diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 43cdf811e..ed713cd14 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -14076,7 +14076,6 @@ absolute GSEA.") (file-name (git-file-name name version)) (sha256 (base32 "1xr92r820x8qlkcr3b57iw223yq8vjgyi42jr79w2xgw47qzr575")))) - ;;(properties `((upstream-name . "Filtlong"))) (build-system gnu-build-system) (arguments `(#:tests? #f ; no check target @@ -14087,9 +14086,7 @@ absolute GSEA.") (lambda* (#:key outputs #:allow-other-keys) (let* ((out (assoc-ref outputs "out")) (bin (string-append out "/bin")) - (scripts (string-append out "/scripts"))) - (mkdir-p bin) - (mkdir-p scripts) + (scripts (string-append out "/share/filtlong/scripts"))) (install-file "bin/filtlong" bin) (install-file "scripts/histogram.py" scripts) (install-file "scripts/read_info_histograms.sh" scripts)) @@ -14098,8 +14095,8 @@ absolute GSEA.") (lambda* (#:key inputs outputs #:allow-other-keys) (let* ((out (assoc-ref outputs "out")) (path (getenv "PYTHONPATH"))) - ;;(wrap-program (string-apend scripts "scripts/read_info_histograms.sh") - (wrap-program (string-append out "/scripts/histogram.py") + (wrap-program (string-append out + "/share/filtlong/scripts/histogram.py") `("PYTHONPATH" ":" prefix (,path)))) #t)) (add-before 'check 'patch-tests @@ -14114,7 +14111,7 @@ absolute GSEA.") (home-page "https://github.com/rrwick/Filtlong/") (synopsis "Tool for quality filtering of Nanopore and PacBio data") (description - "The @code{filtlong} package is a tool for filtering long reads by quality. + "The Filtlong package is a tool for filtering long reads by quality. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the filter.")