJvZWxAZ251Lm9yZz4KRGF0ZTogRnJp LCAxNiBBcHIgMjAyMSAxMTo1MjoxNiArMDIwMApTdWJqZWN0OiBbUEFUQ0ggNC80XSBnbnU6IFVw ZGF0ZSBiZWR0b29scyB0byAyLjMwLjAuCgoqIGdudS9wYWNrYWdlcy9iaW9pbmZvcm1hdGljcy5z Y20gKGJlZHRvb2xzKTogVXBkYXRlIHRvIDIuMzAuMCwKICBbaW5wdXRzXTogVXNlIGxhdGVzdCBz YW10b29scy4KLS0tCiBnbnUvcGFja2FnZXMvYmlvaW5mb3JtYXRpY3Muc2NtIHwgNiArKystLS0K IDEgZmlsZSBjaGFuZ2VkLCAzIGluc2VydGlvbnMoKyksIDMgZGVsZXRpb25zKC0pCgpkaWZmIC0t Z2l0IGEvZ251L3BhY2thZ2VzL2Jpb2luZm9ybWF0aWNzLnNjbSBiL2dudS9wYWNrYWdlcy9iaW9p bmZvcm1hdGljcy5zY20KaW5kZXggMmEyMDk3MTA4OS4uOTRiZjkxN2RmNSAxMDA2NDQKLS0tIGEv Z251L3BhY2thZ2VzL2Jpb2luZm9ybWF0aWNzLnNjbQorKysgYi9nbnUvcGFja2FnZXMvYmlvaW5m b3JtYXRpY3Muc2NtCkBAIC00NTMsNyArNDUzLDcgQEAgY29tcHV0YXRpb25hbCBjbHVzdGVyLiIp CiAoZGVmaW5lLXB1YmxpYyBiZWR0b29scwogICAocGFja2FnZQogICAgIChuYW1lICJiZWR0b29s cyIpCi0gICAgKHZlcnNpb24gIjIuMjkuMiIpCisgICAgKHZlcnNpb24gIjIuMzAuMCIpCiAgICAg KHNvdXJjZSAob3JpZ2luCiAgICAgICAgICAgICAgIChtZXRob2QgdXJsLWZldGNoKQogICAgICAg ICAgICAgICAodXJpIChzdHJpbmctYXBwZW5kICJodHRwczovL2dpdGh1Yi5jb20vYXJxNXgvYmVk dG9vbHMyL3JlbGVhc2VzLyIKQEAgLTQ2MSw3ICs0NjEsNyBAQCBjb21wdXRhdGlvbmFsIGNsdXN0 ZXIuIikKICAgICAgICAgICAgICAgICAgICAgICAgICAgICAgICAgICAiYmVkdG9vbHMtIiB2ZXJz aW9uICIudGFyLmd6IikpCiAgICAgICAgICAgICAgIChzaGEyNTYKICAgICAgICAgICAgICAgIChi YXNlMzIKLSAgICAgICAgICAgICAgICAiMG0zaGs2NTQ4ODQ2dzgzYTlzNWRyc2N6dnk2N24yYXp4 NDFrajcxbjAza2xiMmdiendnMyIpKSkpCisgICAgICAgICAgICAgICAgIjFmMmhoNzlsN2RuMTQ3 YzJ4eWZnZjV3Zmp2bHFmdzMya2pmbm5oMm4xcXk2cnB6eDJmaWsiKSkpKQogICAgIChidWlsZC1z eXN0ZW0gZ251LWJ1aWxkLXN5c3RlbSkKICAgICAoYXJndW1lbnRzCiAgICAgICcoIzp0ZXN0LXRh cmdldCAidGVzdCIKQEAgLTQ3Myw3ICs0NzMsNyBAQCBjb21wdXRhdGlvbmFsIGNsdXN0ZXIuIikK ICAgICAobmF0aXZlLWlucHV0cwogICAgICBgKCgicHl0aG9uIiAscHl0aG9uLXdyYXBwZXIpKSkK ICAgICAoaW5wdXRzCi0gICAgIGAoKCJzYW10b29scyIgLHNhbXRvb2xzLTEuOSkKKyAgICAgYCgo InNhbXRvb2xzIiAsc2FtdG9vbHMpCiAgICAgICAgKCJ6bGliIiAsemxpYikpKQogICAgIChob21l LXBhZ2UgImh0dHBzOi8vZ2l0aHViLmNvbS9hcnE1eC9iZWR0b29sczIiKQogICAgIChzeW5vcHNp cyAiVG9vbHMgZm9yIGdlbm9tZSBhbmFseXNpcyBhbmQgYXJpdGhtZXRpYyIpCi0tIAoyLjMwLjIK Cg== --=-oNWaDSLvzxxygzL4N0vk Content-Disposition: attachment; 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