From mboxrd@z Thu Jan  1 00:00:00 1970
Received: from eggs.gnu.org ([2001:470:142:3::10]:35668 helo=eggs1p.gnu.org)
 by lists.gnu.org with esmtp (Exim 4.90_1)
 (envelope-from <Debian-debbugs@debbugs.gnu.org>) id 1jQIJC-0006zm-IE
 for guix-patches@gnu.org; Sun, 19 Apr 2020 18:21:02 -0400
Received: from Debian-exim by eggs1p.gnu.org with spam-scanned (Exim 4.90_1)
 (envelope-from <Debian-debbugs@debbugs.gnu.org>) id 1jQIJC-0000CS-8I
 for guix-patches@gnu.org; Sun, 19 Apr 2020 18:21:02 -0400
Received: from debbugs.gnu.org ([209.51.188.43]:34593)
 by eggs1p.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128)
 (Exim 4.90_1) (envelope-from <Debian-debbugs@debbugs.gnu.org>)
 id 1jQIJB-0000C5-Ry
 for guix-patches@gnu.org; Sun, 19 Apr 2020 18:21:01 -0400
Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2)
 (envelope-from <Debian-debbugs@debbugs.gnu.org>) id 1jQIJB-0002Kg-NE
 for guix-patches@gnu.org; Sun, 19 Apr 2020 18:21:01 -0400
Subject: [bug#40691] [PATCH 0/1] gnu: Add gromacs.
Resent-Message-ID: <handler.40691.B40691.15873348078878@debbugs.gnu.org>
From: Ludovic =?UTF-8?Q?Court=C3=A8s?= <ludo@gnu.org>
References: <b248e42f-39a6-1863-f35c-5b7027dd3974@gmail.com>
Date: Mon, 20 Apr 2020 00:19:57 +0200
In-Reply-To: <b248e42f-39a6-1863-f35c-5b7027dd3974@gmail.com> (Vincent
 Legoll's message of "Sat, 18 Apr 2020 00:22:54 +0200")
Message-ID: <87k12b15ki.fsf@gnu.org>
MIME-Version: 1.0
Content-Type: text/plain; charset=utf-8
Content-Transfer-Encoding: quoted-printable
List-Id: <guix-patches.gnu.org>
List-Unsubscribe: <https://lists.gnu.org/mailman/options/guix-patches>,
 <mailto:guix-patches-request@gnu.org?subject=unsubscribe>
List-Archive: <https://lists.gnu.org/archive/html/guix-patches>
List-Post: <mailto:guix-patches@gnu.org>
List-Help: <mailto:guix-patches-request@gnu.org?subject=help>
List-Subscribe: <https://lists.gnu.org/mailman/listinfo/guix-patches>,
 <mailto:guix-patches-request@gnu.org?subject=subscribe>
Errors-To: guix-patches-bounces+kyle=kyleam.com@gnu.org
Sender: "Guix-patches" <guix-patches-bounces+kyle=kyleam.com@gnu.org>
To: Vincent Legoll <vincent.legoll@gmail.com>
Cc: 40691@debbugs.gnu.org

Hi Vincent,

Vincent Legoll <vincent.legoll@gmail.com> skribis:

> following this is a patch to add gromacs.
>
> Description & synopsis taken from nix (hello Tobias)

Heheh.  :-)

> Not sure if we want more cmake flags.

Could you add a comment explaining the reason for this flag?

> problems reported by cmake:
>
> -- Found Doxygen:
> /gnu/store/k6albjaxkybsgshqyw6g44f5hz75l7q6-doxygen-1.8.15/bin/doxygen
> (found version "1.8.15") found components:  doxygen missing
> components:  dot

Perhaps add =E2=80=98graphviz=E2=80=99 as a native input?

> -- Could NOT find Sphinx: Found unsuitable version "-real 2.3.1", but
> required is at least "1.6.1" (found
> /gnu/store/anyhb84x3mvyp11sbhmdnicbsa42m3x0-python-sphinx-2.3.1/bin/sphin=
x-build)

Oh, looks like it=E2=80=99s looking at argv[0] and the script is wrapped.  =
:-/
Can you somehow for CMake to think it=E2=80=99s fine, either with a flag or=
 by
skipping the relevant check in =E2=80=98CMakeLists.txt=E2=80=99?

Thanks,
Ludo=E2=80=99.