* [bug#42103] [PATCH] gnu: Add r-flexsurv and dependency @ 2020-06-28 7:42 Lo Peter 2020-06-28 7:44 ` [bug#42103] [PATCH 1/2] gnu: Add r-muhaz Peter Lo 2020-09-11 6:02 ` bug#42103: [PATCH] gnu: Add r-flexsurv and dependency Ricardo Wurmus 0 siblings, 2 replies; 4+ messages in thread From: Lo Peter @ 2020-06-28 7:42 UTC (permalink / raw) To: 42103 Dear all, I am submitting a patch series of r-flexsurv and its dependency. Regards, Peter ^ permalink raw reply [flat|nested] 4+ messages in thread
* [bug#42103] [PATCH 1/2] gnu: Add r-muhaz. 2020-06-28 7:42 [bug#42103] [PATCH] gnu: Add r-flexsurv and dependency Lo Peter @ 2020-06-28 7:44 ` Peter Lo 2020-06-28 7:44 ` [bug#42103] [PATCH 2/2] gnu: Add r-flexsurv Peter Lo 2020-09-11 6:02 ` bug#42103: [PATCH] gnu: Add r-flexsurv and dependency Ricardo Wurmus 1 sibling, 1 reply; 4+ messages in thread From: Peter Lo @ 2020-06-28 7:44 UTC (permalink / raw) To: 42103; +Cc: Peter Lo * gnu/packages/cran.scm (r-muhaz): New variable. --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ab5e57c0e2..b6cc9b48c3 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -22325,3 +22325,26 @@ across a wide array of bioinformatic R packages.") and clustering large sequence datasets using fast alignment-free k-mer counting and recursive k-means partitioning.") (license license:gpl3))) + +(define-public r-muhaz + (package + (name "r-muhaz") + (version "1.2.6.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "muhaz" version)) + (sha256 + (base32 + "08qh43zx6h3yby44q2vxphfvmfdmqxpgyp0734yn341sy9n8pkkk")))) + (properties `((upstream-name . "muhaz"))) + (build-system r-build-system) + (propagated-inputs `(("r-survival" ,r-survival))) + (native-inputs `(("gfortran" ,gfortran))) + (home-page + "https://cran.r-project.org/web/packages/muhaz") + (synopsis + "Hazard Function Estimation in Survival Analysis") + (description + "Produces a smooth estimate of the hazard function for censored data.") + (license (list license:gpl2+ license:gpl3+)))) -- 2.17.1 ^ permalink raw reply related [flat|nested] 4+ messages in thread
* [bug#42103] [PATCH 2/2] gnu: Add r-flexsurv. 2020-06-28 7:44 ` [bug#42103] [PATCH 1/2] gnu: Add r-muhaz Peter Lo @ 2020-06-28 7:44 ` Peter Lo 0 siblings, 0 replies; 4+ messages in thread From: Peter Lo @ 2020-06-28 7:44 UTC (permalink / raw) To: 42103; +Cc: Peter Lo * gnu/packages/cran.scm (r-flexsurv): New variable. --- gnu/packages/cran.scm | 37 +++++++++++++++++++++++++++++++++++++ 1 file changed, 37 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b6cc9b48c3..0ddd0d29d2 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -22348,3 +22348,40 @@ counting and recursive k-means partitioning.") (description "Produces a smooth estimate of the hazard function for censored data.") (license (list license:gpl2+ license:gpl3+)))) + +(define-public r-flexsurv + (package + (name "r-flexsurv") + (version "1.1.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "flexsurv" version)) + (sha256 + (base32 + "0x7p1rv51pplfyyzcg63ssb8z56mig7y0363hkr0219w3cvyq9nr")))) + (properties `((upstream-name . "flexsurv"))) + (build-system r-build-system) + (propagated-inputs + `(("r-desolve" ,r-desolve) + ("r-mstate" ,r-mstate) + ("r-muhaz" ,r-muhaz) + ("r-mvtnorm" ,r-mvtnorm) + ("r-quadprog" ,r-quadprog) + ("r-rcpp" ,r-rcpp) + ("r-survival" ,r-survival) + ("r-tibble" ,r-tibble) + ("r-tidyr" ,r-tidyr))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page + "https://github.com/chjackson/flexsurv-dev") + (synopsis + "Flexible Parametric Survival and Multi-State Models") + (description + "Flexible parametric models for time-to-event data, including +the Royston-Parmar spline model, generalized gamma and generalized F +distributions. Any user-defined parametric distribution can be +fitted, given at least an R function defining the probability density +or hazard. There are also tools for fitting and predicting from fully +parametric multi-state models.") + (license license:gpl2+))) -- 2.17.1 ^ permalink raw reply related [flat|nested] 4+ messages in thread
* bug#42103: [PATCH] gnu: Add r-flexsurv and dependency 2020-06-28 7:42 [bug#42103] [PATCH] gnu: Add r-flexsurv and dependency Lo Peter 2020-06-28 7:44 ` [bug#42103] [PATCH 1/2] gnu: Add r-muhaz Peter Lo @ 2020-09-11 6:02 ` Ricardo Wurmus 1 sibling, 0 replies; 4+ messages in thread From: Ricardo Wurmus @ 2020-09-11 6:02 UTC (permalink / raw) To: Lo Peter; +Cc: 42103-done Hi Peter, > I am submitting a patch series of r-flexsurv and its dependency. I changed synopsis and description of both package definitions and pushed them to the master branch with commit 9e4ef763ea. Sorry for the delay! -- Ricardo ^ permalink raw reply [flat|nested] 4+ messages in thread
end of thread, other threads:[~2020-09-11 6:02 UTC | newest] Thread overview: 4+ messages (download: mbox.gz / follow: Atom feed) -- links below jump to the message on this page -- 2020-06-28 7:42 [bug#42103] [PATCH] gnu: Add r-flexsurv and dependency Lo Peter 2020-06-28 7:44 ` [bug#42103] [PATCH 1/2] gnu: Add r-muhaz Peter Lo 2020-06-28 7:44 ` [bug#42103] [PATCH 2/2] gnu: Add r-flexsurv Peter Lo 2020-09-11 6:02 ` bug#42103: [PATCH] gnu: Add r-flexsurv and dependency Ricardo Wurmus
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