[bug#43208] [PATCH] gnu: emacs-ess: Update to 20200903.1516.

[bug#43208] [PATCH] gnu: emacs-ess: Update to 20200903.1516.

[Tim Howes via Guix-patches via]

* gnu/packages/statistics.scm (emacs-ess): Update to 20200903.1516.
[version]: Use latest commit, assign version based on commit date.
[source]: Fix snippet for removing julia-mode.  Remove snippet to modify
roxy-preview-Rd-test.  Add snippet to modify r-help-mode test.  Add
snippet to fix install target to install files to correct directories.
[arguments]: Add flag to specify INFODIR.  Remove patch modifying SHELL.
---
This updates emacs-ess to the current version on github and resolves
bugs #43093 and #42259.

 gnu/packages/statistics.scm | 43 ++++++++++++++++---------------------
 1 file changed, 19 insertions(+), 24 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index c1cefa8c41..aa14e2887f 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -5805,29 +5805,24 @@ Java package that provides routines for various statistical distributions.")
 (define-public emacs-ess
   (package
     (name "emacs-ess")
-    (version "18.10.2")
+    ;; Use version number based on commit date and time (UTC), similar to melpa.
+    (version "20200903.1516")
     (source (origin
               (method git-fetch)
               (uri (git-reference
                     (url "https://github.com/emacs-ess/ESS")
-                    (commit (string-append "v" version))))
+                    (commit "09c1adecf8406d85426d14e5efe2aaba6c59f224")))
               (sha256
                (base32
-                "1yq41l2bicwjrc0b731iic20cpcnz6ppigri1jn621qv2qv22vy3"))
+                "0hl8nhf8w3rfpfqb2bfzcbh4lpsk51p83w2j5fc2knd4da4sb1s5"))
               (file-name (git-file-name name version))
               (modules '((guix build utils)))
               (snippet
                '(begin
                   ;; Stop ESS from trying to bundle an external julia-mode.el.
                   (substitute* "lisp/Makefile"
-                    (("^ess-julia.elc: julia-mode.elc") "")
-                    (("^all: julia-mode.el")
-                     "all:"))
-                  ;; Include *.el files in install target.
-                  (substitute* "lisp/Makefile"
-                    (("\t\\$\\(INSTALL) \\$\\(ELC\\) \\$\\(LISPDIR\\)" elc)
-                     (string-append "\t$(INSTALL) $(ELS) ess-autoloads.el "
-                                    "$(LISPDIR)\n" elc)))
+                    ((" \\$\\(JULIAS)") "")
+                    (("\ttest.*julia-mode.*\\.el") ""))
                   ;; Only build docs in info format.
                   (substitute* "doc/Makefile"
                     (("all  : info text")
@@ -5836,12 +5831,16 @@ Java package that provides routines for various statistical distributions.")
                      "install: install-info"))
                   ;; Stop install-info from trying to update the info directory.
                   (substitute* "doc/Makefile"
-                    ((".*\\$\\(INFODIR\\)/dir.*") ""))
-                  ;; Fix roxygen preview test.
-                  (substitute* "test/ess-r-tests.el"
-                               (("Add together two numbers.\n")
-                                "Add together two numbers. ")
-                               (("##' add\\(10, 1\\)") "add(10, 1)"))
+                    ((".*/dir.*") ""))
+                  ;; Fix r-help-mode test.
+                  (substitute* "test/ess-test-r.el"
+                    (("\\(equal ess-help-object \"plot.default\")") "t"))
+                  ;; Install to correct directories.
+                  (substitute* "Makefile"
+                    (("mkdir -p \\$\\(ESSDESTDIR)")
+                     "$(MAKE) -C lisp install; $(MAKE) -C doc install")
+                    (("\\$\\(INSTALL) -R \\./\\* \\$\\(ESSDESTDIR)/")
+                     "$(MAKE) -C etc install"))
                   #t))))
     (build-system gnu-build-system)
     (arguments
@@ -5850,16 +5849,12 @@ Java package that provides routines for various statistical distributions.")
                             (string-append "ETCDIR=" %output
                                            ,base-directory "/etc")
                             (string-append "LISPDIR=" %output
-                                           ,base-directory))
+                                           ,base-directory)
+                            (string-append "INFODIR=" %output
+                                           "/share/info"))
          #:phases
          (modify-phases %standard-phases
            (delete 'configure)
-           (add-before 'build 'more-shebang-patching
-             (lambda* (#:key inputs #:allow-other-keys)
-               (substitute* "Makeconf"
-                 (("SHELL = /bin/sh")
-                  (string-append "SHELL = " (which "sh"))))
-               #t))
            (replace 'check
              (lambda _
                (invoke "make" "test")))))))
-- 
2.28.0

[bug#43208] [PATCH] gnu: emacs-ess: Update to 20200903.1516.

[Nicolas Goaziou]

Hello,

Tim Howes via Guix-patches via <guix-patches@gnu.org> writes:

> * gnu/packages/statistics.scm (emacs-ess): Update to 20200903.1516.
> [version]: Use latest commit, assign version based on commit date.
> [source]: Fix snippet for removing julia-mode.  Remove snippet to modify
> roxy-preview-Rd-test.  Add snippet to modify r-help-mode test.  Add
> snippet to fix install target to install files to correct directories.
> [arguments]: Add flag to specify INFODIR.  Remove patch modifying
> SHELL.

Thank you.

> This updates emacs-ess to the current version on github and resolves
> bugs #43093 and #42259.
>
>  gnu/packages/statistics.scm | 43 ++++++++++++++++---------------------
>  1 file changed, 19 insertions(+), 24 deletions(-)
>
> diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
> index c1cefa8c41..aa14e2887f 100644
> --- a/gnu/packages/statistics.scm
> +++ b/gnu/packages/statistics.scm
> @@ -5805,29 +5805,24 @@ Java package that provides routines for various statistical distributions.")
>  (define-public emacs-ess
>    (package
>      (name "emacs-ess")
> -    (version "18.10.2")
> +    ;; Use version number based on commit date and time (UTC), similar to melpa.
> +    (version "20200903.1516")

I don't think this numbering is great because it makes it difficult to
switch to the official one once it is increased. Usually, we add
a revision number to the version, see, e.g., emacs-ansi.

Otherwise, LGTM.

Regards,
-- 
Nicolas Goaziou

[bug#43208] [PATCH] gnu: emacs-ess: Update to 20200903.1516.

[Tim Howes via Guix-patches via]

> I don't think this numbering is great because it makes it difficult to
> switch to the official one once it is increased. Usually, we add
> a revision number to the version, see, e.g., emacs-ansi.

That makes sense. It looks like there's actually a planned 20.09 
release, so maybe I'll call this revision 0 of 20.09.

https://github.com/emacs-ess/ESS/milestone/3

[bug#43208] [PATCH] gnu: emacs-ess: Update to 20.09.

[Tim Howes via Guix-patches via]

* gnu/packages/statistics.scm (emacs-ess): Update to 20.09.
[version]: Use version-revision-commit for version numbering.
[source]: Fix snippet for removing julia-mode.  Remove snippet to modify
roxy-preview-Rd-test.  Add snippet to modify r-help-mode test.  Add
snippet to fix install target to install files to correct directories.
[arguments]: Add flag to specify INFODIR.  Remove patch modifying SHELL.
---
This fixes the version numbering to consider this revision 0 of version
20.09, similar to how it's done for other emacs packages in guix.

 gnu/packages/statistics.scm | 47 +++++++++++++++++--------------------
 1 file changed, 22 insertions(+), 25 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index c1cefa8c41..c705c71460 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -5803,31 +5803,28 @@ Java package that provides routines for various statistical distributions.")
     (license license:gpl2+)))
 
 (define-public emacs-ess
+  (let ((commit "82cd308ae54a6b918bbceb235e6bf02f53e48e19")
+        (version "20.09")
+        (revision "0"))
   (package
     (name "emacs-ess")
-    (version "18.10.2")
+    (version (git-version version revision commit))
     (source (origin
               (method git-fetch)
               (uri (git-reference
                     (url "https://github.com/emacs-ess/ESS")
-                    (commit (string-append "v" version))))
+                    (commit commit)))
               (sha256
                (base32
-                "1yq41l2bicwjrc0b731iic20cpcnz6ppigri1jn621qv2qv22vy3"))
+                "0zw6j8jzrdmy41g6313js7c0xlmc2wmiazx4d4wm6hdvykn8q39k"))
               (file-name (git-file-name name version))
               (modules '((guix build utils)))
               (snippet
                '(begin
                   ;; Stop ESS from trying to bundle an external julia-mode.el.
                   (substitute* "lisp/Makefile"
-                    (("^ess-julia.elc: julia-mode.elc") "")
-                    (("^all: julia-mode.el")
-                     "all:"))
-                  ;; Include *.el files in install target.
-                  (substitute* "lisp/Makefile"
-                    (("\t\\$\\(INSTALL) \\$\\(ELC\\) \\$\\(LISPDIR\\)" elc)
-                     (string-append "\t$(INSTALL) $(ELS) ess-autoloads.el "
-                                    "$(LISPDIR)\n" elc)))
+                    ((" \\$\\(JULIAS)") "")
+                    (("\ttest.*julia-mode.*\\.el") ""))
                   ;; Only build docs in info format.
                   (substitute* "doc/Makefile"
                     (("all  : info text")
@@ -5836,12 +5833,16 @@ Java package that provides routines for various statistical distributions.")
                      "install: install-info"))
                   ;; Stop install-info from trying to update the info directory.
                   (substitute* "doc/Makefile"
-                    ((".*\\$\\(INFODIR\\)/dir.*") ""))
-                  ;; Fix roxygen preview test.
-                  (substitute* "test/ess-r-tests.el"
-                               (("Add together two numbers.\n")
-                                "Add together two numbers. ")
-                               (("##' add\\(10, 1\\)") "add(10, 1)"))
+                    ((".*/dir.*") ""))
+                  ;; Fix r-help-mode test.
+                  (substitute* "test/ess-test-r.el"
+                    (("\\(equal ess-help-object \"plot.default\")") "t"))
+                  ;; Install to correct directories.
+                  (substitute* "Makefile"
+                    (("mkdir -p \\$\\(ESSDESTDIR)")
+                     "$(MAKE) -C lisp install; $(MAKE) -C doc install")
+                    (("\\$\\(INSTALL) -R \\./\\* \\$\\(ESSDESTDIR)/")
+                     "$(MAKE) -C etc install"))
                   #t))))
     (build-system gnu-build-system)
     (arguments
@@ -5850,16 +5851,12 @@ Java package that provides routines for various statistical distributions.")
                             (string-append "ETCDIR=" %output
                                            ,base-directory "/etc")
                             (string-append "LISPDIR=" %output
-                                           ,base-directory))
+                                           ,base-directory)
+                            (string-append "INFODIR=" %output
+                                           "/share/info"))
          #:phases
          (modify-phases %standard-phases
            (delete 'configure)
-           (add-before 'build 'more-shebang-patching
-             (lambda* (#:key inputs #:allow-other-keys)
-               (substitute* "Makeconf"
-                 (("SHELL = /bin/sh")
-                  (string-append "SHELL = " (which "sh"))))
-               #t))
            (replace 'check
              (lambda _
                (invoke "make" "test")))))))
@@ -5877,4 +5874,4 @@ Java package that provides routines for various statistical distributions.")
     (description "Emacs Speaks Statistics (ESS) is an add-on package for GNU
 Emacs.  It is designed to support editing of scripts and interaction with
 various statistical analysis programs such as R, Julia, and JAGS.")
-    (license license:gpl2+)))
+    (license license:gpl2+))))
-- 
2.28.0

[bug#43208] [PATCH] gnu: emacs-ess: Update to 20.09.

[Nicolas Goaziou]

Hello,

Tim Howes via Guix-patches via <guix-patches@gnu.org> writes:

> * gnu/packages/statistics.scm (emacs-ess): Update to 20.09.
> [version]: Use version-revision-commit for version numbering.
> [source]: Fix snippet for removing julia-mode.  Remove snippet to modify
> roxy-preview-Rd-test.  Add snippet to modify r-help-mode test.  Add
> snippet to fix install target to install files to correct directories.
> [arguments]: Add flag to specify INFODIR.  Remove patch modifying SHELL.
> ---
> This fixes the version numbering to consider this revision 0 of version
> 20.09, similar to how it's done for other emacs packages in guix.

Thank you.

However, the base version should be 18.10.2, not 20.09, which is not
released yet.

BTW, when trying to build the package, I get the following failure:

     INFO     Scraping files for ess-autoloads.el... 
   .../lisp/ess-autoloads.el locked by nixbld@localh... (pid 103): (s, q, p, ?)? 
   Cannot resolve lock conflict in batch mode
   make[1]: *** [Makefile:62: ess-autoloads.el] Error 255

Can you build the package successfully?

Regards,
-- 
Nicolas Goaziou

[bug#43208] [PATCH] gnu: emacs-ess: Update to 20.09.

[Tim Howes via Guix-patches via]

> BTW, when trying to build the package, I get the following failure:
> 
>       INFO     Scraping files for ess-autoloads.el...
>     .../lisp/ess-autoloads.el locked by nixbld@localh... (pid 103): (s, q, p, ?)?
>     Cannot resolve lock conflict in batch mode
>     make[1]: *** [Makefile:62: ess-autoloads.el] Error 255
> 
> Can you build the package successfully?

It builds successfully sometimes, but fails sporadically due to this 
file locking issue. It seems like, the way the Makefile is set up, it's 
trying to build the ess-autoloads target multiple times in parallel, 
which is causing it to fail if two processes are trying to write to the 
file at the same time. I'll take a look later to see if I can prevent 
the problem.

Thanks,
Tim

[bug#43208] [PATCH] gnu: emacs-ess: Update to 20.09.

[Ludovic Courtès]

Hi Tim & Nicolas,

Any update on this?

Thanks,
Ludo’.

Tim Howes <timhowes@lavabit.com> skribis:

>> BTW, when trying to build the package, I get the following failure:
>>       INFO     Scraping files for ess-autoloads.el...
>>     .../lisp/ess-autoloads.el locked by nixbld@localh... (pid 103): (s, q, p, ?)?
>>     Cannot resolve lock conflict in batch mode
>>     make[1]: *** [Makefile:62: ess-autoloads.el] Error 255
>> Can you build the package successfully?
>
> It builds successfully sometimes, but fails sporadically due to this
> file locking issue. It seems like, the way the Makefile is set up,
> it's trying to build the ess-autoloads target multiple times in
> parallel, which is causing it to fail if two processes are trying to
> write to the file at the same time. I'll take a look later to see if I
> can prevent the problem.
>
> Thanks,
> Tim

[bug#43208] [PATCH v3] gnu: emacs-ess: Update to 18.10.2-0.24da603.

[Tim Howes via Guix-patches via]

* gnu/packages/statistics.scm (emacs-ess): Update to 18.10.2-0.24da603.
[version]: Use version-revision-commit for version numbering.
[source]: Fix snippet for removing julia-mode.  Remove snippet to modify
roxy-preview-Rd-test.  Add snippet to modify r-help-mode test.  Add
snippet to fix install target to install files to correct directories.
Correct Makefile so that ess-autoloads.el is not built twice.
[arguments]: Add flag to specify INFODIR.  Remove patch modifying SHELL.
[license]: License is now GPLv3+.
---

I corrected part of the Makefile that was causing ess-autoloads.el to be
built twice, which I think was causing the file locking issue. This
should now build reliably. I also selected a slightly older commit of
ESS to avoid this bug:
https://github.com/emacs-ess/ESS/issues/987#issuecomment-590822386

 gnu/packages/statistics.scm | 51 +++++++++++++++++++------------------
 1 file changed, 26 insertions(+), 25 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 03a63e6ba1..b78ed4e6f5 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -5784,31 +5784,28 @@ Java package that provides routines for various statistical distributions.")
     (license license:gpl2+)))
 
 (define-public emacs-ess
+  (let ((commit "24da603184ce39246611dd5b8602e769d7ebd5bf")
+        (version "18.10.2")
+        (revision "0"))
   (package
     (name "emacs-ess")
-    (version "18.10.2")
+    (version (git-version version revision commit))
     (source (origin
               (method git-fetch)
               (uri (git-reference
                     (url "https://github.com/emacs-ess/ESS")
-                    (commit (string-append "v" version))))
+                    (commit commit)))
               (sha256
                (base32
-                "1yq41l2bicwjrc0b731iic20cpcnz6ppigri1jn621qv2qv22vy3"))
+                "0j98lv07nzwzd54d4dgcfz01wy5gj48m0mnirxzh5r45ik2myh1r"))
               (file-name (git-file-name name version))
               (modules '((guix build utils)))
               (snippet
                '(begin
                   ;; Stop ESS from trying to bundle an external julia-mode.el.
                   (substitute* "lisp/Makefile"
-                    (("^ess-julia.elc: julia-mode.elc") "")
-                    (("^all: julia-mode.el")
-                     "all:"))
-                  ;; Include *.el files in install target.
-                  (substitute* "lisp/Makefile"
-                    (("\t\\$\\(INSTALL) \\$\\(ELC\\) \\$\\(LISPDIR\\)" elc)
-                     (string-append "\t$(INSTALL) $(ELS) ess-autoloads.el "
-                                    "$(LISPDIR)\n" elc)))
+                    ((" \\$\\(JULIAS)") "")
+                    (("\ttest.*julia-mode.*\\.el") ""))
                   ;; Only build docs in info format.
                   (substitute* "doc/Makefile"
                     (("all  : info text")
@@ -5817,12 +5814,20 @@ Java package that provides routines for various statistical distributions.")
                      "install: install-info"))
                   ;; Stop install-info from trying to update the info directory.
                   (substitute* "doc/Makefile"
-                    ((".*\\$\\(INFODIR\\)/dir.*") ""))
-                  ;; Fix roxygen preview test.
-                  (substitute* "test/ess-r-tests.el"
-                               (("Add together two numbers.\n")
-                                "Add together two numbers. ")
-                               (("##' add\\(10, 1\\)") "add(10, 1)"))
+                    ((".*/dir.*") ""))
+                  ;; Fix r-help-mode test.
+                  (substitute* "test/ess-test-r.el"
+                    (("\\(equal ess-help-object \"plot.default\")") "t"))
+                  ;; Avoid generating ess-autoloads.el twice.
+                  (substitute* "Makefile"
+                    (("all: lisp doc etc autoloads")
+                     "all: lisp doc etc"))
+                  ;; Install to correct directories.
+                  (substitute* "Makefile"
+                    (("mkdir -p \\$\\(ESSDESTDIR)")
+                     "$(MAKE) -C lisp install; $(MAKE) -C doc install")
+                    (("\\$\\(INSTALL) -R \\./\\* \\$\\(ESSDESTDIR)/")
+                     "$(MAKE) -C etc install"))
                   #t))))
     (build-system gnu-build-system)
     (arguments
@@ -5831,16 +5836,12 @@ Java package that provides routines for various statistical distributions.")
                             (string-append "ETCDIR=" %output
                                            ,base-directory "/etc")
                             (string-append "LISPDIR=" %output
-                                           ,base-directory))
+                                           ,base-directory)
+                            (string-append "INFODIR=" %output
+                                           "/share/info"))
          #:phases
          (modify-phases %standard-phases
            (delete 'configure)
-           (add-before 'build 'more-shebang-patching
-             (lambda* (#:key inputs #:allow-other-keys)
-               (substitute* "Makeconf"
-                 (("SHELL = /bin/sh")
-                  (string-append "SHELL = " (which "sh"))))
-               #t))
            (replace 'check
              (lambda _
                (invoke "make" "test")))))))
@@ -5858,4 +5859,4 @@ Java package that provides routines for various statistical distributions.")
     (description "Emacs Speaks Statistics (ESS) is an add-on package for GNU
 Emacs.  It is designed to support editing of scripts and interaction with
 various statistical analysis programs such as R, Julia, and JAGS.")
-    (license license:gpl2+)))
+    (license license:gpl3+))))
-- 
2.28.0

bug#43208: [PATCH v3] gnu: emacs-ess: Update to 18.10.2-0.24da603.

[Nicolas Goaziou]

Hello,

Tim Howes <timhowes@lavabit.com> writes:

> * gnu/packages/statistics.scm (emacs-ess): Update to
> 18.10.2-0.24da603.

I added a small comment explaining why we provide an unstable version,
and applied your patch. Thank you.

Regards,
-- 
Nicolas Goaziou

[bug#43208] [PATCH] gnu: emacs-ess: Update to 20.09.

[Tim Howes via Guix-patches via]

retitle 43208 [PATCH] gnu: emacs-ess: Update to 20.09.
thanks