From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from eggs.gnu.org ([2001:4830:134:3::10]:49136) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1eHT7W-0004Wf-HQ for guix-patches@gnu.org; Wed, 22 Nov 2017 06:23:11 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1eHT7P-0007T7-36 for guix-patches@gnu.org; Wed, 22 Nov 2017 06:23:10 -0500 Received: from debbugs.gnu.org ([208.118.235.43]:43211) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1eHT7O-0007T3-VI for guix-patches@gnu.org; Wed, 22 Nov 2017 06:23:03 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1eHT7O-0007ab-Po for guix-patches@gnu.org; Wed, 22 Nov 2017 06:23:02 -0500 Subject: [bug#29394] [PATCH 00/12] Add Java dependencies for FastQC Resent-Message-ID: Received: from eggs.gnu.org ([2001:4830:134:3::10]:48854) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1eHT6a-0004Fx-Ol for guix-patches@gnu.org; Wed, 22 Nov 2017 06:22:18 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1eHT6V-0007BF-RB for guix-patches@gnu.org; Wed, 22 Nov 2017 06:22:12 -0500 Received: from pegasus.bbbm.mdc-berlin.de ([141.80.25.20]:39920) by eggs.gnu.org with esmtps (TLS1.0:DHE_RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1eHT6V-0007AR-HG for guix-patches@gnu.org; Wed, 22 Nov 2017 06:22:07 -0500 Received: from localhost (localhost [127.0.0.1]) by pegasus.bbbm.mdc-berlin.de (Postfix) with ESMTP id 69109511B20 for ; Wed, 22 Nov 2017 12:22:04 +0100 (CET) Received: from pegasus.bbbm.mdc-berlin.de ([127.0.0.1]) by localhost (pegasus.bbbm.mdc-berlin.de [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id 8Crx2tVZZVAy for ; Wed, 22 Nov 2017 12:21:59 +0100 (CET) Received: from HTCAONE.mdc-berlin.net (puck.citx.mdc-berlin.de [141.80.36.101]) (using TLSv1 with cipher ECDHE-RSA-AES256-SHA (256/256 bits)) (No client certificate requested) by pegasus.bbbm.mdc-berlin.de (Postfix) with ESMTPS for ; Wed, 22 Nov 2017 12:21:59 +0100 (CET) From: Ricardo Wurmus Date: Wed, 22 Nov 2017 12:21:58 +0100 Message-ID: <87zi7ev9rd.fsf@mdc-berlin.de> MIME-Version: 1.0 Content-Type: text/plain List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+kyle=kyleam.com@gnu.org Sender: "Guix-patches" To: 29394@debbugs.gnu.org The following patch series adds dependencies for the popular bioinfo tool FastQC. Ricardo Wurmus (12): gnu: Add java-snappy-1. gnu: Add javacc. gnu: Add javacc-4. gnu: Add java-commons-jexl-2. gnu: java-htsjdk: Update to 2.3.0. gnu: Add java-picard. gnu: Add java-cofoja. gnu: Add java-commons-bcel. gnu: Add ant-apache-bcel. gnu: Add ant-junit. gnu: Add java-picard-1.113. gnu: Add java-jbzip2. gnu/packages/bioinformatics.scm | 216 +++++++++++++++++++++++++++++++- gnu/packages/compression.scm | 98 +++++++++++++++ gnu/packages/java.scm | 268 ++++++++++++++++++++++++++++++++++++++++ 3 files changed, 576 insertions(+), 6 deletions(-) -- 2.14.1